KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:49 2014 Check: 00 .. Name: ENSP00000298746/1-349 Len: 359 Check: 7907 Weight: 1.00 Name: ENSBTAP00000017209/1-352 Len: 359 Check: 5935 Weight: 1.00 Name: ENSTTRP00000005445/1-262 Len: 359 Check: 8975 Weight: 1.00 Name: bmy_03059T0/1-277 Len: 359 Check: 1650 Weight: 1.00 Name: BACU004675/1-240 Len: 359 Check: 1937 Weight: 1.00 // 1 50 ENSP00000298746/1-349 MAASEA--AV VSSPSLKTDT SPVLETAGTV AAMAATPSAR AAAAVVAAAA ENSBTAP00000017209/1-352 MAAAEAAAAV VLSSFLKADP APVPESAGTA AATAATSSAM AAAAAVAAAA ENSTTRP00000005445/1-262 MAAAEA--AV VSSSSLKPDT TPVPESAGMA AATAATSSAM AAAAAV--AA bmy_03059T0/1-277 MAAAEA--AV VSSSSLKPDT APVPESAGMA AATAATSSAM AAAAAV--AA BACU004675/1-240 ---------- ---------- ---------- ---------M AAAAAV--AS 51 100 ENSP00000298746/1-349 RTGSEARVSK AALATKLLSL SGVFAVHKPK GPTSAELLNR LKEKLLAEAG ENSBTAP00000017209/1-352 RTGSEARVSK PALATKLLSL SGVFAVHKPK GPTSAELLNR LKEKLLAEAG ENSTTRP00000005445/1-262 RTGSEARVSK PALATKLLSL SGVFAVHKPK GPTSAELLNR LKEKLLAEAG bmy_03059T0/1-277 RSGSEARVSK PALATKLLSL SGVFAVHKPK GPTSAELLNR LKEKLLAEAG BACU004675/1-240 RSGSEARVSK PALATKLLSL SGVFAVHKPK GPTSAELLNR LKEKLLAEAG 101 150 ENSP00000298746/1-349 MPSPEWTKRK KQTLKIGHGG TLDSAARGVL VVGIGSGTKM LTSMLSGSKR ENSBTAP00000017209/1-352 MPSPEWTKRK KQTLKIGHGG TLDSAARGVL VVGIGRGTKM LTSMLSGSKR ENSTTRP00000005445/1-262 MPSPEWTKRK KQTLKIGHGG TLDSAARGVL VVGIGRGTKL LTSMLSGSKR bmy_03059T0/1-277 MPSPEWTKRK KQTLKIGHGG TLDSAARGVL VVGIGRGTKL LTSMLSGSKR BACU004675/1-240 MPSPEWTKRK KQTLKIGHGG TLDSAARGVL VVGIGRGTKL LTSMLSGSKR 151 200 ENSP00000298746/1-349 YTAIGELGKA TDTLDSTGRV TEEKPYDKIT QEDIEGILQK FTGNIMQVPP ENSBTAP00000017209/1-352 YVAIGELGKA TDTLDSTGNV TEEKPYDKIT QEDIESILQK FTGNIMQVPP ENSTTRP00000005445/1-262 YIATGELGKA TDTLDSTGKV TEEKPYDKIT QEDIEGILQK FTGNIMQ--- bmy_03059T0/1-277 YIATGELGKA TDTLDSTGKV TEEKPYD--- ---------- ---------- BACU004675/1-240 YIATGELGKA TDTLDSTGKV TEEKPYD--- ---------- ---------- 201 250 ENSP00000298746/1-349 LYSALKKDGQ RLSTLMKRGE VVEAKPARPV TVYSISLQKF QPPFFTLDVE ENSBTAP00000017209/1-352 LYSALKKDGQ RLSTLMKRGE VVEAKPARPV TVYSLSLQKF QPPFFTLDVE ENSTTRP00000005445/1-262 ---------- ---------- ---------- ---------- ---------- bmy_03059T0/1-277 ---------- ---------- ---------- ---------- --------VE BACU004675/1-240 ---------- ---------- ---------- ---------- --------VE 251 300 ENSP00000298746/1-349 CGGGFYIRSL VSDIGKELSS CANVLE-LTR TKQGPFTLEE HALPEDKWTI ENSBTAP00000017209/1-352 CGGGFYIRSL VSDIGKELSS CANVLE-LTR TKQGPFTLEE HALPEDKWTI ENSTTRP00000005445/1-262 ---------- ---------- VPPLYSALKK DGQRLSTLMK RG-------- bmy_03059T0/1-277 CGGGFYIRSL VSDIGKELSS CANVLE-LTR TKQGPFTLEE HALPEDRWTI BACU004675/1-240 CGGGFYIRSL VSDIGKELSS CANVLE-LTR TKQGPFTLEE HALPEDRWTI 301 350 ENSP00000298746/1-349 DDIAQSLEHC SSLFPAELAL KKSKP-ESNE QVLSCEYITL NEPKREDDVI ENSBTAP00000017209/1-352 DDIAQSLQRC SSLLPAELAL KKSKPEESNE QVLSCECITL NETKGEDDVI ENSTTRP00000005445/1-262 -EVVEAKP-A RPVTVYSLSL QKFQP----- -----PFFTL DVECGGGFYI bmy_03059T0/1-277 DDIAQSLEQC SSLLPAEMAL KKSKPEESSE QVLSCEYITL SEIKGEDDVI BACU004675/1-240 DDIAQSLEQC SSLLPAEMAL KKSKPEESSE QVLSCEYITL SEIKGEDDVI 351 400 ENSP00000298746/1-349 KTC------ ENSBTAP00000017209/1-352 KTL------ ENSTTRP00000005445/1-262 RSLVSDIGR bmy_03059T0/1-277 KTF------ BACU004675/1-240 KTF------