KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:54 2014 Check: 00 .. Name: bmy_13601T0/1-474 Len: 583 Check: 4685 Weight: 1.00 Name: ENSTTRP00000002586/1-510 Len: 583 Check: 7470 Weight: 1.00 Name: ENSP00000346829/1-543 Len: 583 Check: 4313 Weight: 1.00 Name: BACU009939/1-555 Len: 583 Check: 944 Weight: 1.00 Name: ENSBTAP00000017252/1-541 Len: 583 Check: 3902 Weight: 1.00 // 1 50 bmy_13601T0/1-474 MDFPCNQNVS PKPFEKREAP TTHRIAKLLV SFRFGYGFIV GGSM---SLK ENSTTRP00000002586/1-510 MAGAIIENMS TKKL------ --CIVGGILL LFQI-IAFLV GGLI--GPTT ENSP00000346829/1-543 MAGAIIENMS TKKL------ --CIVGGILL VFQI-IAFLV GGLI--GPTT BACU009939/1-555 MAGAIIENMS TKKL------ --CIVGGILL LFQI-IAFLV GGLIAPGPTT ENSBTAP00000017252/1-541 MAGAIIENMS TKKL------ --CIVGGILL VFQI-IAFLV GGLIAPGPTT 51 100 bmy_13601T0/1-474 AGNYFELN-- --PGSLHSLV SSSPESPGLC G-----DGKM DENWGSSDSV ENSTTRP00000002586/1-510 AVSYMSVKCV DVRKNHHKTK WLMPWGPNQC DKIRDIEEAI PREIEAND-V ENSP00000346829/1-543 AVSYMSVKCV DARKNHHKTK WFVPWGPNHC DKIRDIEEAI PREIEANDIV BACU009939/1-555 AVSYMSVKCV DVRKNHHKTK WLMPWGPNQC DKIRDIEEAI PREIEANDIV ENSBTAP00000017252/1-541 AVSYMSVKCV DVRKNHHKAK WLMPWGPNQC DKIRDIEEAI PREIEANDIV 101 150 bmy_13601T0/1-474 YRISSENQGF T--------- -----TLSNC LQATLGENAE VSMDVSLAYR ENSTTRP00000002586/1-510 FS-HIPL--- ---------- ---------- ---SILENAE VSMDVSLAYR ENSP00000346829/1-543 FSVHIPLPHM EMSPWFQFML FILQLDIAFK LNNQIRENAE VSMDVSLAYR BACU009939/1-555 FSVHIPLPSM EMSPWFQFML FILQLDIAFK LNNQIRENAE VSMDVSLAYR ENSBTAP00000017252/1-541 FSVHIPLPSM EMSPWFQFML FILQLDIAFK LNNQIRENAE VSMDVSLAYR 151 200 bmy_13601T0/1-474 DDMFAEWTEM AHERVPRKLK CTFTSPKTAE HEGRYYECDV LPFMEIGSVA ENSTTRP00000002586/1-510 DDMFAEWTEM AHERVPRKLK CTFTSPKTAE HEGRYYECD- LPFMEIGSVA ENSP00000346829/1-543 DDAFAEWTEM AHERVPRKLK CTFTSPKTPE HEGRYYECDV LPFMEIGSVA BACU009939/1-555 DDMFAEWTEM AHERVPRKLK CTFTSPKTAE HEGRYYECDV LPFMEIGSVA ENSBTAP00000017252/1-541 DDMFAEWTEM AHERVPRKLK CTFTSPKTLE HEGRYYECDV LPFMEIGSVA 201 250 bmy_13601T0/1-474 HKYYLLNIRL PVNEKKKINV GIGEIKDIRL VGIHQNGGFT KVWFAMKTFL ENSTTRP00000002586/1-510 HKYYLLNIRL PVNEKKKINV GIGEIKDIRL VGIHQNGGFT KVWFAMKTFL ENSP00000346829/1-543 HKFYLLNIRL PVNEKKKINV GIGEIKDIRL VGIHQNGGFT KVWFAMKTFL BACU009939/1-555 HKYYLLNIRL PVNEKKKINV GIGEIKDIRL VGIHQNGGFT KVWFAMKTFL ENSBTAP00000017252/1-541 HKYYLLNIRL PVNEKKKINV GIGEIKDIRL VGIHQNGGFT KVWFAMKTFL 251 300 bmy_13601T0/1-474 TPSIFIIMVW YWRRITMMSR PPVLLEKVIF ALGISMTFIN IPVEWFSIGF ENSTTRP00000002586/1-510 TPSIFIIMVW YWRRITMMSR PPVLLEKVIF ALGISMTFIN IPVEWFSIGF ENSP00000346829/1-543 TPSIFIIMVW YWRRITMMSR PPVLLEKVIF ALGISMTFIN IPVEWFSIGF BACU009939/1-555 TPSIFIIMVW YWRRITMMSR PPVLLEKVIF ALGISMTFIN IPVEWFSIGF ENSBTAP00000017252/1-541 TPSIFIIMVW YWRRITMMSR PPVLLEKVIF ALGISMTFIN IPVEWFSIGF 301 350 bmy_13601T0/1-474 DWTWMLL--- ---------- ---------- ---------- ---------- ENSTTRP00000002586/1-510 DWTWMLLFGD IRQGIFYAML LSFWIIFCGE HMMDQHERNH IAGYWKQVGP ENSP00000346829/1-543 DWTWMLLFGD IRQGIFYAML LSFWIIFCGE HMMDQHERNH IAGYWKQVGP BACU009939/1-555 DWTWMLLFGD IRQGIFYAML LSFWIIFCGE HMMDQHERNH IAGYWKQVGP ENSBTAP00000017252/1-541 DWTWMLLFGD IRQGIFYAML LSFWIIFCGE HMMDQHERNH IAGYWKQVGP 351 400 bmy_13601T0/1-474 ---------- ------GVQL TNPFYSIWTT DVGTELA--- ---------- ENSTTRP00000002586/1-510 IAVGSFCLFI FDMCERGVQL TNPFYSIWTT DVGTELAMAF IIVAGICLCL ENSP00000346829/1-543 IAVGSFCLFI FDMCERGVQL TNPFYSIWTT DIGTELAMAF IIVAGICLCL BACU009939/1-555 IAVGSFCLFI FDMCERGVQL TNPFYSIWTT DVGTELAMAF IIVAGICLCL ENSBTAP00000017252/1-541 IAVGSFCLFI FDMCERGVQL TNPFYSIWTT DVGTELAMAF IIVAGICLCL 401 450 bmy_13601T0/1-474 ---------- -VFRNISGKQ SSLSAMSKVR RLHYEGLIFR FKFLMLITLA ENSTTRP00000002586/1-510 YFLFLCFMVF QVFRNISGKQ SSLSAMSKVR RLHYEXXXXX XXXXXXXXXX ENSP00000346829/1-543 YFLFLCFMVF QVFRNISGKQ SSLPAMSKVR RLHYEGLIFR FKFLMLITLA BACU009939/1-555 YFLFLCFMVF QVFRNISGKQ SSLSAMSKVR RLHYEGLIFR FKFLMLITLA ENSBTAP00000017252/1-541 YFLFLCFMVF QVFRNISGKQ SSLPAMSKVR RLHYEGLIFR FKFLMLITLA 451 500 bmy_13601T0/1-474 CAAMTVIFFI VSQVTEGHWK WGGVTVQVNS AFFTGIYGMW NLYVFALMFL ENSTTRP00000002586/1-510 XXXXXXXXXX XXXVTEGHWK WGGVTVQVNS AFFTGIYGMW NLYVFALMFL ENSP00000346829/1-543 CAAMTVIFFI VSQVTEGHWK WGGVTVQVNS AFFTGIYGMW NLYVFALMFL BACU009939/1-555 CAAMTVIFFI VSQVTEGHWK WGGVTVQVNS AFFTGIYGMW NLYVFALMFL ENSBTAP00000017252/1-541 CAAMTVIFFI VSQVTEGHWK WGGVTVQVNS AFFTGIYGMW NLYVFALMFL 501 550 bmy_13601T0/1-474 YAPSHKNYGE DQSNARKGQK STSFHKVAAQ GVIPSHGSSK LGSPIIFLLC ENSTTRP00000002586/1-510 YAPSHKNYGE DQSNGMQ--- ---------- --LPYKSRED --------FV ENSP00000346829/1-543 YAPSHKNYGE DQSNGMQ--- ---------- --LPCKSRED -----CALFV BACU009939/1-555 YAPSHKNYGE DQSNASS--- ---PVKLARP EFLPRRALVR IKYGKNRMVV ENSBTAP00000017252/1-541 YAPSHKNYGE DQSNGD---- ---------- --LGVHSGEE ------LQLT 551 600 bmy_13601T0/1-474 SLPFSSLQPP PDHTMYRRNY GAFVKILKLL GKS ENSTTRP00000002586/1-510 SELYQELFTT WKYSIINNST SGA------- --- ENSP00000346829/1-543 SELYQELFSA SKYSFINDNA ASGI------ --- BACU009939/1-555 SIDAEDAFDK FQPSRIKHQE ---------- --- ENSBTAP00000017252/1-541 TTITHVDGPT EIYKLTRKEA QE-------- ---