KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:43 2014 Check: 00 .. Name: BACU011910/1-877 Len: 954 Check: 7467 Weight: 1.00 Name: ENSTTRP00000005217/1-410 Len: 954 Check: 5358 Weight: 1.00 Name: bmy_00781T0/1-610 Len: 954 Check: 4881 Weight: 1.00 Name: ENSP00000378669/1-418 Len: 954 Check: 3216 Weight: 1.00 Name: ENSBTAP00000017177/1-364 Len: 954 Check: 8695 Weight: 1.00 // 1 50 BACU011910/1-877 MMAPTRHQET GPAAASPHAA LNHSSGCDRA PPHLLITPSS CAIQASSSPW ENSTTRP00000005217/1-410 ---------- ---------- ---------- ---------- ---------- bmy_00781T0/1-610 MRRRHSRRGT PGTAAASPPP LASPRRLLAL PVRALAALSS AGARSRLTSG ENSP00000378669/1-418 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017177/1-364 ---------- ---------- ---------- ---------- ---------- 51 100 BACU011910/1-877 NPTPAPVSSP SLL------- ---------- ---------- ---------- ENSTTRP00000005217/1-410 ---------- ---------- ---------- ---------- ---------- bmy_00781T0/1-610 FGYNATHAAS AQPEAGAAPG RWTGPAAGEA EPHAPKRAKQ GGLGKEKGEG ENSP00000378669/1-418 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017177/1-364 ---------- ---------- ---------- ---------- ---------- 101 150 BACU011910/1-877 ---------- ---------- ---LPIPAIV VLAVGIYLLL LGLVLLTRHC ENSTTRP00000005217/1-410 ---------- ---------- ---------- ---------- ---------- bmy_00781T0/1-610 GEGPRDPRDV ARVTSEGDGV GEGIVFSPHC PRPSAASGLR LSGAGLSHSP ENSP00000378669/1-418 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017177/1-364 ---------- ---------- ---------- ---------- ---------- 151 200 BACU011910/1-877 LLAQGCCTDC SSPCRKQGAS RPQDCCWTCA EACDFPLPSP AHYLDACCPQ ENSTTRP00000005217/1-410 ---------- -MAERKPGGS GFHVTCLSMA LA--FP---- --F------- bmy_00781T0/1-610 LPAIGRRGAS GPRRREKPRG GWSGAFIRRG TASCLPAPAR PPRELSRLRS ENSP00000378669/1-418 ---------- -MARRKPEGS SFNMTHLSMA MAFSFPP--- ---------- ENSBTAP00000017177/1-364 ---------- ---------- ---------- ---------- ---------- 201 250 BACU011910/1-877 PAESV----- --NASIQPHP QLGNTQQQTE --------LG KEL--TGTMP ENSTTRP00000005217/1-410 ---TP----- --DASIQPHP QLGNT--QTE --------LG KEP--TGTMP bmy_00781T0/1-610 PWNAPQNQSP GDDCGVRSLS SLASPRPSTA APCQSAPLLC QEL--TGTMP ENSP00000378669/1-418 ---------- --VASGQLHP QLGNTQHQTE --------LG KELATTSTMP ENSBTAP00000017177/1-364 ---------- ---------- ---------- ---------- --------MP 251 300 BACU011910/1-877 HQHPALTPEQ KKELSDIAHR IVAPGKGILA ADESTGSIAK RLQSIGTENT ENSTTRP00000005217/1-410 HQYPALTPEQ KKELSDIAHR IVAPGKGILA ADESTGSIAK RLQSIGTENT bmy_00781T0/1-610 HQYPALTPEQ KKELSDIAHR IVAPGKGILA ADESTGSIAK RLQSIGTENT ENSP00000378669/1-418 YQYPALTPEQ KKELSDIAHR IVAPGKGILA ADESTGSIAK RLQSIGTENT ENSBTAP00000017177/1-364 HQYPALTPEQ KKELCDIAHR IVAPGKGILA ADESTGSIAK RLQSIGTENT 301 350 BACU011910/1-877 EENRRFYRQL LLTADDRVNP CIGGVILFHE TLYQKTDDGR PFPQVIKAKG ENSTTRP00000005217/1-410 EENRRFYRQL LLTADDRVNP CIGGVILFHE TLYQKTDDGR PFPQVIKAKG bmy_00781T0/1-610 EENRRFYRQL LLTADDRVNP CIGGVILFHE TLYQKTDDGR PFPQVIKAKG ENSP00000378669/1-418 EENRRFYRQL LLTADDRVNP CIGGVILFHE TLYQKADDGR PFPQVIKSKG ENSBTAP00000017177/1-364 EENRRFYRQL LLTADDRVNP CIGGVILFHE TLYQKADDGR PFPQVIKAKG 351 400 BACU011910/1-877 GVVGIKVDKG VVPLAGTNGE TTTQGLDGLS ERCAQYKKDG ADFAKWRCVL ENSTTRP00000005217/1-410 GVVGIKVDKG VVPLAGTNGE TTTQGLDGLS ERCAQYKKDG ADFAKWRCVL bmy_00781T0/1-610 GVVGIKVDKG VVPLAGTNGE TTTQGLDGLS ERCAQYKKDG ADFAKWRCVL ENSP00000378669/1-418 GVVGIKVDKG VVPLAGTNGE TTTQGLDGLS ERCAQYKKDG ADFAKWRCVL ENSBTAP00000017177/1-364 GVVGIKVDKG VVPLAGTNGE TTTQGLDGLS ERCAQYKKDG ADFAKWRCVL 401 450 BACU011910/1-877 KIGEHTPSAL AIMENANVLA RYASICQQNG IVPIVEPEIL PDGDHDLKRC ENSTTRP00000005217/1-410 KIGEHTPSTL AIMENANVLA RYASICQQNG IVPIVEPEIL PDGHDN--RC bmy_00781T0/1-610 KIGEHTPSTL AIMENANVLA RYASICQQNG IVPIVEPEIL PDGDHDLKRC ENSP00000378669/1-418 KIGEHTPSAL AIMENANVLA RYASICQQNG IVPIVEPEIL PDGDHDLKRC ENSBTAP00000017177/1-364 KIGEHTPSSL AIMENANVLA RYASICQQNG IVPIVEPEIL PDGDHDLKRC 451 500 BACU011910/1-877 QYVTEKVLAA VYKALSAHHV YLEGTLLKPN MVTPGHACTH KYSHEEIAMA ENSTTRP00000005217/1-410 QYC-EKVLTA VYKTLSDHHI YLEGTLLK-N MVTPDHACTH KYSHEEIAMA bmy_00781T0/1-610 QYVTEKVLAA VYKALSAHHV YLEGTLLKPN MVTPGHACTH KYSHEEIAMA ENSP00000378669/1-418 QYVTEKVLAA VYKALSDHHI YLEGTLLKPN MVTPGHACTQ KFSHEEIAMA ENSBTAP00000017177/1-364 QYVTEKVLAA VYKALSDHHI YLEGTLLKPN MVTPGHACTQ KYSHEEIAMA 501 550 BACU011910/1-877 TVTALRRTVP PAVPGITFLS GGQSEEEASI NLSAINKCHL LKPWALTFSY ENSTTRP00000005217/1-410 TVTALRRTVP PAVPGITFLS GGQSEEEASI NLSAINKCPL LKPWALTFSY bmy_00781T0/1-610 TVTALRRTVP PAVPGITFLS GGQSEEEASI NLSAINKCHL LKPWALTFSY ENSP00000378669/1-418 TVTALRRTVP PAVTGITFLS GGQSEEEASI NLNAINKCPL LKPWALTFSY ENSBTAP00000017177/1-364 TVTALRRTVP PAVPGITFLS GGQSEEEASI NLNAINKCPL LKPWALTFSY 551 600 BACU011910/1-877 GRALQASALK AWGGKKENLK AAQEEYIKRA LANSLACQGK YTPSAPIGLA ENSTTRP00000005217/1-410 GRALQASALK TWGGKKENLK AAQEEYVKRA LANSLACQGK YTPS------ bmy_00781T0/1-610 GRALQASALK AWGGKKENLK AAQEEYIKRA LANSLACQGK YTPG------ ENSP00000378669/1-418 GRALQASALK AWGGKKENLK AAQEEYVKRA LANSLACQGK YTPS------ ENSBTAP00000017177/1-364 GRALQASALK AWGGKKENLK AAQEEYVKRA LANSLACQGK YTPS------ 601 650 BACU011910/1-877 HNHFRPLVAD IRFLGLISTL RLEGVGRPLC GAEGAAAPAL TRAGGWAMAE ENSTTRP00000005217/1-410 ---------- ---------- ---------- GKAGAAA--- ---------- bmy_00781T0/1-610 ---------- ---------- ---------- GKAGAAA--- ---------- ENSP00000378669/1-418 ---------- ---------- ---------- GQAGAAA--- ---------- ENSBTAP00000017177/1-364 ---------- ---------- ---------- GKAGAAA--- ---------- 651 700 BACU011910/1-877 ISDLDRQIEQ LRRCELIKES EVKALCAKAR EILVEESNVQ RVDSPVTVCG ENSTTRP00000005217/1-410 ---------- ---------- ---------- ---------- ---------- bmy_00781T0/1-610 ---------- ---------- ---------- ---------- ---------- ENSP00000378669/1-418 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017177/1-364 ---------- ---------- ---------- ---------- ---------- 701 750 BACU011910/1-877 DIHGQFYDLK ELFRVGGDVP ETNYLFMGDF VDRGFYSVET FLLLLALKVR ENSTTRP00000005217/1-410 ---------- ---------- -SESLFI--- ---------- ---------- bmy_00781T0/1-610 ---------- ---------- -SESLFI--- ---------- ---------- ENSP00000378669/1-418 ---------- ---------- -SESLFV--- ---------- ---------- ENSBTAP00000017177/1-364 ---------- ---------- -SESLFI--- ---------- ---------- 751 800 BACU011910/1-877 YPDRITLIRG NHESRQITQV YGFYDECLRK YGSVTVWRYC TEIFDYLSLS ENSTTRP00000005217/1-410 ---------- ---------- ---------- ---------- ---------- bmy_00781T0/1-610 ---------- ---------- ---------- ---------- ---------- ENSP00000378669/1-418 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017177/1-364 ---------- ---------- ---------- ---------- ---------- 801 850 BACU011910/1-877 AIIDGKIFCV HGGLSPSIQT LDQIRTIDRK QEVPHDGPMC DLLWSDPEDT ENSTTRP00000005217/1-410 ---------- ---------- ---------- ---------- ---------- bmy_00781T0/1-610 ---------- ---------- ---------- ---------- ---------- ENSP00000378669/1-418 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017177/1-364 ---------- ---------- ---------- ---------- ---------- 851 900 BACU011910/1-877 TGWGVSPRGA GYLFGSDVVA QFNAANDIDM ICRAHQLVME GYKWHFNETV ENSTTRP00000005217/1-410 ---------- ---------- ---------- ---------- ---------- bmy_00781T0/1-610 ---------- ---------- ---------- ---------- ---------- ENSP00000378669/1-418 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017177/1-364 ---------- ---------- ---------- ---------- ---------- 901 950 BACU011910/1-877 LTVWSAPNYC YRCGNVAAIL ELDEHLQKDF IIFEAAPQET RGIPSKKPVA ENSTTRP00000005217/1-410 ------SNHA Y--------- ---------- ---------- ---------- bmy_00781T0/1-610 ------SNHA Y--------- ---------- ---------- ---------- ENSP00000378669/1-418 ------SNHA Y--------- ---------- ---------- ---------- ENSBTAP00000017177/1-364 ------SNHA Y--------- ---------- ---------- ---------- 951 1000 BACU011910/1-877 DYFL ENSTTRP00000005217/1-410 ---- bmy_00781T0/1-610 ---- ENSP00000378669/1-418 ---- ENSBTAP00000017177/1-364 ----