KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:00:33 2014 Check: 00 .. Name: ENSBTAP00000017093/1-1238 Len: 1387 Check: 8155 Weight: 1.00 Name: ENSTTRP00000007449/1-1233 Len: 1387 Check: 2444 Weight: 1.00 Name: bmy_08450T0/1-941 Len: 1387 Check: 2490 Weight: 1.00 Name: BACU019374/1-1221 Len: 1387 Check: 1784 Weight: 1.00 // 1 50 ENSBTAP00000017093/1-1238 SRIMKEEVKG IPVRVALRCR PLVPKEINEG CQMCLSFVPG EPQVVVGTDK ENSTTRP00000007449/1-1233 ---MKEEVKG IPVRVALRCR PLVPKEINEG CQMCLSFVPE EPQVVVGTDK bmy_08450T0/1-941 ---------- ---------- ---------- ---------- ---------- BACU019374/1-1221 ---------- ------LRCR PLVPKEINEG CQMCLSFVPE EPQVVVGTDK 51 100 ENSBTAP00000017093/1-1238 SFTYDFVFDP STEQEEVFNT AVAPLIKGVF KGYNATVLAY GQTGSGKTYS ENSTTRP00000007449/1-1233 SFTYDFVFDP STEQEEVFNT AVAPLIKGVF KGYNATVLAY GQTGSGKTYS bmy_08450T0/1-941 ---------- ---------- ---------- ---------- ---------- BACU019374/1-1221 SFTYDFVFDP STEQEEVFNT AVAPLIKGVF KGYNATVLAY GQTGSGKTYS 101 150 ENSBTAP00000017093/1-1238 MGGAYTAEQE NEPTVGVIPR VIQLLFKEID KKSDFEFTLK VSYLEIYNEE ENSTTRP00000007449/1-1233 MGGAYTAEQE NEPTVGVIPR VIQLLFQEID KKSDFEFTLK VSYLEIYNEE bmy_08450T0/1-941 ---------- ---------- ---------- ---------- ---------- BACU019374/1-1221 MGGAYTAEQE NEPTVGVIPR VIQLLFQEID KKSDFEFTLK VSYLEIYNEE 151 200 ENSBTAP00000017093/1-1238 ILDLLCPSRE KAPQINIRED PKEGIKIMGL TEKTVFIALD TVSCLEQGNN ENSTTRP00000007449/1-1233 ILDLLCPSRE KAPQINIRED PK-GIKIVGL TEKTVLVALD TVSCLEQGNN bmy_08450T0/1-941 ---------- ---------- ---------- ---------- ---------- BACU019374/1-1221 ILDLLCPSRE KAPQINIRED PKEGIKIVGL TEKTVLVALD TVSCLEQGNN 201 250 ENSBTAP00000017093/1-1238 CRTVASTAMN SQSSRSHAIF TISIEQRKKS DKNSSFRSKL HLVDLAGSER ENSTTRP00000007449/1-1233 CRTVASTAMN SQSSRSHAIF TISIEQRKKS DKNSSFRSKL HLVDLAGSER bmy_08450T0/1-941 ---------- ---------- ---------- ---------- ---------- BACU019374/1-1221 CRTVASTAMN SQSSRSHAIF TISIEQRKKS DKNSSFRSKL HLVDLAGSER 251 300 ENSBTAP00000017093/1-1238 QKKTKAEGDR LKEGININRG LLCLGNVISA LGDDKKCGFV PYRDSKLTRL ENSTTRP00000007449/1-1233 QKKTKAEGDR LKEGININRG LLCLGNVISA LGDDKKGGFV PYRDSKLTRL bmy_08450T0/1-941 ---------- ---------- ---------- ---------- ---------- BACU019374/1-1221 QKKTKAEGDR LKEGININRG LLCLGKEISA LGDDKKGGFV PYRDSKLTRL 301 350 ENSBTAP00000017093/1-1238 LQDSLGGNSH TLMIACVSPA DSNLEETLNT LRYADRARKI KNKPVVNIDP ENSTTRP00000007449/1-1233 LQDSLGGNSH TLMIACVSPA DSNLEETLNT LRYADRARKI KNKPVVNIDP bmy_08450T0/1-941 ---------- ---------- ---------- ---------- ---------- BACU019374/1-1221 LQDSLGGNSH TLMIACVSPA DSNLEETLNT LRYADRARKI KNKPVVNIDP 351 400 ENSBTAP00000017093/1-1238 QTAELNHLKQ QVQQLQVLLL QAHGGTLPGS INVEPSENLQ SLMEKNQSLV ENSTTRP00000007449/1-1233 QRAELNHLKQ QVQQLQVLLL QAHGGTLPGS INVEPSENLQ SLMEKNQSLV bmy_08450T0/1-941 ---------- ---------- ---------- ---------- --MEKNQSLV BACU019374/1-1221 QRAELNRLKQ QVQQLQVLLL QAHGGTLPGS INVEPSENLQ SLMEKNQSLV 401 450 ENSBTAP00000017093/1-1238 EENEKLSRGL SEAAGQTAQM LERIILTEQA NEKMNAKLEE LRKHAACKVD ENSTTRP00000007449/1-1233 EENEKLSRGL SEAAGQTAQM LERIILTEQA NEKMNAKLEE LRKHAACKVD bmy_08450T0/1-941 EENEKLSRGL SEAAGQTAQM LERIILTEQA NEKMNAKLEE LRKHAACKVD BACU019374/1-1221 EENEKLSRGL SEAAGQTAQM LERIILTEQA NEKMNAKLEE LRKHAACKVD 451 500 ENSBTAP00000017093/1-1238 LQKLVETLED QELKENVEII RNLQQVITQL SDETVACMTA AIDTAVEPET ENSTTRP00000007449/1-1233 LQKLVETLED QELKENVEMI RNLQQVITQL SDETVACMAA AIDTAVEPEA bmy_08450T0/1-941 LQKLVETLED QELKENVEMI RNLQQVITQL SDETVACMAA AIDTAVEPEA BACU019374/1-1221 LQKLVETLED QELKENVEVI RNLQQVITQL SDETVACMAA AIDTAVEPEA 501 550 ENSBTAP00000017093/1-1238 QEADSPDSSR SSDAFTTQHA LRQAQMSKEL VELNKALALK EALAKKMTQN ENSTTRP00000007449/1-1233 QVEISPGSSR SSDGFTTQHA LRQAQMSKEL VELNKALALK EALAKKMTQN bmy_08450T0/1-941 QVEISPGSSR SSDAFTTQHA LRQAQMSKEL VELNKALALK EALAKKMTQN BACU019374/1-1221 QVEISPGSSR SSDAFTTQHA LRQAQMSKEL VELNKALALK EALAKKMTQN 551 600 ENSBTAP00000017093/1-1238 DNQLQPIHFQ YQDNIKNLEL EVINLQKEKE ELVLELQTAK KDVNQAKLSE ENSTTRP00000007449/1-1233 DSQLQPIEFQ YQDNIKNLEL EVINLQKEKE ELVLELQTAK KDVNHAKLSE bmy_08450T0/1-941 DSQLQPIEFQ YQDNIKNLEL EVINLQKEKE ELVLELQTTK KD-------- BACU019374/1-1221 DSQLQPIEFQ YQDKIKNLEL EVINLQKEKE ELVLELQTTK KDVNQAKLSE 601 650 ENSBTAP00000017093/1-1238 RRRKRLQELE GQIADLKKKL NEQSKLLKLK ESTEHTVSKL NQEIRVIKNQ ENSTTRP00000007449/1-1233 RRRKRLQELE GQIADLKKKL NEQSKLLKLK ESTEHTVSKL NQEIRXXXXX bmy_08450T0/1-941 ---------- ---------- ---------- ---------- -----VMKNQ BACU019374/1-1221 RRRKRLQELE GQIADLKKKL NEQSKLLKLK ESTEHTVSKL NQEIRVMKNQ 651 700 ENSBTAP00000017093/1-1238 RVQLMRQMKE DAERFRQWKQ QKDKEVIQLK ERDRKRQYEL LKLERNFQKQ ENSTTRP00000007449/1-1233 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXDRKRQYEL LKLERCFQKQ bmy_08450T0/1-941 RVQLMRQMKE DAERFRQWKQ QKDKEVIQLK ERDRKRQYEL LKLERSFQKQ BACU019374/1-1221 RVQLMRQMKE DAERFRQWKQ QKDKEVIQLK ERDRKRQYEL LKLERSFQKQ 701 750 ENSBTAP00000017093/1-1238 SNVLRRKTEE AAAANKRLKD ALQKQREVAD KRKESQSRGM EGTAARVKSW ENSTTRP00000007449/1-1233 SSVLRRKTEE AAAANKRLKD ALQKQREVAE KRKETQSRGM EGTTARVKSW bmy_08450T0/1-941 SNVLRRKTEE AAAANKRLKD ALQKQREVTE KRKETQSRGM EGTTARVKSW BACU019374/1-1221 SNVLRRKTEE AAAANKRLKD ALQKQREVTE KRKETQSRGM EGITARVKSW 751 800 ENSBTAP00000017093/1-1238 LGNEIEIMVS TEEAKRHLND LLEDRKILAQ DVAQLKLKME SGENPPPKLR ENSTTRP00000007449/1-1233 LGNEIEVMVS TEEAKRHLND LLEDRKILAQ DVAQLKEKVE SGENPPPKLR bmy_08450T0/1-941 LGNEIEVMVS TEEAKRHLND LLEDRKILAQ DVAQLKEKVE SGENPPPKLR BACU019374/1-1221 LGNEIEVMVS TEEAKRHLND LLEDRKILAQ DVAQLKEKVE SGENPPPKLR 801 850 ENSBTAP00000017093/1-1238 RRTFSLAELR GQVPASEDSI KKQIESLETE MELRSAQIAD LQQKLLDAES ENSTTRP00000007449/1-1233 RRTFSLAELR GQVSESEDSI TKQIESLETE MELRSAQIAD LQQKLLDAES bmy_08450T0/1-941 RRTFSLAELR GQVSESEDSI TKQIESLETE MELRSAQIAD LQQKLLDAES BACU019374/1-1221 RRTFSLAELR GQVSESEDSI TKQIESLETE MELRSAQIAD LQQKLLDAES 851 900 ENSBTAP00000017093/1-1238 EDRLKHRWEN IATILEAKCA LKYLTGELVS SKIQVSKLES NLKQNKASHA ENSTTRP00000007449/1-1233 EDRPKHRWEN IATILEAKCA LKYLIGELVS SKIQVSKLES SLKQNKASCA bmy_08450T0/1-941 EDRPKHRWEN IATILEAKCA LKYLIGELVS SKIQVSKLES SLKQNKASCA BACU019374/1-1221 EDRPKHRWEN IATILEAKCA LKYLIGELVS SKIQVSKLES SLKQNKASCA 901 950 ENSBTAP00000017093/1-1238 DMQKMLFEER NHFAEIEAEL QAELVRMEQQ HQERVLYLLS QLQQSQMAEK ENSTTRP00000007449/1-1233 DMQKMLFEER NHFAEIETEL QAELVRVEQQ HQEKVLYLLS QLQQSQMAEK bmy_08450T0/1-941 DMQKMLFEER NHFAEIETEL QAELVRVEQQ HQEKVLYLLS QLQQSQMAEK BACU019374/1-1221 DMQKMLFEER NHFAEIETEL QAELVRVEQQ HQEKVLYLLS QLQQSQMAEK 951 1000 ENSBTAP00000017093/1-1238 QLEESVSEKE QQLLNTLKCQ QDEELEKMRE VCEQNQQLLR ENELMKQKLN ENSTTRP00000007449/1-1233 QLEESVSEKE QQLLSILKC- QDEELEKMQE VCEQNQQLLR ENKIMKQKLN bmy_08450T0/1-941 QLEESVSEKE QQLLSILKC- QDEELEKMQE VCEQNQQLLR ENKIMKQKLN BACU019374/1-1221 QLEESVSEKE QQLLSILKC- QDEELEKMQE VCEQNQQLLR ENKIMKQKLN 1001 1050 ENSBTAP00000017093/1-1238 LLQVASKQKS HLPKDTLLSP DSSFEYIPPK PKPSRFKEKF LEQSMDIEDL ENSTTRP00000007449/1-1233 LLQVASRQKS HLPKDTLLSP DSSFEYIPPK PKPPRFKEKF LEQSMNIEDI bmy_08450T0/1-941 LLQVASRQKS HLPKDTLLSP DSSFEYIPPK PKPSRFKERF LEQSMDIEDI BACU019374/1-1221 LLQVASRQKS HLPKDTLLSP DSSFEYIPPK PKPSRFKEKF LEQSMDIEDI 1051 1100 ENSBTAP00000017093/1-1238 KYCSEYSVNE PEDNDDDDGD GNDEEWKPTK LVKVSKKNIQ G--------- ENSTTRP00000007449/1-1233 KYCSEYSVNE PEDSDGDGGD GDDEEWKPTK LVKMSKKNIQ G--------- bmy_08450T0/1-941 KYCSEYSVNE PEDSDGDGGD GDDEEWKPTK LVKVSKKNIQ GVFYVETLTS BACU019374/1-1221 KYCSEYSVNE PEDSDGDGGD GDDEEWKPTK LVKMSKKNIQ G--------- 1101 1150 ENSBTAP00000017093/1-1238 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007449/1-1233 ---------- ---------- ---------- ---------- ---------- bmy_08450T0/1-941 QALQFITTPT VACSHIPLKE NSSQITLAGF LEGEQVDIQS SFSLLEASKY BACU019374/1-1221 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSBTAP00000017093/1-1238 --CS------ ---------- ---------- ---------- ---CKGWC-- ENSTTRP00000007449/1-1233 --CS------ ---------- ---------- ---------- ---CKGWC-- bmy_08450T0/1-941 MDCSLIRLLV DTSAVDLDAL HEGHPDYYCF NPAEVGWYES LGICKGDCSS BACU019374/1-1221 --CS------ ---------- ---------- ---------- ---CKGWC-- 1201 1250 ENSBTAP00000017093/1-1238 -------GNK QCGCRKQKLD CGADCSCDA- ---------- -----TKCRN ENSTTRP00000007449/1-1233 -------GNK QCGCRRQKLD CGVDCSCDP- ---------- -----TKCRN bmy_08450T0/1-941 VPARAGVGTS SAGAGDRSWT VARTAAVTPQ SVETVSKARD SKLRETKCVL BACU019374/1-1221 -------GNK QCGCRRQKLD CGADCSCDP- ---------- -----TKCRN 1251 1300 ENSBTAP00000017093/1-1238 RQ-------- ---------Q DK-------D SLGTVERTQD SEGSFKLEDP ENSTTRP00000007449/1-1233 RQ-------- ---------Q GK-------D SLGTVERTRD SEGSFKLEDP bmy_08450T0/1-941 RSAAPSRSDA RTCLMPTCAH GKSSFLLLSD SLGTVERTRD SEGSFKLEDP BACU019374/1-1221 RQ-------- ---------Q GK-------D SLGTVERTRD SEGSFKLEDP 1301 1350 ENSBTAP00000017093/1-1238 TEVTPGLSFF NPVCATPNSK ILKEMSDEEQ VLLKKTAPAA SSLGLSESKD ENSTTRP00000007449/1-1233 TEVTPGLSFF NPVCATPNSK ILKDMCDVEQ VLLNNTAPGA SSLGLPESKH bmy_08450T0/1-941 TEVTPGLSFF NPVCATPNSK ILKEMCDVEQ VLLNNTAPGA SSLGLPESKH BACU019374/1-1221 TEVTPGLSFF NPVCATPNSK ILKEMCDVEQ VLLNNTAPGA SSLGLPESKH 1351 1400 ENSBTAP00000017093/1-1238 VATETQGNKA PGKKKKRALA SNTSFFSGCS PIEEEAH ENSTTRP00000007449/1-1233 VATESQENKA PGKKKKRALA SNTSFFSGCS PIEEEAH bmy_08450T0/1-941 VATESQENKA PGKKKKRALA SNTSFFSGCS PIEEEAH BACU019374/1-1221 VATESQENKA PGKKKKRALA SNTSFFSGCS PIEEEAH