KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:36 2014 Check: 00 .. Name: ENSBTAP00000017145/1-1137 Len: 1326 Check: 989 Weight: 1.00 Name: ENSTTRP00000009172/1-1180 Len: 1326 Check: 5521 Weight: 1.00 Name: ENSP00000452120/1-1141 Len: 1326 Check: 4882 Weight: 1.00 Name: bmy_03954T0/1-1286 Len: 1326 Check: 4616 Weight: 1.00 Name: BACU008112/1-1217 Len: 1326 Check: 4038 Weight: 1.00 // 1 50 ENSBTAP00000017145/1-1137 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009172/1-1180 ---------- ---------- ---------- ---------- ---------- ENSP00000452120/1-1141 ---------- ---------- ---------- ---------- ---------- bmy_03954T0/1-1286 GAGVDQGLRP LQLSWLVLGW RSGGRGVARR KTGRPPEGPA RLGDQRPAPG BACU008112/1-1217 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000017145/1-1137 ---------- ---------- --MAGTPGRD PWGTPGICYL FGSLLAGLLF ENSTTRP00000009172/1-1180 ---------- ---------- --MAGTPGRD PWGAPGICYL LGSLLVGLLF ENSP00000452120/1-1141 ---------- ---------- --MAGARSRD PWGASGICYL FGSLLVELLF bmy_03954T0/1-1286 DLGLGARADF LALSRSTRGG RPMAGTPGRD PWGAPGICYL LGSLLAGLLF BACU008112/1-1217 ---------- ---------- --MAGTPGRD PWGAPGICYL LGSLLAGLLF 101 150 ENSBTAP00000017145/1-1137 PGAAAFNLDV MGALRKEGEP GSLFGFSVAL HRQLQPRPQS WLLVGAPQAL ENSTTRP00000009172/1-1180 PGAVAFNLDV MGALRKEGEP GSLFGFSVAL HRQLQPGPQS WLLVGAPQAL ENSP00000452120/1-1141 SRAVAFNLDV MGALRKEGEP GSLFGFSVAL HRQLQPRPQS WLLVGAPQAL bmy_03954T0/1-1286 PGAVAFNLDV MGALRKEGEP GSLFGFSVAL HRQLQPGPQS WLLVGAPQAL BACU008112/1-1217 PGAVAFNLDV MGALRKEGEP GSLFGFSVAL HRQLQPGPQS WLLVGAPQAL 151 200 ENSBTAP00000017145/1-1137 ALPGQQANRT GGLFACPLSL EETDCYRVDI DQG------- ---------- ENSTTRP00000009172/1-1180 ALPGQQANRT GGLFACPLSL EETDCYRVDI DRG------- ---------- ENSP00000452120/1-1141 ALPGQQANRT GGLFACPLSL EETDCYRVDI DQG------- ---------- bmy_03954T0/1-1286 ALPGQQANRT GGLFACPLSL EETDCYRVDI DRGGEGPVGV GWGAQEEGRG BACU008112/1-1217 ALPGQQANRT GGLFACPLSL EETDCYRVDI DRG------- ---------- 201 250 ENSBTAP00000017145/1-1137 ---------- ------ADVQ KESKENQWLG VSVRSQGPGG KIVTCAHRYE ENSTTRP00000009172/1-1180 ---------- ------ADVQ KESKENQWLG VSVRSQGPGG KIVTCAHRYE ENSP00000452120/1-1141 ---------- ------ADMQ KESKENQWLG VSVRSQGPGG KIVTCAHRYE bmy_03954T0/1-1286 GLGFLFPPLI PSVPPPADVQ KESKENQWLG VSVRSQGPGG KIVTCAHRYE BACU008112/1-1217 ---------- ------ADVQ KESKENQWLG VSVRSQGPGG KIVTCAHRYE 251 300 ENSBTAP00000017145/1-1137 ARQRVDQILE TRDVIGRCFV LSQDLAIRDE LDGGEWKFCE GRPQGHEQFG ENSTTRP00000009172/1-1180 ARQRVDQTLE TRDVIGRCFV LSQDLAVRDE LDGGEWKFCE GRPQGHEQFG ENSP00000452120/1-1141 ARQRVDQILE TRDMIGRCFV LSQDLAIRDE LDGGEWKFCE GRPQGHEQFG bmy_03954T0/1-1286 ARQRVDQILE TRDVIGRCFV LSQDLAIRDE LDGGEWKFCE GRPQGHEQFG BACU008112/1-1217 ARQRVDQILE TRDVIGRCFV LSQDLAIRDE LDGGEWKFCE GRPQGHEQFG 301 350 ENSBTAP00000017145/1-1137 FCQQGTAAAF SPDSHYLLFG APGTYNWKAG KRVEMGLESV GDMEDGP-GP ENSTTRP00000009172/1-1180 FCQQGTAAAF SPDSHYLLFG APGTYNWKGT ARVELCVQGS ADLAHLDDGP ENSP00000452120/1-1141 FCQQGTAAAF SPDSHYLLFG APGTYNWKGT ARVELCAQGS ADLAHLDDGP bmy_03954T0/1-1286 FCQQGTAAAF SPDSHYLLFG APGTYNWKGT ARVELCVQGS ADLAHLDDGP BACU008112/1-1217 FCQQGTAAAF SPDSHYLLFG APGTYNWKGT ARVELCVQGS ADLAHLDDGP 351 400 ENSBTAP00000017145/1-1137 GEQGVQSTGD MR-------- ------TSGW ERRKAE---- ---------- ENSTTRP00000009172/1-1180 YEAGGEKEQD PRLIPVPANS YFGLLFVTNI DSSDPDQLVY KTLDPADRLP ENSP00000452120/1-1141 YEAGGEKEQD PRLIPVPANS YF-------- ---------- ---------- bmy_03954T0/1-1286 YEAGGEKEQD PRLIPVPANS YFGLLFVTNI DSSDPDQLVY KTLDPADRLP BACU008112/1-1217 YEAGGEKEQD PRLIPVPANS YFGLLFVTNI DSSDPDQLVY KTLDPADRLP 401 450 ENSBTAP00000017145/1-1137 ---------- --DLALQRGS GLGRPEEHSS VVQGTHQQVR -VVVPIRVQA ENSTTRP00000009172/1-1180 GPAGDLALNS YLGFSIDSGK SLVRAEELSF VAGAPRANHK GAVVILRKDS ENSP00000452120/1-1141 ---------- --GFSIDSGK GLVRAEELSF VAGAPRANHK GAVVILRKDS bmy_03954T0/1-1286 GPAGDLALNS YLGFSIDSGK SLVRAEELSF VAGAPRANHK GAVVILRKDS BACU008112/1-1217 GPAGDLALNS YLGFSIDSGK SLVRAEELSF VAGAPRANHK GAVVILRKDS 451 500 ENSBTAP00000017145/1-1137 ARQGVAKALY AHERLLSPGH LACVIVNLST TLATKLIHGT PQFFLTLEEV ENSTTRP00000009172/1-1180 ASRLVPEVML SGERLTSGFG YSLAVADLNN DGWTDLVVGA PYFFERQEEL ENSP00000452120/1-1141 ASRLVPEVML SGERLTSGFG YSLAVADLNS DGWPDLIVGA PYFFERQEEL bmy_03954T0/1-1286 ASRLVPEVML SGERLTSGFG YSLAVADLNN DGWTDLVVGA PYYFERQEEL BACU008112/1-1217 ASRLVPEVML SGERLTSGFG YSLAVADLNN DGWTDLVVGA PYYFERQEEL 501 550 ENSBTAP00000017145/1-1137 GGTHYQ-ISH GQRVAKAGGT RRLALSLRRM TTAPLWLARG APATKLSSSA ENSTTRP00000009172/1-1180 GGAVYVYMNQ GGHWAGV-SP LRLCGSPDSM FGISLAVLGD LNQDGFPDLA ENSP00000452120/1-1141 GGAVYVYLNQ GGHWAGI-SP LRLCGSPDSM FGISLAVLGD LNQDGFPDIA bmy_03954T0/1-1286 GGAVYVYMNQ GGHWAGV-SP LRLCGSPDSM FGISLAVLGD LNQDGFPDLA BACU008112/1-1217 GGAVYVYMNQ GGHWAGV-SP LRLCGSPDSM FGISLAVLGD LNQDGFPDLA 551 600 ENSBTAP00000017145/1-1137 RTSPFP-DGE TWIGETHRHP VVL-PIQRLE GEEVSTWTGG EETRGKWGRA ENSTTRP00000009172/1-1180 VA-PFDGDGK VFIYHGSSLG LVVXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000452120/1-1141 VGAPFDGDGK VFIYHGSSLG VVAKPSQVLE GEAVGIKSFG YSLSGSLDMD bmy_03954T0/1-1286 VGAPFDGDGK VFIYHGSSLG VVVKPSQVLE GEAVGIKSFG YSLSGGLDVD BACU008112/1-1217 VGAPFDGDGK VFIYHGSSLG VVVKPSQVLE GEAVGIKSFG YSLSGGLDVD 601 650 ENSBTAP00000017145/1-1137 GNNADETRRG TYQYSSTFLR TC-LPSTPQS SSLLPSHYSL SPPGSSSMET ENSTTRP00000009172/1-1180 XXXXXXXXXX XXXXXXXXXX ARPVLHVSHE VSILPRSIDL EQPNCASGHS ENSP00000452120/1-1141 GNQYPDLLVG SLADTAVLFR ARPILHVSHE VSIAPRSIDL EQPNCAGGHS bmy_03954T0/1-1286 GNRYPDLLVG SLADTAVLFR ARPVLHVSHE VSILPRNIDL EQPNCASGHS BACU008112/1-1217 GNRYPDLLVG SLADTAVLFR ARPVLHVSHE VSILPRNIDL EQPNCASGHS 651 700 ENSBTAP00000017145/1-1137 IWSQWVFLWA RPSPQGPGPP LPPVTALDYM LDGDT-RRLR GQVPRVTFL- ENSTTRP00000009172/1-1180 VCMDLRVCFS YIASP---SS YSPAVALEYT IDGDTDRRLR GQVPRVTFLS ENSP00000452120/1-1141 VCVDLRVCFS YIAVP---SS YSPTVALDYV LDADTDRRLR GQVPRVTFLS bmy_03954T0/1-1286 VCMDLRVCFS YIASP---SS YSPVVALDYT LDGDTDRRLR GQVPRVTFLS BACU008112/1-1217 VCMDLRVCFS YIASP---SS YSPVVALDYT LDGDTDRRLR GQVPRVTFLS 701 750 ENSBTAP00000017145/1-1137 RGPDDPKHQS SGTVWLKHQH DRVCGDTMLQ LQENVKDKLR AIVVTLSYGL ENSTTRP00000009172/1-1180 RGPDDPKHQA SGTVWLKHQH DRVCGDTMLQ LQENVKDKLR AIVVTLSYSL ENSP00000452120/1-1141 RNLEEPKHQA SGTVWLKHQH DRVCGDAMFQ LQENVKDKLR AIVVTLSYSL bmy_03954T0/1-1286 RGPDDPKHQA SGTVWLKHQH DRVCGDTMLQ LQENVKDKLR AIVVTLSYSL BACU008112/1-1217 RGPDDPKHQA SGTVWLKHQH DRVCGDTMLQ LQENVKDKLR AIVVTLSYSL 751 800 ENSBTAP00000017145/1-1137 QTPRLRRQAP GQGLPPVAPI LNAHQPSTQR TEIHFLKQGC GEDKICQSNL ENSTTRP00000009172/1-1180 QTPRLRRQAP AQGLPPVAPI LNAHQPSTQR TEIHFLKQGC GEDKVCQSNL ENSP00000452120/1-1141 QTPRLRRQAP GQGLPPVAPI LNAHQPSTQR AEIHFLKQGC GEDKICQSNL bmy_03954T0/1-1286 QTPRLRRQAP GQGLPPVAPI LNAHQPSTQR TEIHFLKQGC GEDKVCQSNL BACU008112/1-1217 QTPRLRRQAP GQGLPPVAPI LNAHQPSTQR TEIHFLKQGC GEDKVCQSNL 801 850 ENSBTAP00000017145/1-1137 QLVQARFCAR VSDTEFQPLP MDADGTTALF ALSGQPVIGL ELKVTNLPSD ENSTTRP00000009172/1-1180 QLVHARFCTR VSDTEFQPLP MDADGTTALF ALSGQPVIGL ELKVTNLPSD ENSP00000452120/1-1141 QLVRARFCTR VSDTEFQPLP MDVDGTTALF ALSGQPVIGL ELMVTNLPSD bmy_03954T0/1-1286 QLVHARFCAR VSDTEFQPLP MDADGTTALF ALSGQPVIGL ELKVTNLPSD BACU008112/1-1217 QLVHARFCAR VSDTEFQPLP MDADGTTALF ALSGQPVIGL ELKVTNLPSD 851 900 ENSBTAP00000017145/1-1137 PAQPQADGDD AHEAQLLVTL PAALHYSGVR GLDPVEKPLC LSDENASHVE ENSTTRP00000009172/1-1180 PAQPQADGDD AHEAQLLVTL PASLHYSGVR ALDPAEKPLC LSNENASHVE ENSP00000452120/1-1141 PAQPQADGDD AHEAQLLVML PDSLHYSGVR ALDPAEKPLC LSNENASHVE bmy_03954T0/1-1286 PAQPQADGDD AHEAQLLVTL PASLHYSGVR ALDPAEKPLC LSNENASHVE BACU008112/1-1217 PAQPQADGDD AHEAQLLVTL PASLHYSGVR ALDPAEKPLC LSNENASHVE 901 950 ENSBTAP00000017145/1-1137 CELGNPMKRG AQVTFYLILS TSGITIETTE LEVELLLATI SEQELHPVLA ENSTTRP00000009172/1-1180 CELGNPMKRG AQATFYLILS TSGITIETTE LEVELLLATI SEQELRPVSA ENSP00000452120/1-1141 CELGNPMKRG AQVTFYLILS TSGISIETTE LEVELLLATI SEQELHPVSA bmy_03954T0/1-1286 CELGNPMKRG AQVTFYLILS TSGFTIETTE LEVELLLATI SEQELQPVSA BACU008112/1-1217 CELGNPMKRG AQVTFYLILS TSGITIETTE LEVELLLATI SEQELQPVSA 951 1000 ENSBTAP00000017145/1-1137 RARVFIELPL SITGVAIPQQ LFFSGVVRGE SAMRSERDVG SKVKYEVTVS ENSTTRP00000009172/1-1180 RDRVFIELPL SITGVAIPQQ LFFSGVVRGE SAMQSERDVG SKVKYEVTXX ENSP00000452120/1-1141 RARVFIELPL SIAGMAIPQQ LFFSGVVRGE RAMQSERDVG SKVKYEVTVS bmy_03954T0/1-1286 RARVFIELPL SITGVAIPQQ LFFSGVVRGE SAMQSERDVG SKVKYEVTVS BACU008112/1-1217 RARVFIELPL SITGVAIPQQ LFFSGVVRGE SAMQSERDVG SKVKYEVTVS 1001 1050 ENSBTAP00000017145/1-1137 NQGQSLNTLG SAFLNIMWPH EIANGKWLLY PMRVELEGGQ GPGQRGLCSP ENSTTRP00000009172/1-1180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000452120/1-1141 NQGQSLRTLG SAFLNIMWPH EIANGKWLLY PMQVELEGGQ GPGQKGLCSP bmy_03954T0/1-1286 NQGQSLNTLG SAFLNIMWPH EIANGKWLLY PMRVELEGGQ GPGQRGLCSP BACU008112/1-1217 NQGQSLNTLG SAFLNIMWPH EIANGKWLLY PMRVELEGGQ GPGQRGLCSP 1051 1100 ENSBTAP00000017145/1-1137 RPNILQLDVD SRDRRRRELG PPESQEPREQ PEPSTSWWPV SSAEKKKNIT ENSTTRP00000009172/1-1180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000452120/1-1141 RPNILHLDVD SRDRRRRELE PPEQQEPGER QEPSMSWWPV SSAEKKKNIT bmy_03954T0/1-1286 RPNILHLDVD SRDRRRRELG QPELQEPQEQ PEPSTSWWPV SSAEKKKNVT BACU008112/1-1217 RPNILHLDVD SRDRRRRELG QPEPQEPHEQ PEPSTSWWPV SSAEKKKNVT 1101 1150 ENSBTAP00000017145/1-1137 LDCARGTANC VVFSCPLYSF DRAAVLHVWG RLWNSTFLEE YSAVKSLEVI ENSTTRP00000009172/1-1180 XDCTRGTASC VVFSCPLYSF DRAAVLHVWG RLWNSTFLEE YSAVKSLEVI ENSP00000452120/1-1141 LDCARGTANC VVFSCPLYSF DRAAVLHVWG RLWNSTFLEE YSAVKSLEVI bmy_03954T0/1-1286 LDCTRGTASC VVFSCPLYSF DRAAVLHVWG RLWNSTFLEE YSAVKSLEVI BACU008112/1-1217 LDCTRGTASC VVFSCPLYSF DRAAVLHVWG RLWNSTFLEE YSAVKSLEVI 1151 1200 ENSBTAP00000017145/1-1137 VRANITVKSS IKNLLLRDAS TVIPVMVYLD PAAVAAEGVP WWVILLAVLA ENSTTRP00000009172/1-1180 VQANITVKSS IKNLLLRDAS TVIPVMVYLD PVAVVAEGVP WWAILLAVLA ENSP00000452120/1-1141 VRANITVKSS IKNLMLRDAS TVIPVMVYLD PMAVVAEGVP WWVILLAVLA bmy_03954T0/1-1286 VQANITVKSS IKNLLLRDAS TVIPVMVYLD PVAVVAEGVP WWVILLAVLA BACU008112/1-1217 VQANITVKSS IKNLLLRDAS TVIPVMVYLD PVAVVAEGVP WWVILLAVLA 1201 1250 ENSBTAP00000017145/1-1137 GLLVLALLVL LMWK------ ---------- ---------- ---------- ENSTTRP00000009172/1-1180 GLLVLALLVL LMWK------ ---------- ---------- ---------- ENSP00000452120/1-1141 GLLVLALLVL LLWK------ ---------- ---------- ---------- bmy_03954T0/1-1286 GLLVLALLVL LMWK------ ---------- ---------- ---------- BACU008112/1-1217 GLLVLALLVL LMWKCGFFHR NSQSSSFPTN YHRARLAVQP SAAEAGGPGT 1251 1300 ENSBTAP00000017145/1-1137 MGFFKRARYP EATVPQYHAV KIPREDRQQF KEEKTGTILR NNWGSPRREG ENSTTRP00000009172/1-1180 MGFFKRARYP EATVPQYHAV KIPREDRQQF KEEKTGTILR NNWGGPRGGG ENSP00000452120/1-1141 MGFFKRAKHP EATVPQYHAV KIPREDRQQF KEEKTGTILR NNWGSPRREG bmy_03954T0/1-1286 MGFFKRARYP EATVPQYHAV KIPREDRQQF KEEKTGTILR NNWGSPRREG BACU008112/1-1217 MGFFKRARYP EATVPQYHAV KIPREDRQQF KEEKTGTILR NNWGSPRREG 1301 1350 ENSBTAP00000017145/1-1137 PDAHPILAGD GHPELGSDGH TVPGTA ENSTTRP00000009172/1-1180 PDAHPILAAD GHPEPGSDGH PVPGTA ENSP00000452120/1-1141 PDAHPILAAD GHPELGPDGH PGPGTA bmy_03954T0/1-1286 PDAHPILAGD GHPELGSDGH PVPGTA BACU008112/1-1217 PDAHPILAGD GHPELGSDGH PVPGTA