KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 17:00:33 2014 Check: 00 ..
Name: ENSBTAP00000017093/1-1238 Len: 1387 Check: 8155 Weight: 1.00
Name: ENSTTRP00000007449/1-1233 Len: 1387 Check: 2444 Weight: 1.00
Name: bmy_08450T0/1-941 Len: 1387 Check: 2490 Weight: 1.00
Name: BACU019374/1-1221 Len: 1387 Check: 1784 Weight: 1.00
//
1 50
ENSBTAP00000017093/1-1238 SRIMKEEVKG IPVRVALRCR PLVPKEINEG CQMCLSFVPG EPQVVVGTDK
ENSTTRP00000007449/1-1233 ---MKEEVKG IPVRVALRCR PLVPKEINEG CQMCLSFVPE EPQVVVGTDK
bmy_08450T0/1-941 ---------- ---------- ---------- ---------- ----------
BACU019374/1-1221 ---------- ------LRCR PLVPKEINEG CQMCLSFVPE EPQVVVGTDK
51 100
ENSBTAP00000017093/1-1238 SFTYDFVFDP STEQEEVFNT AVAPLIKGVF KGYNATVLAY GQTGSGKTYS
ENSTTRP00000007449/1-1233 SFTYDFVFDP STEQEEVFNT AVAPLIKGVF KGYNATVLAY GQTGSGKTYS
bmy_08450T0/1-941 ---------- ---------- ---------- ---------- ----------
BACU019374/1-1221 SFTYDFVFDP STEQEEVFNT AVAPLIKGVF KGYNATVLAY GQTGSGKTYS
101 150
ENSBTAP00000017093/1-1238 MGGAYTAEQE NEPTVGVIPR VIQLLFKEID KKSDFEFTLK VSYLEIYNEE
ENSTTRP00000007449/1-1233 MGGAYTAEQE NEPTVGVIPR VIQLLFQEID KKSDFEFTLK VSYLEIYNEE
bmy_08450T0/1-941 ---------- ---------- ---------- ---------- ----------
BACU019374/1-1221 MGGAYTAEQE NEPTVGVIPR VIQLLFQEID KKSDFEFTLK VSYLEIYNEE
151 200
ENSBTAP00000017093/1-1238 ILDLLCPSRE KAPQINIRED PKEGIKIMGL TEKTVFIALD TVSCLEQGNN
ENSTTRP00000007449/1-1233 ILDLLCPSRE KAPQINIRED PK-GIKIVGL TEKTVLVALD TVSCLEQGNN
bmy_08450T0/1-941 ---------- ---------- ---------- ---------- ----------
BACU019374/1-1221 ILDLLCPSRE KAPQINIRED PKEGIKIVGL TEKTVLVALD TVSCLEQGNN
201 250
ENSBTAP00000017093/1-1238 CRTVASTAMN SQSSRSHAIF TISIEQRKKS DKNSSFRSKL HLVDLAGSER
ENSTTRP00000007449/1-1233 CRTVASTAMN SQSSRSHAIF TISIEQRKKS DKNSSFRSKL HLVDLAGSER
bmy_08450T0/1-941 ---------- ---------- ---------- ---------- ----------
BACU019374/1-1221 CRTVASTAMN SQSSRSHAIF TISIEQRKKS DKNSSFRSKL HLVDLAGSER
251 300
ENSBTAP00000017093/1-1238 QKKTKAEGDR LKEGININRG LLCLGNVISA LGDDKKCGFV PYRDSKLTRL
ENSTTRP00000007449/1-1233 QKKTKAEGDR LKEGININRG LLCLGNVISA LGDDKKGGFV PYRDSKLTRL
bmy_08450T0/1-941 ---------- ---------- ---------- ---------- ----------
BACU019374/1-1221 QKKTKAEGDR LKEGININRG LLCLGKEISA LGDDKKGGFV PYRDSKLTRL
301 350
ENSBTAP00000017093/1-1238 LQDSLGGNSH TLMIACVSPA DSNLEETLNT LRYADRARKI KNKPVVNIDP
ENSTTRP00000007449/1-1233 LQDSLGGNSH TLMIACVSPA DSNLEETLNT LRYADRARKI KNKPVVNIDP
bmy_08450T0/1-941 ---------- ---------- ---------- ---------- ----------
BACU019374/1-1221 LQDSLGGNSH TLMIACVSPA DSNLEETLNT LRYADRARKI KNKPVVNIDP
351 400
ENSBTAP00000017093/1-1238 QTAELNHLKQ QVQQLQVLLL QAHGGTLPGS INVEPSENLQ SLMEKNQSLV
ENSTTRP00000007449/1-1233 QRAELNHLKQ QVQQLQVLLL QAHGGTLPGS INVEPSENLQ SLMEKNQSLV
bmy_08450T0/1-941 ---------- ---------- ---------- ---------- --MEKNQSLV
BACU019374/1-1221 QRAELNRLKQ QVQQLQVLLL QAHGGTLPGS INVEPSENLQ SLMEKNQSLV
401 450
ENSBTAP00000017093/1-1238 EENEKLSRGL SEAAGQTAQM LERIILTEQA NEKMNAKLEE LRKHAACKVD
ENSTTRP00000007449/1-1233 EENEKLSRGL SEAAGQTAQM LERIILTEQA NEKMNAKLEE LRKHAACKVD
bmy_08450T0/1-941 EENEKLSRGL SEAAGQTAQM LERIILTEQA NEKMNAKLEE LRKHAACKVD
BACU019374/1-1221 EENEKLSRGL SEAAGQTAQM LERIILTEQA NEKMNAKLEE LRKHAACKVD
451 500
ENSBTAP00000017093/1-1238 LQKLVETLED QELKENVEII RNLQQVITQL SDETVACMTA AIDTAVEPET
ENSTTRP00000007449/1-1233 LQKLVETLED QELKENVEMI RNLQQVITQL SDETVACMAA AIDTAVEPEA
bmy_08450T0/1-941 LQKLVETLED QELKENVEMI RNLQQVITQL SDETVACMAA AIDTAVEPEA
BACU019374/1-1221 LQKLVETLED QELKENVEVI RNLQQVITQL SDETVACMAA AIDTAVEPEA
501 550
ENSBTAP00000017093/1-1238 QEADSPDSSR SSDAFTTQHA LRQAQMSKEL VELNKALALK EALAKKMTQN
ENSTTRP00000007449/1-1233 QVEISPGSSR SSDGFTTQHA LRQAQMSKEL VELNKALALK EALAKKMTQN
bmy_08450T0/1-941 QVEISPGSSR SSDAFTTQHA LRQAQMSKEL VELNKALALK EALAKKMTQN
BACU019374/1-1221 QVEISPGSSR SSDAFTTQHA LRQAQMSKEL VELNKALALK EALAKKMTQN
551 600
ENSBTAP00000017093/1-1238 DNQLQPIHFQ YQDNIKNLEL EVINLQKEKE ELVLELQTAK KDVNQAKLSE
ENSTTRP00000007449/1-1233 DSQLQPIEFQ YQDNIKNLEL EVINLQKEKE ELVLELQTAK KDVNHAKLSE
bmy_08450T0/1-941 DSQLQPIEFQ YQDNIKNLEL EVINLQKEKE ELVLELQTTK KD--------
BACU019374/1-1221 DSQLQPIEFQ YQDKIKNLEL EVINLQKEKE ELVLELQTTK KDVNQAKLSE
601 650
ENSBTAP00000017093/1-1238 RRRKRLQELE GQIADLKKKL NEQSKLLKLK ESTEHTVSKL NQEIRVIKNQ
ENSTTRP00000007449/1-1233 RRRKRLQELE GQIADLKKKL NEQSKLLKLK ESTEHTVSKL NQEIRXXXXX
bmy_08450T0/1-941 ---------- ---------- ---------- ---------- -----VMKNQ
BACU019374/1-1221 RRRKRLQELE GQIADLKKKL NEQSKLLKLK ESTEHTVSKL NQEIRVMKNQ
651 700
ENSBTAP00000017093/1-1238 RVQLMRQMKE DAERFRQWKQ QKDKEVIQLK ERDRKRQYEL LKLERNFQKQ
ENSTTRP00000007449/1-1233 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXDRKRQYEL LKLERCFQKQ
bmy_08450T0/1-941 RVQLMRQMKE DAERFRQWKQ QKDKEVIQLK ERDRKRQYEL LKLERSFQKQ
BACU019374/1-1221 RVQLMRQMKE DAERFRQWKQ QKDKEVIQLK ERDRKRQYEL LKLERSFQKQ
701 750
ENSBTAP00000017093/1-1238 SNVLRRKTEE AAAANKRLKD ALQKQREVAD KRKESQSRGM EGTAARVKSW
ENSTTRP00000007449/1-1233 SSVLRRKTEE AAAANKRLKD ALQKQREVAE KRKETQSRGM EGTTARVKSW
bmy_08450T0/1-941 SNVLRRKTEE AAAANKRLKD ALQKQREVTE KRKETQSRGM EGTTARVKSW
BACU019374/1-1221 SNVLRRKTEE AAAANKRLKD ALQKQREVTE KRKETQSRGM EGITARVKSW
751 800
ENSBTAP00000017093/1-1238 LGNEIEIMVS TEEAKRHLND LLEDRKILAQ DVAQLKLKME SGENPPPKLR
ENSTTRP00000007449/1-1233 LGNEIEVMVS TEEAKRHLND LLEDRKILAQ DVAQLKEKVE SGENPPPKLR
bmy_08450T0/1-941 LGNEIEVMVS TEEAKRHLND LLEDRKILAQ DVAQLKEKVE SGENPPPKLR
BACU019374/1-1221 LGNEIEVMVS TEEAKRHLND LLEDRKILAQ DVAQLKEKVE SGENPPPKLR
801 850
ENSBTAP00000017093/1-1238 RRTFSLAELR GQVPASEDSI KKQIESLETE MELRSAQIAD LQQKLLDAES
ENSTTRP00000007449/1-1233 RRTFSLAELR GQVSESEDSI TKQIESLETE MELRSAQIAD LQQKLLDAES
bmy_08450T0/1-941 RRTFSLAELR GQVSESEDSI TKQIESLETE MELRSAQIAD LQQKLLDAES
BACU019374/1-1221 RRTFSLAELR GQVSESEDSI TKQIESLETE MELRSAQIAD LQQKLLDAES
851 900
ENSBTAP00000017093/1-1238 EDRLKHRWEN IATILEAKCA LKYLTGELVS SKIQVSKLES NLKQNKASHA
ENSTTRP00000007449/1-1233 EDRPKHRWEN IATILEAKCA LKYLIGELVS SKIQVSKLES SLKQNKASCA
bmy_08450T0/1-941 EDRPKHRWEN IATILEAKCA LKYLIGELVS SKIQVSKLES SLKQNKASCA
BACU019374/1-1221 EDRPKHRWEN IATILEAKCA LKYLIGELVS SKIQVSKLES SLKQNKASCA
901 950
ENSBTAP00000017093/1-1238 DMQKMLFEER NHFAEIEAEL QAELVRMEQQ HQERVLYLLS QLQQSQMAEK
ENSTTRP00000007449/1-1233 DMQKMLFEER NHFAEIETEL QAELVRVEQQ HQEKVLYLLS QLQQSQMAEK
bmy_08450T0/1-941 DMQKMLFEER NHFAEIETEL QAELVRVEQQ HQEKVLYLLS QLQQSQMAEK
BACU019374/1-1221 DMQKMLFEER NHFAEIETEL QAELVRVEQQ HQEKVLYLLS QLQQSQMAEK
951 1000
ENSBTAP00000017093/1-1238 QLEESVSEKE QQLLNTLKCQ QDEELEKMRE VCEQNQQLLR ENELMKQKLN
ENSTTRP00000007449/1-1233 QLEESVSEKE QQLLSILKC- QDEELEKMQE VCEQNQQLLR ENKIMKQKLN
bmy_08450T0/1-941 QLEESVSEKE QQLLSILKC- QDEELEKMQE VCEQNQQLLR ENKIMKQKLN
BACU019374/1-1221 QLEESVSEKE QQLLSILKC- QDEELEKMQE VCEQNQQLLR ENKIMKQKLN
1001 1050
ENSBTAP00000017093/1-1238 LLQVASKQKS HLPKDTLLSP DSSFEYIPPK PKPSRFKEKF LEQSMDIEDL
ENSTTRP00000007449/1-1233 LLQVASRQKS HLPKDTLLSP DSSFEYIPPK PKPPRFKEKF LEQSMNIEDI
bmy_08450T0/1-941 LLQVASRQKS HLPKDTLLSP DSSFEYIPPK PKPSRFKERF LEQSMDIEDI
BACU019374/1-1221 LLQVASRQKS HLPKDTLLSP DSSFEYIPPK PKPSRFKEKF LEQSMDIEDI
1051 1100
ENSBTAP00000017093/1-1238 KYCSEYSVNE PEDNDDDDGD GNDEEWKPTK LVKVSKKNIQ G---------
ENSTTRP00000007449/1-1233 KYCSEYSVNE PEDSDGDGGD GDDEEWKPTK LVKMSKKNIQ G---------
bmy_08450T0/1-941 KYCSEYSVNE PEDSDGDGGD GDDEEWKPTK LVKVSKKNIQ GVFYVETLTS
BACU019374/1-1221 KYCSEYSVNE PEDSDGDGGD GDDEEWKPTK LVKMSKKNIQ G---------
1101 1150
ENSBTAP00000017093/1-1238 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000007449/1-1233 ---------- ---------- ---------- ---------- ----------
bmy_08450T0/1-941 QALQFITTPT VACSHIPLKE NSSQITLAGF LEGEQVDIQS SFSLLEASKY
BACU019374/1-1221 ---------- ---------- ---------- ---------- ----------
1151 1200
ENSBTAP00000017093/1-1238 --CS------ ---------- ---------- ---------- ---CKGWC--
ENSTTRP00000007449/1-1233 --CS------ ---------- ---------- ---------- ---CKGWC--
bmy_08450T0/1-941 MDCSLIRLLV DTSAVDLDAL HEGHPDYYCF NPAEVGWYES LGICKGDCSS
BACU019374/1-1221 --CS------ ---------- ---------- ---------- ---CKGWC--
1201 1250
ENSBTAP00000017093/1-1238 -------GNK QCGCRKQKLD CGADCSCDA- ---------- -----TKCRN
ENSTTRP00000007449/1-1233 -------GNK QCGCRRQKLD CGVDCSCDP- ---------- -----TKCRN
bmy_08450T0/1-941 VPARAGVGTS SAGAGDRSWT VARTAAVTPQ SVETVSKARD SKLRETKCVL
BACU019374/1-1221 -------GNK QCGCRRQKLD CGADCSCDP- ---------- -----TKCRN
1251 1300
ENSBTAP00000017093/1-1238 RQ-------- ---------Q DK-------D SLGTVERTQD SEGSFKLEDP
ENSTTRP00000007449/1-1233 RQ-------- ---------Q GK-------D SLGTVERTRD SEGSFKLEDP
bmy_08450T0/1-941 RSAAPSRSDA RTCLMPTCAH GKSSFLLLSD SLGTVERTRD SEGSFKLEDP
BACU019374/1-1221 RQ-------- ---------Q GK-------D SLGTVERTRD SEGSFKLEDP
1301 1350
ENSBTAP00000017093/1-1238 TEVTPGLSFF NPVCATPNSK ILKEMSDEEQ VLLKKTAPAA SSLGLSESKD
ENSTTRP00000007449/1-1233 TEVTPGLSFF NPVCATPNSK ILKDMCDVEQ VLLNNTAPGA SSLGLPESKH
bmy_08450T0/1-941 TEVTPGLSFF NPVCATPNSK ILKEMCDVEQ VLLNNTAPGA SSLGLPESKH
BACU019374/1-1221 TEVTPGLSFF NPVCATPNSK ILKEMCDVEQ VLLNNTAPGA SSLGLPESKH
1351 1400
ENSBTAP00000017093/1-1238 VATETQGNKA PGKKKKRALA SNTSFFSGCS PIEEEAH
ENSTTRP00000007449/1-1233 VATESQENKA PGKKKKRALA SNTSFFSGCS PIEEEAH
bmy_08450T0/1-941 VATESQENKA PGKKKKRALA SNTSFFSGCS PIEEEAH
BACU019374/1-1221 VATESQENKA PGKKKKRALA SNTSFFSGCS PIEEEAH