KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:55 2014 Check: 00 .. Name: ENSTTRP00000003385/1-309 Len: 311 Check: 5805 Weight: 1.00 Name: ENSP00000361642/1-311 Len: 311 Check: 4993 Weight: 1.00 Name: ENSBTAP00000017259/1-213 Len: 311 Check: 5423 Weight: 1.00 Name: bmy_19890T0/1-311 Len: 311 Check: 4004 Weight: 1.00 Name: BACU000376/1-311 Len: 311 Check: 3949 Weight: 1.00 // 1 50 ENSTTRP00000003385/1-309 MAAVDLVAEF PQPAGAARWA EVMARFAAGL GAQGRRVVLV TSGGTKVPLE ENSP00000361642/1-311 MAEMDPVAEF PQPPGAARWA EVMARFAARL GAQGRRVVLV TSGGTKVPLE ENSBTAP00000017259/1-213 MAAVDLVAEF PQPAGAARWA EVMARFAARL GAQGRRVVLV TSGGTKVPLE bmy_19890T0/1-311 MAAVDLVAEF PQPAGAARWA EVMARFAAGL GAQRRRVVLV TSGGTKVPLE BACU000376/1-311 MAAVDLVAEF PQPAGAARWA EVMARFAARL GAQGRRVVLV TSGGTKVPLE 51 100 ENSTTRP00000003385/1-309 ARPVRFLDNF SSGRRGATSA EAFLAAGYGV LFLYRARSAF PFAHRFPPQT ENSP00000361642/1-311 ARPVRFLDNF SSGRRGATSA EAFLAAGYGV LFLYRARSAF PYAHRFPPQT ENSBTAP00000017259/1-213 ARPVRFLDNF SSGRRGASSA EAFLAAGYGV LFLYRARSAF PFAHRFPPQT bmy_19890T0/1-311 ARPVRFLDNF SSGRRGATSA EAFLAAGYGV LFLYRARSAF PFAHRFPPQT BACU000376/1-311 ARPVRFLDNF SSGRRGATSA EAFLAAGYGV LFLYRARSAF PFAHRFPPQT 101 150 ENSTTRP00000003385/1-309 WLSALRPSGR AASGLLS-EA EE-ALPGFAX XXXXXXXXXX XXXXXXXXXX ENSP00000361642/1-311 WLSALRPSGP ALSGLLSLEA EENALPGFAE ALRSYQEAAA AGTFLAVEFT ENSBTAP00000017259/1-213 WLSVLRPSSQ APSGLLSLEA EEKALPGFAA ALRSYQEAEA AGTFLAIEFT bmy_19890T0/1-311 WLSALRPSGR AASGLLSLEA EEKALPGFAA ALRSYQEAEA AGTFLAIEFT BACU000376/1-311 WLSALRPSGR AASGLLSLEA EEKALPGFAA ALRSYQEAEA AGTFLAIEFT 151 200 ENSTTRP00000003385/1-309 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000361642/1-311 TLADYLHLLQ AAAQALNPLG PSAMFYLAAA VSDFYVPVSE MPEHKIQSSG ENSBTAP00000017259/1-213 TLADYLHLLQ AAAQALNPLG SSAMFYLAAA VSDFYVPASE MPEHKIQSSG bmy_19890T0/1-311 TLADYLHLLQ AAAQALNPLG SSAMFYLAAA VSDFYVPVSE MPEHKIQSSG BACU000376/1-311 TLADYLHLLQ AAAQALNPLG SSAMFYLAAA VSDFYVPVSE MPEHKIQSSG 201 250 ENSTTRP00000003385/1-309 XPLQITMKMV PKMLSPLVKD WAPKAFIISF KLETDPFIVI DRARNALEIY ENSP00000361642/1-311 GPLQITMKMV PKLLSPLVKD WAPKAFIISF KLETDPAIVI NRARKALEIY ENSBTAP00000017259/1-213 GPLQVMGASL PEI------- ---------- ---------- ---------- bmy_19890T0/1-311 GPLQITMKMV PKMLSPLVKD WAPKAFIISF KLETDPSIVI DRARNALEIY BACU000376/1-311 GPLQITMKMV PKMLSPLVKD WAPKAFIISF KLETDPSIVI DRARNALEIY 251 300 ENSTTRP00000003385/1-309 RHQVVVANIL DSRRSFVVII TKESETKLLL SEEEVGKGIE IEEKIVDDLQ ENSP00000361642/1-311 QHQVVVANIL ESRQSFVFIV TKDSETKLLL SEEEIEKGVE IEEKIVDNLQ ENSBTAP00000017259/1-213 ---------- ---------- ---------- ---------- ---------- bmy_19890T0/1-311 RHQVVVANIL DSRRSFVVII TKDSETKLLL SEEEVGKGIE IEEKIVDDLL BACU000376/1-311 RHQVVVANIL DSRRSFVVII TKDSETKLLL SEEEVGKGIE IEEKIVDDLL 301 350 ENSTTRP00000003385/1-309 SRHTAFIHDK N ENSP00000361642/1-311 SRHTAFIGDR N ENSBTAP00000017259/1-213 ---------- - bmy_19890T0/1-311 SRHTAFIHDK N BACU000376/1-311 SRHTAFIHDK N