KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:00:39 2014 Check: 00 .. Name: ENSP00000219271/1-669 Len: 678 Check: 2598 Weight: 1.00 Name: ENSBTAP00000017168/1-675 Len: 678 Check: 1522 Weight: 1.00 Name: bmy_17216T0/1-656 Len: 678 Check: 9602 Weight: 1.00 Name: ENSTTRP00000007994/1-620 Len: 678 Check: 7512 Weight: 1.00 // 1 50 ENSP00000219271/1-669 MGSDPSAPGR PGWTGSLLGD REEAARPRLL PLLLVLLGCL GLGVAAEDAE ENSBTAP00000017168/1-675 MGSDRSAPGR PGWAGSLLGG REAATRPQLL PLLLVLLSCL GRGAAAEDAE bmy_17216T0/1-656 TRREVVAGGD GGGGERWWDA GHA------- --------CL EVAV----PE ENSTTRP00000007994/1-620 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000219271/1-669 VHAENWLRLY GYLPQPSRHM STMRSAQILA SALAEMQRFY GIPVTGVLDE ENSBTAP00000017168/1-675 VNAENWLRLY GYLPQPSRHM STMRSAQILA SALAEMQRFY GIPVTGVLDE bmy_17216T0/1-656 PADQNWLRLY GYLPQPSRHM STMRSAQILA SALAEMQRFY GIPITGVLDE ENSTTRP00000007994/1-620 ----NWLRLY GYLPQPSRHM STMRSAQILA SALAEMQRFY GIPITGVLDE 101 150 ENSP00000219271/1-669 ETKEWMKRPR CGVPDQFGVR VKANLRRRRK RYALTGRKWN NHHLTFSIQN ENSBTAP00000017168/1-675 ETKAWMKRPR CGVPDQFGVR VKANLRRRRK RYALTGRKWN NHHLTFSIQN bmy_17216T0/1-656 ETKAWMKRPR CGVPDQFGVR VKANLRRRRK RYALTGRKWN NHHLTFSIQN ENSTTRP00000007994/1-620 ETKAWMKRPR CGVPDQFGVR VKANL-RRRK RYALTGRKWN NHHLTFSIQN 151 200 ENSP00000219271/1-669 YTEKLGWYHS MEAVRRAFRV WEQATPLVFQ EVPYEDIRLR RQKEADIMVL ENSBTAP00000017168/1-675 YTEKLGWYHS LEAVRRAFRV WEQATPLVFQ EVPYEDIRLR RQKEADIMVL bmy_17216T0/1-656 YTEKLGWYHS LEAVRRAFRV WEQATPLVFQ EVPYEDIRLR RQKEADIMVL ENSTTRP00000007994/1-620 YTEKLGWYHS LEAVRRAFRV WEQATPLVFQ EVPYEDIRLR RQKEADIMVL 201 250 ENSP00000219271/1-669 FASGFHGDSS PFDGTGGFLA HAYFPGPGLG GDTHFDADEP WTFSSTDLHG ENSBTAP00000017168/1-675 FASGFHGDSS PFDGTGGFLA HAYFPGPGLG GDTHFDADEP WTFSSTDLHG bmy_17216T0/1-656 FASGFHGDSS PFDGTGGFLA HAYFPGPGLG GDTHFDADEP WTFSSTDLHG ENSTTRP00000007994/1-620 FASGFHGDSS PFDGTGGFLA HAYFPGPGLG GDTHFDADEP WTFSSTDLHG 251 300 ENSP00000219271/1-669 NNLFLVAVHE LGHALGLEHS SNPNAIMAPF YQWKDVDNFK LPEDDLRGIQ ENSBTAP00000017168/1-675 NSLFLVAVHE LGHALGLEHS SNPSAIMAPF YQWMDIDNFQ LPEDDLRGIQ bmy_17216T0/1-656 NSLFLVAVHE LGHALGLEHS SNPSAIMAPF YQWMDIDNFQ LPEDDLRGIQ ENSTTRP00000007994/1-620 NSLFLVAVHE LGHALGLEHS SNPSAIMAPF YQWMDIDNFQ LPEDDLRGIQ 301 350 ENSP00000219271/1-669 QLYGTPDGQP QPTQPLPTVT PRRPGRPDHR PPRPPQPPPP GGKPERPPKP ENSBTAP00000017168/1-675 QLYGTPDGQP QPTQPLPTVT PRRPGRPDHR PPRPPQPPPP GGKPERPPKP bmy_17216T0/1-656 QLYGTPDGQP QPTRPLPTVT PRRPGRPDHR PPRPPQPPPP GGKPEQPPKP ENSTTRP00000007994/1-620 QLYGTPDGQP QPTRPLPTVT PRRPGRPDHW PPRPPQLPPP GGKPEQPPKP 351 400 ENSP00000219271/1-669 GPPVQPRATE RPDQYGPNIC DGDFDTVAML RGEMFVFKGR WFWRVRHNRV ENSBTAP00000017168/1-675 GPPPQPRATE RPDQYGPNIC DGDFDTVAML RGEMFVFKGR WFWRVRHNRV bmy_17216T0/1-656 GPPAQPRATE RPDQYGPNIC DGNFDTVAVL RGEMFVFKGR WFWRVRHNRV ENSTTRP00000007994/1-620 GPPAQPRATE RPDQYGPNIC DGDFDTVAVL RGEMFVFKGR WFWRVRHNRV 401 450 ENSP00000219271/1-669 LDNYPMPIGH FWRGLPGDIS AAYERQDGRF VFFKGDRYWL FREANLEPGY ENSBTAP00000017168/1-675 LDNYPMPIGH FWRGLPSDIS AAYERQDGRF VFFKGDRYWL FREANLEPGY bmy_17216T0/1-656 LDNYPMPIGH FWRGLPSDIS AAYERQDGRF VFFKGDRYWL FREANLEPGY ENSTTRP00000007994/1-620 LDNYPMPIGH FWRGLPSDIS AAYERQDGRF VFFKGGRYWL FREANLEPGY 451 500 ENSP00000219271/1-669 PQPLTSYGLG IPYDRIDTAI WWEPTGHTFF FQEDRYWRFN EETQRGDPGY ENSBTAP00000017168/1-675 PQPLTSYGLG IPYDRIDTAI WWEPTGHTFF FQEDRYWRFN EETQRGDPGY bmy_17216T0/1-656 PQPLTSYGLG IPYDRIDTAI WWEPTGHTFF FQEDRYWRFN EDTQRGDPGY ENSTTRP00000007994/1-620 PQPLTSYGLG IPYDRIDTAI WWEPTGHTFF FQEDRYWRFN EDTQRGDPGY 501 550 ENSP00000219271/1-669 PKPISVWQGI PASPKGAFLS NDAAYTYFYK GTKYWKFDNE RLRMEPGYPK ENSBTAP00000017168/1-675 PKPISVWQGI PASPKGAFLS NDAAYTYFYK GTKYWKFDNE RLRMEPGYPK bmy_17216T0/1-656 PKPISVWQGI PTSPKGAFLS NDAAYTYFYK GTKYWKFDNE RLRMEPGYPK ENSTTRP00000007994/1-620 PKPISVWQGI PTSPKGAFLS NDAAYTYFYK GTKYWKFDNE RLRMEPGYPK 551 600 ENSP00000219271/1-669 SILRDFMGCQ EHVEPGPRWP DVARPPFNPH GGAEPGA--D SAEGDV---G ENSBTAP00000017168/1-675 SILRDFMGCQ EHVEPGPRWP DVARPPFNPD GGAEPGMGGD SEEGEEGGEA bmy_17216T0/1-656 SILRDFMGCQ EHVEPGPRWP DVARPPFNPD GGAEPGAGGD SEEGREAGPG ENSTTRP00000007994/1-620 SILRDFMGCQ EHVEPGPRWP DVARPPFNPD GGAEPGAGGD SEEGNE---G 601 650 ENSP00000219271/1-669 DGDGDFGAGV NKDGGSRVVV QMEEVARTVN VVMVLV-PLL LLLCVLGLTY ENSBTAP00000017168/1-675 GPGGGGEAGP DEDGGSRVVV QMEEVTRTVN MVMVLVPPVL LLLCILGLTY bmy_17216T0/1-656 GKEGDFGEGT DEDGGSRVVV QMEEVTRTVN MVMVLVPPML LLLCILGLTY ENSTTRP00000007994/1-620 HEEGDFGEGT DEDGGSRVVV QMEEVTRTVN MVMVLVPPML LLLCILGLTY 651 700 ENSP00000219271/1-669 ALVQMQRKGA PRVLLYCKRS LQEWV--- ENSBTAP00000017168/1-675 ALVQMQRKGA PRMLLYCKRS LQEWV--- bmy_17216T0/1-656 ALVQMQRKGA PRMLLYCKRS LQEWV--- ENSTTRP00000007994/1-620 ALVQMQRKGA PRMLLYCKRS LQEWVPSA