KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:34 2014 Check: 00 .. Name: bmy_21242T0/1-399 Len: 601 Check: 2308 Weight: 1.00 Name: ENSP00000319053/1-545 Len: 601 Check: 6997 Weight: 1.00 Name: BACU002628/1-499 Len: 601 Check: 7879 Weight: 1.00 Name: ENSTTRP00000016336/1-429 Len: 601 Check: 7160 Weight: 1.00 Name: ENSBTAP00000017099/1-546 Len: 601 Check: 4119 Weight: 1.00 // 1 50 bmy_21242T0/1-399 ---------- -----MMKHF LAHSSPPVYT DIYLLERSSS PLNSRKELQE ENSP00000319053/1-545 MDCVIFEEVA VNFTPEEWAL LDHAQRSLYR DVML------ -ETCRNLASL BACU002628/1-499 MDSVVFEDVA VNFTVEEWAL LDPAQRKLYR DVML------ -ETFRNLASV ENSTTRP00000016336/1-429 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017099/1-546 MDSVVFEDVA VNFTLEEWAL LDPGQRKLYR DVML------ -ETCRNLASV 51 100 bmy_21242T0/1-399 GSCSQVKTSR SSAHWDILET GLCSEEKVVR FTRNDSRSFW GENWAFHNMQ ENSP00000319053/1-545 DCYIYVRTSG SSSQRDVFGN GISNDEEIVK FTGSDSWSIF GENWRFDNTG BACU002628/1-499 GSCPQVKTSG SSPQWDILEN ELCSEKKIVR CTRNDSCSIF GENWIFHNIR ENSTTRP00000016336/1-429 -SCPQVKTSR SSAHWDILET GLCSEEKIVR FTRNDSCSFL GENWAFHNMR ENSBTAP00000017099/1-546 VLNLYMVKTR SSTQCDILKN ELCSEEKKVR FPRNDSWSVF GENWMFLDIG 101 150 bmy_21242T0/1-399 DQHLTQERRL RNNLVESLCE GKEGQEGHQC LETLNQIIDL TVHKSFRTGI ENSP00000319053/1-545 DQHQIPQRHL RSQL-GRLCE SNE---GHQC GETLSQTANL LVHKSYPTEA BACU002628/1-499 GHQ-TQERDF RNGLVENLCK GNE---GHQC GETLNQITHL TVHKGYPTGI ENSTTRP00000016336/1-429 DQRVTQERHL RNHLVESLCE GKE---GHQC LETRNQLTHL TVHKGYLTAI ENSBTAP00000017099/1-546 GHQ-TLERDW RNHLVEKLCI DNE---GHHC LEALNQITDL TLHKGYWPGI 151 200 bmy_21242T0/1-399 QPHQCIKCGK AFRDHSFQKN QQRSYPGHKH YPCEECGQAC SCISCLSPLR ENSP00000319053/1-545 KPSECTKCGK AFE------N RQRSHTGQR- -PCKECGQAC SCLSCQSPPM BACU002628/1-499 QPYKCTKCGK AFRDRSFQKN HQRSHPGHKH YPCEECGEAC SCVSCLNPPG ENSTTRP00000016336/1-429 QPCKCTKCGK AFR------N QQRSHTRHKP HPCKECGQTC TCVSCLNPPG ENSBTAP00000017099/1-546 QPCKCTKCGK AYRGCSFQ-N QQKSLPGYRH YPCEECGEAC SCVSCLSPPR 201 250 bmy_21242T0/1-399 ETDIVEKPEK HQDAGRASKR CCPDSGVHEA L-CL----VF SHPHSGYGAI ENSP00000319053/1-545 KTQTVEKPCN CQDSRTASVT YVKSLSSKKS YECQKCGKAF ICPSSFRGHV BACU002628/1-499 ETDIVEKPEK HQDAGRASKR YVKSGSSKQS SECKKSGKAL TCPSSFKGRE ENSTTRP00000016336/1-429 GTDIVEKTDK RQDDGRASKR YVKSYSSKQS LQCKKSKKSF TCLSSVQRHV ENSBTAP00000017099/1-546 GTDIVEEPNK CQDAGRTCKR CVKSHD---- --CKKSGKAL AFPSSFKGHE 251 300 bmy_21242T0/1-399 RGETE----- ---------- ---------- ---------- ---------- ENSP00000319053/1-545 NSHHGQKTHA CKVCGKTFMY YSYLTRHVRT HTGEKPYECK ECGKAFSCPS BACU002628/1-499 RGHHGQKIHV CKVCGKSFMY YSYLARHVRT HTGEKPYECK ECEKTFRYP- ENSTTRP00000016336/1-429 RGHY------ ---------- ---------- ---------- ---------- ENSBTAP00000017099/1-546 RGQHGQKTHT CKVCGKSFSY HSYLARHMRT HTEEKHCECE KCGKAFSCPK 301 350 bmy_21242T0/1-399 ---------- ---------- ---------- ---------- ---------- ENSP00000319053/1-545 YFREHVRTHT GEKPYECKHC GKSFSCYSSF RDHVRTHTGE KPCQCKHCGK BACU002628/1-499 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016336/1-429 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017099/1-546 YFRRHMKTHS GMKPYECTEC GKAYSSSLSL REHAGTHSQE KPYECQHCGK 351 400 bmy_21242T0/1-399 -----SGLPG AGGGHRGAAQ LRADATGTSW LGAGS-ARSP SPGLGNQPLV ENSP00000319053/1-545 AFTCYSSLRE HGRTHSGEKP YECKECGKAF RYPSSLRAHM RMHTGEKPYV BACU002628/1-499 -----ASLGG HVTIHTGEKP YVCKECGKTF SCPKYFRRHV KTHSGMKPYE ENSTTRP00000016336/1-429 ---------- ------GQKI HVCEVCGKSF SYYSQIARHV RTHTGEKPYE ENSBTAP00000017099/1-546 AFSCSMSLQE HERTHTGEKP FGCPFCGKAF IYYCQLKRHV RTHTGEKPYK 401 450 bmy_21242T0/1-399 SL-------- -----WPVTR GRGGAWLNCP VSGD-WAGSR QPANQGRKGP ENSP00000319053/1-545 CKQCGKAFGC PTYFRRHVKT HSGVKPYQCK ECGKAYSFSS SLRIHVRTHT BACU002628/1-499 CMECGKAYSC SSSLREHART HSEEKPYECQ HCGKAFRHQR YFKKHVRLHS ENSTTRP00000016336/1-429 CKECGKAFTR ISHFREHVRM HTGEKPYECK QCGKAFSWCT YLREHMRTHS ENSBTAP00000017099/1-546 CKECGKAFTG ISHFREHVRM HTGEKPYECK QCGKAFSWCT YLREHMRTHS 451 500 bmy_21242T0/1-399 GGLPIGA-GA GQGLPSNQGA GPGAPSNEGG RRARSEPPEV SLSGPHAGAN ENSP00000319053/1-545 GEKPFECKHC GKAFSCHSSL REHVRTHSGE KPYECNQCGK AFSHAQYFQK BACU002628/1-499 GVKPYECMEC GKAYSCSTSL REHERTHTGE RPFECQHCGK AFTRHASLRG ENSTTRP00000016336/1-429 GEKPYECKQC GKAFPYLKSL QGHVRIHTGE KPYVCKECGK SYSCPKYFRK ENSBTAP00000017099/1-546 GEKPYECKQC GKAFPYLKSL QGHVRIHTGE KPYVCNDCGK SYSCPKYFRK 501 550 bmy_21242T0/1-399 LSRAASGV-- ---------- ASPSVLPTQV ----GGSP-- ----GGLFRE ENSP00000319053/1-545 HVRSHSGVKP YECTECGKAY SCSSSLRVHV RTHTGERPYE CKQCGKTFRY BACU002628/1-499 HMRTHSGERA YRCTQCGKAF CWPSSLRKHV RMHSEEKPYE CQQCGKAFWY ENSTTRP00000016336/1-429 HVKTHSGIKP YECTECGKMF ITSSSLRQHI KTHSEEKPYQ CQQCGKAFRY ENSBTAP00000017099/1-546 HVKTHSGVKP YECTECRKAF ITSSSLREHM KTHSEEKPYQ CQQCGKAFRY 551 600 bmy_21242T0/1-399 PGRRRRW--- ---------- ---------- ---------- ---------- ENSP00000319053/1-545 LASLQAHVRT HAGA------ ---------- ---------- ---------- BACU002628/1-499 PANLRGHMRI HAGEKL---- ---------- ---------- ---------- ENSTTRP00000016336/1-429 LISLQRHMKT HTGENSEYNC GEAFLLPKPH VNGSNHGVKS YEWKECGKTF ENSBTAP00000017099/1-546 PRSLQGHMIT HSEE------ ---------- ---------- ---------- 601 650 bmy_21242T0/1-399 - ENSP00000319053/1-545 - BACU002628/1-499 - ENSTTRP00000016336/1-429 L ENSBTAP00000017099/1-546 -