KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:44 2014 Check: 00 .. Name: ENSP00000341280/1-1246 Len: 1266 Check: 722 Weight: 1.00 Name: bmy_00679T0/1-998 Len: 1266 Check: 8445 Weight: 1.00 Name: ENSBTAP00000017189/1-1248 Len: 1266 Check: 4634 Weight: 1.00 Name: BACU005166/1-494 Len: 1266 Check: 3277 Weight: 1.00 Name: ENSTTRP00000013320/1-1235 Len: 1266 Check: 3147 Weight: 1.00 // 1 50 ENSP00000341280/1-1246 ---------- --MSKERPKR NIIQKKYDDS DGIPWSEERV VRKVLYLSLK bmy_00679T0/1-998 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017189/1-1248 MGGAHTEFTK IADPQPYPGI DSELGAEDDS DGIPWSEERV VRKVLYLSLK BACU005166/1-494 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013320/1-1235 ---------- --MSKERPKR NIIQKKYDDS DGIPWSEERV VRKVLYLSLK 51 100 ENSP00000341280/1-1246 EFKNSQKRQH AEGIAGSLKT VNGLLGNDQS KGLGPASEQS ENEKDDASQV bmy_00679T0/1-998 ---------- -MGVRGTW-- ---------- ---------- ---------- ENSBTAP00000017189/1-1248 EFKNAQKRQH GEGIPGSLKA VNGLLGNGQS KGLGPASEQS ENEKDDASQV BACU005166/1-494 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013320/1-1235 EFKNAQKRQH GEGIAGSLKA VNGLLGNGQS KGLGPASEQS ENEKDDASQV 101 150 ENSP00000341280/1-1246 SSTSNDVSSS DFEEGPSRKR PRLQAQRKFA QSQPNSPSTT PVKIVEPLLP bmy_00679T0/1-998 ---------- ---------- ---------- --QQAASSVV TLFFLSPYFP ENSBTAP00000017189/1-1248 SSTSNDVSSS DFEEGPSRKR PRLQAQRKFA QSQPNSPSTT PVKIVEPLLP BACU005166/1-494 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013320/1-1235 SSTSNDVSSS DFEEGPSRKR PRLQAQRKFA QSQPNSPSTT PVKIVEPLLP 151 200 ENSP00000341280/1-1246 PPATQISDLS KRKPKTEDFL TFLCLRGSPA LPNSMVYFGS SQDEEEVEEE bmy_00679T0/1-998 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017189/1-1248 PPATQISDLS KRKPKTEDFL TFLCLRGSPA LPNSMVYFGS SQDEEDVEEE BACU005166/1-494 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013320/1-1235 PPATQISDLS KRKPKTEDFL TFLCLRGSPA LPNSMVYFGS SQDEEDVEEE 201 250 ENSP00000341280/1-1246 DDETEDVKTA TNNASSSCQS TPRKGKTHKH VHNGHVFNGS SRSTREKEPV bmy_00679T0/1-998 ---------- ---------- ---------- -----VFNGS SRSSREKEPV ENSBTAP00000017189/1-1248 DDETEDVKAA TNNASSSCQS TPRKGKAHKH VHNGHVFNGS SRSSREKDPV BACU005166/1-494 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013320/1-1235 DDETEDVKTA TNNASSSCQS TPRKGKAHKH VHNGHVFNGS SRSSREKEPV 251 300 ENSP00000341280/1-1246 QKHKSKEATP AKEKHSDHRA DSRREQASAN HPAAAPSTGS SAKGLAATHH bmy_00679T0/1-998 QKHKSKEATP AKEKHSDPRA DGRREQASAS HPPAAPSAGS SARGLPA-HH ENSBTAP00000017189/1-1248 QKHKSKEATP AKEKHSDARA DARREQVSAS HPPAAPAAGS SAKGLAAHHH BACU005166/1-494 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013320/1-1235 QKHKSKEATP AKEKHSDPRA DGRREQASTS HPPAAPSAGS SARGLPA-HH 301 350 ENSP00000341280/1-1246 HPPLHRSAQD LRKQVSKVNG VTRMSSLGAG VTSAKKMREV RPSPSKTVKY bmy_00679T0/1-998 HPPLHRSAQD LRKQVSKVGG VTRMSSLGTS AASAKKMREV RPSPSKTVKY ENSBTAP00000017189/1-1248 HPALHRSAQD LRKQVSKVNG VTRMSSLGTS ATSAKKMREV RPSPSKTVKY BACU005166/1-494 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013320/1-1235 HPPLHRSAQD LRKQVSKVGG VTRMSSLGTS AASAKKMREV RPSPSKTVKY 351 400 ENSP00000341280/1-1246 TATVTKGAVT YTKAKRELVK DTKPNHHKPS SAVNHTISGK TESSNAKTRK bmy_00679T0/1-998 TATVTKGTVT YTKAKRELVK ETKPNHHKPS SAVNHTISGK TESSNAKTRK ENSBTAP00000017189/1-1248 TATVTKGTVT YTKAKRELVK ETKPHHHKPS SAVNHTISGK TESSNAKTRK BACU005166/1-494 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013320/1-1235 TATVTKGTVT YTKAKRELVK ETKPNHHKPS SAVNHTISGK TESSNAKTRK 401 450 ENSP00000341280/1-1246 QVLSLGGASK STGPAVNGLK VSGRLNPKSC TKEVGGRQLR EGLQLREGLR bmy_00679T0/1-998 QVLSLGGASK STGHTVNGLK VSGRLNPKSC TKEGGGR--- ---QLREGLR ENSBTAP00000017189/1-1248 QVLSLGGASK STGPAVNGLK VSGRLNPKSC TKEVGGR--- ---QLREGLR BACU005166/1-494 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013320/1-1235 QVLSLGGASK STGHTVNGLK VSGRLNPKSC TKEGGGR--- ---QLREGLR 451 500 ENSP00000341280/1-1246 NSKRRLEEAH QAEKPQSPPK KMKGAAG-PA EGPGKKA--- PAERGLLNGH bmy_00679T0/1-998 NSKRRLEEAT PADKPQSPPK KMKGAAG-AA EGPGRKAAPA PVEKAPPGGH ENSBTAP00000017189/1-1248 NSKRRLEEVP PADKPQSPPK KMKGAAGSAA EGPGRKAAPG PAEKAPLGAP BACU005166/1-494 ---------- ---------- -MKGAAG-AA EGPGRKAAPA PAEKAPPGGH ENSTTRP00000013320/1-1235 NSKRRLEEAP PGDKPQSPPK KMKGEAG-AA EGPGRKAAPA PAEKVPPGGH 501 550 ENSP00000341280/1-1246 VKKEVPERSL ERNRPKRATA GKSTPGRQAH GKAD-SASCE NRSTSQPESV bmy_00679T0/1-998 GKKEVPERSL ERNRPKRVTA GKGPPGRQAH GKPD-GVPCE NRSTSQSEPL ENSBTAP00000017189/1-1248 GKKEAPERSL ERNRPKRAAA GKGPPGRQAH GKPDGGAPCE NRSTSQSEPL BACU005166/1-494 GKKEMPERSL ERNRPKRVTA GKGPPGRQAH GKPD-GVPCE NRSTSQSEPL ENSTTRP00000013320/1-1235 GKKEVPERSL ERNRPKRVSA GKGPPGRQAH GKPD-GAPCE NRSTSQSEPL 551 600 ENSP00000341280/1-1246 HKPQD-SGKA EKGGGKAGWA AMDEIPVLRP SAKEFHDPLI YIESVRAQVE bmy_00679T0/1-998 PRPHEAAAKA EKGAGRAGWA AMDEIPVLRP SAKEFHDPLV YIES------ ENSBTAP00000017189/1-1248 PRPHEGAAKA EKGAGRAGWA AMDEIPVLRP SAKEFHDPLV YIESVRPQVE BACU005166/1-494 PRPHDAAAKA EKGAGRAGWA AMDEIPVLRP SAKEFHDPLV YIESVRPQVE ENSTTRP00000013320/1-1235 PRPHEATAKA EKGAGRAGWA AMDEIPVLRP SAKEFHDPLV YIESVRPQVE 601 650 ENSP00000341280/1-1246 KFGMCRVIPP PDWRPECK-- LNDEMRFVTQ IQHIHKLGRR WGPNVQRLAC bmy_00679T0/1-998 ---------- --WAPGTRGX LGDGGRSCS- --------RA FSPTVP---- ENSBTAP00000017189/1-1248 KYGMCRVIPP PDWRPECK-- LNDEMRFVTQ IQHIHKLGRR WGPNVQRLAC BACU005166/1-494 KYGMCRVIPP PDWRPECK-- LNDEMRFVTQ IQHVHKLGRR WGPNVQRLAC ENSTTRP00000013320/1-1235 KYGMCRVIPP PDWRPECK-- LNDEMRFVTQ IQHIHKLGRR WGPNVQRLAC 651 700 ENSP00000341280/1-1246 IKKHLKSQGI TMDELPLIGG CELDLACFFR LINEMGGMQQ VTDLKKWNKL bmy_00679T0/1-998 ---------- LFPPLTVPGG CELDLACFFR LINEMGGMQQ VTDLKKWNKL ENSBTAP00000017189/1-1248 IKKHLRSQGI TMDELPLIGG CELDLACFFR LINEMGGMQQ VTDLKKWNKL BACU005166/1-494 IRKHLRSQGI AMDELPLIGG CELDLACFFR LINEMGGMQQ VTDLKKWNKL ENSTTRP00000013320/1-1235 IKKHLRSQGI TMDELPLIGG CELDLACFFR LINEMGGMQQ VTDLKKWNKL 701 750 ENSP00000341280/1-1246 ADMLRIPRTA QDRLAKLQEA YCQYLLSYDS LSPEEHRRLE KEVLMEKEIL bmy_00679T0/1-998 ADMLRIPKTA QDRLAKLQEA YCQYLLSYDS LSPEEHRRLE KEVLMEKESL ENSBTAP00000017189/1-1248 ADMLRIPRTA QDRLAKLQEA YCQYLLSYDS LSPEEHRRLE KEVLMEKESL BACU005166/1-494 ADMLRIPKTA QDRLAKLQEA YCQYLLSYDS LSPEEHRRLE KEVLMEKESL ENSTTRP00000013320/1-1235 ADMLRIPKTA QDRLAKLQEA YCQYLLSYDS LSPEEHRRLE KEVLMEKESL 751 800 ENSP00000341280/1-1246 EKRKGPLEGH TENDHHKFHP LPRFEPKNGL IHGVAPRNGF RSKLKEVGQA bmy_00679T0/1-998 ERRKGPLEGH TEQDYNRFHP LPRFEPKNGL INGVAHRNGF RSKLKEVGPA ENSBTAP00000017189/1-1248 ERRKGPLEGH TEQDYHRFHP LPRFEPKNGL INGVAHRNGF RSKLKEVGPA BACU005166/1-494 ERRKGPLEGH TEQDYNRFHP LPRFEPKNGL INGVAHRNGF RSKLKEVGPA ENSTTRP00000013320/1-1235 ERRKGPLEGH TEQDYNRFHP LPRFEPKNGL INGVAHRNGF RSKLKEVGPA 801 850 ENSP00000341280/1-1246 QLKTGRRRLF AQEKEVVKEE EEDKGVLNDF HKCIYKGRSV SLTTFYRTAR bmy_00679T0/1-998 QLKTGRRRLF AQEKEVVKEE EEDKGILSDF HKCIYKGRSV SLTTFYRTAR ENSBTAP00000017189/1-1248 QLKTGRRRLF AQEKEVVKEE EEDKGILSDF HKCIYKGRSV SLTTFYRTAR BACU005166/1-494 QLKTGRRRLF AQEKEVVKEE EEDKGILSDF HKCIYKGRSV SLTTFYRTAR ENSTTRP00000013320/1-1235 QLKTGRRRLF AQEKEVVK-E EDDRGILSDF HKCIYKGRSV SLTTFYRTAR 851 900 ENSP00000341280/1-1246 NIMSMCFSKE PAPAEIEQEY WRLVEEKDCH VAVHCGKVDT NTHGSGFPVG bmy_00679T0/1-998 NIMNMCFSKE PAPAEIEQEY WRLVEEKDCH VAVHCGKVDT NTHGSGFPVG ENSBTAP00000017189/1-1248 NIMNMCFSKE PAPAEIEQEY WRLVEEKDCH VAVHCGKVDT NTHGSGFPVG BACU005166/1-494 NIMNMCFSKE PAPAEIEQEY WRLVEEKDCH VAVHCGKVDT NTHGSGFPVG ENSTTRP00000013320/1-1235 NIMNMCFSKE PAPAEIEQEY WRLVEEKDCH VAVHCGKVDT NTHGSGFPVG 901 950 ENSP00000341280/1-1246 KSEPFSRHGW NLTVLPNNTG SILRHLGAVP GVTIPWLNIG MVFSTSCWSR bmy_00679T0/1-998 KSEPFSRHGW NLTVLPNNTG SILRHLGAVP GVTIPWLNIG MVFSTSCWSR ENSBTAP00000017189/1-1248 KSEPFSRHGW NLTVLPNNTG SILRHLGAVP GVTIPWLNIG MVFSTSCWSR BACU005166/1-494 KSEPFSRHGW NLTVLPNNTG SILRHLGAVP GVTIPWLNIG MVFSTSCWSR ENSTTRP00000013320/1-1235 KSEPFSRHGW NLTVLPNNTG SILRHLGAVP GVTIPWLNIG MVFSTSCWSR 951 1000 ENSP00000341280/1-1246 DQNHLPYIDY LHTGADCIWY CIPAEEENKL EDVVHTLLQA NGTPGLQMLE bmy_00679T0/1-998 DQNHLPYIDY LHTGADCIWY CIPAEEENKL EDVVHTLLQA NGTPGLQMLE ENSBTAP00000017189/1-1248 DQNHLPYIDY LHTGADCIWY CIPAEEEHKL EDVVHTLLQA NGTPGLQMLE BACU005166/1-494 DQNHLPYIDY LHTGADCIW- ---------- ---------- ---------- ENSTTRP00000013320/1-1235 DQNHLPYIDY LHTGADCIXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 1001 1050 ENSP00000341280/1-1246 SNVMISPEVL CKEGIKVHRT VQQSGQFVVC FPGSFVSKVC CGYSVSETVH bmy_00679T0/1-998 SNVMISPEVL CREGIEVHRT VQQSGQFVVC FPGSFVSKVC CGYSVSETVH ENSBTAP00000017189/1-1248 SNVMISPEVL CREGIKVHRT VQQSGQFVVC FPGSFVSKVC CGYSVSETVH BACU005166/1-494 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013320/1-1235 XXXXISPEVL CREGIKVHRT VQQSGQFVVC FPGSFVSKVC CGYSVSETVH 1051 1100 ENSP00000341280/1-1246 FATTQWTSMG FETAKEMKRR HIAKPFSMEK LLYQIAQAEA KKENGPTLST bmy_00679T0/1-998 FATTQWTSMG FETAKEMKRR HIAKPFSMEK LLYQIAQAEA KKENGPTLST ENSBTAP00000017189/1-1248 FATTQWTSMG FETAKEMKRR HIAKPFSMEK LLYQIAQAEA KKENGPTLST BACU005166/1-494 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013320/1-1235 FATTQWTSMG FETAKEMKRR HIAKPFSMEK LLYQIAQAEA KKENGPTLST 1101 1150 ENSP00000341280/1-1246 ISALLDELRD TELRQRRQLF EAGLHSSARY GSHDGSSTVA DGKKKPRKWL bmy_00679T0/1-998 ISALLDELRD TELRQRRQLF EAGLHSSARY GSHEGSSAVP DGKKKPRKWL ENSBTAP00000017189/1-1248 ISALLDELRD TELRQRRQLF EAGLHSSARY GSHDGSSAAP DGKKKPRKWL BACU005166/1-494 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013320/1-1235 ISALLDELRD TELRQRRQLF EAGLHSSARY GSHEGSSAAP DGKKKPRKWL 1151 1200 ENSP00000341280/1-1246 QLETSERRCQ ICQHLCYLSM VVQENENVVF CLECALRHVE KQKSCRGLKL bmy_00679T0/1-998 QLETSERRCQ ICQHLCYLSM VVQENENVVF CLECALRHVE KQKSCRGLKL ENSBTAP00000017189/1-1248 QLETSERRCQ VCQHLCYLSM VVQENENVVF CLECALRHVE KQKSCRGLKL BACU005166/1-494 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013320/1-1235 QLETSERRCQ ICQHLCYLSM VVQENENVVF CLECALRHVE KQKSCRGLKL 1201 1250 ENSP00000341280/1-1246 MYRYDEEQII SLVNQICGKV SGKNGSIENC LSKPTPKRGP RKRATVDVPP bmy_00679T0/1-998 MYRYDEEQII SLVNQICGKV SGKNGSIENC LGKPTPKRGP RKRATVDVPP ENSBTAP00000017189/1-1248 MYRYDEEQII SLVNQICGKV SGKNGSIENC LSKPTPKRGP RKRATVDVPP BACU005166/1-494 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013320/1-1235 MYRYDEEQII SLVNQICGKV SGKNGSIENC LGKPTPKRGP RKRATVDVPP 1251 1300 ENSP00000341280/1-1246 SRLSASSSSK SASSSS bmy_00679T0/1-998 SRLAASSS-- ------ ENSBTAP00000017189/1-1248 SRLASS---- ------ BACU005166/1-494 ---------- ------ ENSTTRP00000013320/1-1235 SRLAAASSS- ------