KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:43 2014 Check: 00 .. Name: ENSBTAP00000017188/1-416 Len: 527 Check: 6250 Weight: 1.00 Name: ENSP00000281182/1-415 Len: 527 Check: 5880 Weight: 1.00 Name: ENSTTRP00000002207/1-415 Len: 527 Check: 6258 Weight: 1.00 Name: BACU010142/1-362 Len: 527 Check: 592 Weight: 1.00 Name: bmy_12584T0/1-466 Len: 527 Check: 1440 Weight: 1.00 // 1 50 ENSBTAP00000017188/1-416 MMLRGGCQRV GARLRGLRRG PRGPADGARR GVVSCIDPSM GLSEEQKEFQ ENSP00000281182/1-415 -MLWSGCRRF GARLGCLPGG LRVLVQTGHR SLTSCIDPSM GLNEEQKEFQ ENSTTRP00000002207/1-415 -MLWVPWWRV GARLRGLRGG LQAPAESGRR GVVSCIDPST GLNEEQKEFQ BACU010142/1-362 ---------- ---------- ---------- ---------- ---------- bmy_12584T0/1-466 -MLVRPC--- ---------- ----TDRPYR ALRYEPGAST GLNEEQKEFQ 51 100 ENSBTAP00000017188/1-416 KVAFNFAARE MAPHMAEWDQ KELFPVDTMR KAAQLGFGGV YVQTDVGGAG ENSP00000281182/1-415 KVAFDFAARE MAPNMAEWDQ KELFPVDVMR KAAQLGFGGV YIQTDVGGSG ENSTTRP00000002207/1-415 KVAFNFAARE MAPNMAEWDQ KELFPVDVMR KAAQLGFGGI YVRTDVGGSG BACU010142/1-362 ---------- MAPNMAEWDQ KELFPVDVMR KAAQLGFGGI YVRTDVGGSG bmy_12584T0/1-466 KVAFDFAARE MAPNMAEWDQ KELFPVDVMR KAAQLGFGGI YVRTDVGGSG 101 150 ENSBTAP00000017188/1-416 LSRLDTSVIF EALATGCTST TAYMSIHNMC VWIIDRFGSE EQRHRLCPPL ENSP00000281182/1-415 LSRLDTSVIF EALATGCTST TAYISIHNMC AWMIDSFGNE EQRHKFCPPL ENSTTRP00000002207/1-415 LSRLDTSVIF EALATGCTST TAYISIHNMC AWMIDTFGSE EQRHRFCPPL BACU010142/1-362 LSRLDTSVIF EALATGCTST TAYISIHNMC AWMIDTFGSE EQRHRFCPPL bmy_12584T0/1-466 LSRLDTSVIF EALATGCTST TAYISIHNMC AWMIDTFGSE EQRHRFCPPL 151 200 ENSBTAP00000017188/1-416 CTMEKFASYC LTEPGSGSDA ASLMTSAVRQ HDHYILNGSK AFISGGGEAD ENSP00000281182/1-415 CTMEKFASYC LTEPGSGSDA ASLLTSAKKQ GDHYILNGSK AFISGAGESD ENSTTRP00000002207/1-415 CTMEKFASYC LTEPGSGSDA ASLLTSAKRR GDHYVLSGSK AFISGGGEAD BACU010142/1-362 CTMEKFASYC LTEPGSGSDA ASLLTSAKRR GDHYVLSGSK AFISGGGEAD bmy_12584T0/1-466 CTMEKFASYC LTEPGSGSDA ASLLTSAKRR GDHYVLSGSK AFISGGGEAD 201 250 ENSBTAP00000017188/1-416 IYVVMCRTGG PGPRGISCVV VEKGTPGLSF GKKEKK---- ---------- ENSP00000281182/1-415 IYVVMCRTGG PGPKGISCIV VEKGTPGLSF GKKEKK---- ---------- ENSTTRP00000002207/1-415 IYVVMCRTGG PGPKGISCIV VEKGTPGLSF GKKERK---- ---------- BACU010142/1-362 IYVVMCRTGG PGPKGISCIV VEKGTPGLSF GKKERK---- ---------- bmy_12584T0/1-466 IYVVMCRTGG PGPKGISCIV VEKGTPGLSF GKKERKVSAV GQGESGFLEG 251 300 ENSBTAP00000017188/1-416 ---------- ---------- ---------- VGWNSQPTQA VIFEDCAVPV ENSP00000281182/1-415 ---------- ---------- ---------- VGWNSQPTRA VIFEDCAVPV ENSTTRP00000002207/1-415 ---------- ---------- ---------- VGWNSQPTRA VIFEDCAVPV BACU010142/1-362 ---------- ---------- ---------- ------PTRA VIFEDCAVPV bmy_12584T0/1-466 LSPGIGEPGG EDAALSGQLL GSHTAPDFCQ VGWNSQPTRA VIFEDCAVPV 301 350 ENSBTAP00000017188/1-416 ANRIGDEGQG FLIAMKGLNG GRINVASCSL GAAHASIVLA RDYLKVRKQF ENSP00000281182/1-415 ANRIGSEGQG FLIAVRGLNG GRINIASCSL GAAHASVILT RDHLNVRKQF ENSTTRP00000002207/1-415 ANRIGDEGQG FLIAMRGLNG GRINVASCSL GAAYASVILT RDHLKVRKQF BACU010142/1-362 ANRIGDEGQG FLIAMRGLNG GRINVASCSL GAAYASVILT RDHLKVRKQF bmy_12584T0/1-466 ANRIGDEGQG FLIAMRGLNG GRINVASCSL GAAYASVILT RDHLKVRKQF 351 400 ENSBTAP00000017188/1-416 GEPLANSQYL QFQLADMAAR LVASRLMIRT AATALQEERE DAIVLCSMAK ENSP00000281182/1-415 GEPLASNQYL QFTLADMATR LVAARLMVRN AAVALQEERK DAVALCSMAK ENSTTRP00000002207/1-415 GEPLASNQYL QFKLADMVAR LVASRLMIRN AAVALQEERE DAVALCSMAK BACU010142/1-362 GEPLASNQ-- ---------- ---------- ---------- ---------- bmy_12584T0/1-466 GEPLASNQYL QFKLADMVAR LVASRLMIRH AAVALQEGRE DAVALCSMAK 401 450 ENSBTAP00000017188/1-416 LFATDECFAI CNQALQMHGG YGYLKDYAVQ QYVRDSRVHQ ILEGSN---- ENSP00000281182/1-415 LFATDECFAI CNQALQMHGG YGYLKDYAVQ QYVRDSRVHQ ILEGSN---- ENSTTRP00000002207/1-415 LFATDECFAI CNQALQMHGG YGYLKDCAVQ QYMRDSRVHQ ILEXXX---- BACU010142/1-362 ---------I CNQALQMHGG YGYLKDCAVQ QYMRDSRVHQ ILEGKRGQGG bmy_12584T0/1-466 LFATDECFAI CNQALQMHGG YGYLKDCAVQ QYMRDSRVHQ ILEGKSGQGG 451 500 ENSBTAP00000017188/1-416 ---------- -----EVMRM LISRSLLQE- ---------- ---------- ENSP00000281182/1-415 ---------- -----EVMRI LISRSLLQE- ---------- ---------- ENSTTRP00000002207/1-415 ---------- -----XXXXX XXXXXXLQE- ---------- ---------- BACU010142/1-362 SLPFG----A VCPRAACLPP PCSWPPLEGP AVPSWPGLGA RRPCSVPAEV bmy_12584T0/1-466 SLPFGAVTPA VCPRAACLPP PCSWPPLEGP AVP------- ---------- 501 550 ENSBTAP00000017188/1-416 ---------- ---------- ------- ENSP00000281182/1-415 ---------- ---------- ------- ENSTTRP00000002207/1-415 ---------- ---------- ------- BACU010142/1-362 TKSPPSCPLP LSFIETAQTK VTSEKAF bmy_12584T0/1-466 ---------- ---------- ------F