KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:00:53 2014 Check: 00 ..
Name: BACU018356/1-319 Len: 350 Check: 9671 Weight: 1.00
Name: ENSTTRP00000000347/1-319 Len: 350 Check: 8842 Weight: 1.00
Name: ENSP00000361635/1-309 Len: 350 Check: 9020 Weight: 1.00
Name: ENSBTAP00000017251/1-294 Len: 350 Check: 2026 Weight: 1.00
Name: bmy_10651T0/1-283 Len: 350 Check: 2776 Weight: 1.00
//
1 50
BACU018356/1-319 ---------- ---------- ------MCIP PSYADLGKAA RDIFNQGFGF
ENSTTRP00000000347/1-319 ---------- ---------- ------MCIP PSYADLGKAA RDIFNKGFGF
ENSP00000361635/1-309 MSWCNELRLP ALKQHSIGRG LESHITMCIP PSYADLGKAA RDIFNKGFGF
ENSBTAP00000017251/1-294 ---------- -----MATYG QNCARPMCIP PSYADLGKAA RDIFNKGFGF
bmy_10651T0/1-283 ---------- ---------- ------MCIP PSYADLGKAA RDIFNKGFGF
51 100
BACU018356/1-319 GLVKLDVKTK SCSGVEFSTS GSSNADTGKV TGTLETKYKW CECGLTFTEK
ENSTTRP00000000347/1-319 GLVKLDVKTK SCSGVEFSTS GSSNTDTGKV TGTLETKYKW CEYGLTFTEK
ENSP00000361635/1-309 GLVKLDVKTK SCSGVEFSTS GSSNTDTGKV TGTLETKYKW CEYGLTFTEK
ENSBTAP00000017251/1-294 GLVKLDVKTK SCSGVEFSTS GSSNTDTGKV TGTLETKYKW CEYGLTFTEK
bmy_10651T0/1-283 GLVKLDVKTK SCSGVEFSTS GSSNTDTGKV TGTLETKYKW CEYGLTFTEK
101 150
BACU018356/1-319 CNTDN---TE IALEDQICQG LKLTFDTTFS PN-GKKSGKI KSSYKRGCIN
ENSTTRP00000000347/1-319 WNTDNTLGTE IAIEDQICQG LKLTFDTTFS PNTGKKSGKI KSSYKRECMN
ENSP00000361635/1-309 WNTDNTLGTE IAIEDQICQG LKLTFDTTFS PNTGKKSGKI KSSYKRECIN
ENSBTAP00000017251/1-294 WNTDNTLGTE IAIEDQICQG LKLTFDTTFS PNTGKKSGKI KSSYKRECIN
bmy_10651T0/1-283 WNTDNTLGTE IAIEDQICQG LKLTFDTTFS PNTGKKSGKI KSSYKRECIN
151 200
BACU018356/1-319 LGCGVDFDFA GLAIHGXXXX XGFGYEGWLA GYQMTFDSAK SKLTRNNLAV
ENSTTRP00000000347/1-319 LGCDVDFDFA GPAIHGSAV- --FCYEGWLA GYQMTFDSAK SKLTRNNFAV
ENSP00000361635/1-309 LGCDVDFDFA GPAIHGSAV- --FGYEGWLA GYQMTFDSAK SKLTRNNFAV
ENSBTAP00000017251/1-294 LGCDVDFDFA GPAIHGSAV- --FGYEGWLA GYQMTFDSAK SKLTRNNFAV
bmy_10651T0/1-283 LGCDVDFDFA GPAIHGSAV- --FGYEGWLA GYQMTFDSAK SKLTRNNFAV
201 250
BACU018356/1-319 GYRTGDFQLH TKVSDGPEFG GSVYQKVCED LDTSVNLAWT SGTNCTRFGI
ENSTTRP00000000347/1-319 GYRTGDFQLH TNVNDGTEFG GSIYQKVCED LDTSVNLAWT SGTNCTRFGI
ENSP00000361635/1-309 GYRTGDFQLH TNVNDGTEFG GSIYQKVCED LDTSVNLAWT SGTNCTRFGI
ENSBTAP00000017251/1-294 GYRTGDFQLH TNVNDGTEFG GSIYQKVCED LDTSVNLAWT SGTNCTRFGI
bmy_10651T0/1-283 GYRTGDFQLH TNVNDGTEFG GSIYQKVCED LDTSVNLAWT SGTNCTRFGI
251 300
BACU018356/1-319 VAKYRLDLTA SISAKVNNSS LVGMGYTQTL RPGVKLKLSA LVDGKSINAG
ENSTTRP00000000347/1-319 AAKYQLDPTA SISAKVNNSS LIGVGYTQTL RPGVKLTLSA LVDGKSINAG
ENSP00000361635/1-309 AAKYQLDPTA SISAKVNNSS LIGVGYTQTL RPGVKLTLSA LVDGKSINAG
ENSBTAP00000017251/1-294 AAKYQLDPTA SISAKVNNSS LIGVGYTQTL RPGVKLTLSA LVDGKSINAG
bmy_10651T0/1-283 AAKYQLDPTA SISAKVNNSS LIGVGYTQTL RPGVKLTLSA LVDGKSINAG
301 350
BACU018356/1-319 GH-LGLPWSW RNPAERNLWE WISEDMALIY FQCDQQASPA STQEGDQNKG
ENSTTRP00000000347/1-319 GHKLGPWSWR LNPAERNLWE WTSEDLALIY FQCDQQASPP --QEGDQNKG
ENSP00000361635/1-309 GHKVG----- ---------- -----LAL-- ---ELEA--- ----------
ENSBTAP00000017251/1-294 GHKLG----- ---------- -----LAL-- ---ELEA--- ----------
bmy_10651T0/1-283 GHKLG----- ---------- -----LAL-- ---ELEA--- ----------