KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:55 2014 Check: 00 .. Name: ENSP00000268097/1-529 Len: 531 Check: 5364 Weight: 1.00 Name: ENSBTAP00000017261/1-529 Len: 531 Check: 2644 Weight: 1.00 Name: bmy_10986T0/1-506 Len: 531 Check: 3094 Weight: 1.00 Name: BACU017941/1-492 Len: 531 Check: 9644 Weight: 1.00 Name: ENSTTRP00000002348/1-529 Len: 531 Check: 9665 Weight: 1.00 // 1 50 ENSP00000268097/1-529 MTSSRLWFSL LLAAAFAGRA TALWPWPQNF QTSDQRYVLY PNNFQFQYDV ENSBTAP00000017261/1-529 MAGSTLRFSL LLAAAFAGRA TALWPWPQYI QTSELRYTIF PQSFQFQYHL bmy_10986T0/1-506 MAGSTLWFSL LLAAAFAGRA TALWPWPQYI QTSERRYTIF PHSFQFQYHV BACU017941/1-492 MVGSTLWFSL LLAAAFAERA TALWPWPQYI QTSERRYTIF PHSFQFQYHV ENSTTRP00000002348/1-529 MAGSALWFSL LLAAAFAGRA TALWPWPQYI QTSEQSYTIF PHTFQFQYHV 51 100 ENSP00000268097/1-529 SSAAQPGCSV LDEAFQRYRD LLFGSGSWPR PYLTGKRHTL EKNVLVVSVV ENSBTAP00000017261/1-529 SSAAQVGCSV LDEAFQRYRD LLFGSVAFRF PHPIEKRHTS EKNSLVVLVV bmy_10986T0/1-506 SSAAQVGCSV LDEAFQRYRD LLFGSVSFHF PQPMVNPKK- ---------- BACU017941/1-492 SSAAQVGCSV LDEAFQRYRD LLFGSVSFHF PQPMGKRHTS EKNSLVILVI ENSTTRP00000002348/1-529 SSAAQVGCSV LDEAFQRYRD LLFGSVSFHF PQPMGKWHMS EKNSLVILVV 101 150 ENSP00000268097/1-529 TPGCNQLPTL ESVENYTLTI NDDQCLLLSE TVWGAL--RG LETFSQLVWK ENSBTAP00000017261/1-529 TPGCDQFPSL GSVENYTLTI NDEQSLLLSE TVWGAL--RG LETFSQLIWR bmy_10986T0/1-506 RAGFHESRGM RELRRWEQ-- ---------- --WSRMGPRS LETFSQLVCR BACU017941/1-492 TPGCDQFPSL ESVENYTLTV NDEQCFLLSE TVWGAL--RG LETFSQLVQR ENSTTRP00000002348/1-529 TPGCDQFPSL ESVENYTLTI NDEQCFLLSE TVWGAL--RX XXXXXXXXXX 151 200 ENSP00000268097/1-529 SAEGTFFINK TEIEDFPRFP HRGLLLDTSR HYLPLSSILD TLDVMAYNKL ENSBTAP00000017261/1-529 SPEGTFYVNK TDIEDFPRFP HRGLLLDTSR HYLPLASILD TLDVMAYNKF bmy_10986T0/1-506 SPEGTFYINK TEIEDFPRFP HRGLLLDTSR HYLPLASILN TLDVMAYNKF BACU017941/1-492 SPEGT----- ---------- ---------- ---------- --DVMAYNKF ENSTTRP00000002348/1-529 XXXXXFYINK TEIEDFPRFP HRGLLLDTSR HYLPLASILD TLDVMAYNKF 201 250 ENSP00000268097/1-529 NVFHWHLVDD PSFPYESFTF PELMRKGSYN PVTHIYTAQD VKEVIEYARL ENSBTAP00000017261/1-529 NVFHWHLVDD SSFPYESFTF PELTKKGSYN PATHIYTAQD VKEVIEYARL bmy_10986T0/1-506 NVFHWHLVDD SSFPYESFTF PDLTKKGSYN PATHIYTAQD VKEVIEYARL BACU017941/1-492 NVFHWHLVDD SSFPYESFTF PDLTKKGSYN PATHIYTAQD VKEVIEYARL ENSTTRP00000002348/1-529 NVFHWHLVDD PSFPYESFTF PNLTKKGSYN PATHIYTAQD VKEVIEYARL 251 300 ENSP00000268097/1-529 RGIRVLAEFD TPGHTLSWGP GIPGLLTPCY SGSEPSGTFG PVNPSLNNTY ENSBTAP00000017261/1-529 RGIRVLAEFD TPGHTLSWGP GVPGLLTPCY SGSHPSGTFG PVNPALNNTY bmy_10986T0/1-506 RGIRVLAEFD TPGHTLSWGP GVPGLLTPCY SGSHPSGTFG PVNPALNNTY BACU017941/1-492 RGIRVLAEFD TPGHTLSWGP GVPGLLTPCY SGSHPSGTFG PVNPALNNTY ENSTTRP00000002348/1-529 RGIRVLAEFD TPGHTLSWGP GVPGLLTPCY SGSHPSGTFG PVNPALNNTY 301 350 ENSP00000268097/1-529 EFMSTFFLEV SSVFPDFYLH LGGDEVDFTC WKSNPEIQDF MRKKGFGEDF ENSBTAP00000017261/1-529 EFMSTFFLEI STVFPDFYLH LGGDEVDFTC WKSNPDIQAF MKKKGFGDDF bmy_10986T0/1-506 EFMSTFFLEI SSVFPDFYLH LGGDEVDFTC WKSNPDIQAF MKKKGFGEDF BACU017941/1-492 EFMSTFFLEI SSVFPDFYLH LGGDEVDFTC WKSNPDIQAF MKKKGFGEDF ENSTTRP00000002348/1-529 EFMSAFFLEI SSVFPDFYLH LGGDEVDFTC WKSNPDIQAF MKKKGFGDDF 351 400 ENSP00000268097/1-529 KQLESFYIQT LLDIVSSYGK GYVVWQEVFD NKVKIQPDTI IQVWREDIPV ENSBTAP00000017261/1-529 KKLESFYIQT LLDIVSAYGK GYVVWQEVFD NKVKVRPDTI IQVWREEIPV bmy_10986T0/1-506 KKLESFYIQT LLDIVSAYGK GYVVWQEVFD NKVKVQPDTV IQVWREEMPV BACU017941/1-492 KKLESFYIQT LLDIVSAYGK GYVVWQEVFD NKVKVQPDTV IQVWREEMPV ENSTTRP00000002348/1-529 KKLESFYIQT LLDIVSAYGK GYVVWQEVFD NKVKVQPDTV IQVWREKMPV 401 450 ENSP00000268097/1-529 NYMKELELVT KAGFRALLSA PWYLNRISYG PDWKDFYIVE PLAFEGTPEQ ENSBTAP00000017261/1-529 KYVKELALVT RAGFRALLSA PWYLNHITYG PDWKEIYLVE PLAFEGSPEQ bmy_10986T0/1-506 RYMKEMELVT SAGFRALLSA PWYLNHITYG PDWKKIYMVE PLAFEGGPEQ BACU017941/1-492 RYMKEMELVT SAGFRALLSA PWYLNHITYG PDWKKIYVVE PLAFEGSPEQ ENSTTRP00000002348/1-529 RYTKEMELVT SAGFRALLSA PWYLNHITYG PDWKNIYMVE PLAFEGSPEQ 451 500 ENSP00000268097/1-529 KALVIGGEAC MWGEYVDNTN LVPRLWPRAG AVAERLWSNK LTSDLTFAYE ENSBTAP00000017261/1-529 KALVIGGEAC MWGEYVDSTN LVPRLWPRAG AVAERLWSNK MVSNLDFAFK bmy_10986T0/1-506 RALVIGGEAC MWGEYVDSTN LVPRLWPRAG AVAERLWSNK MVTDLDFAYK BACU017941/1-492 KALVIGGEAC MWGEYVDSTN LVPRLWPRAG AVAERLWSNK TVTDLDFAYK ENSTTRP00000002348/1-529 KALVIGGEAC MWGEYVDSTN LVPRLWPRAG AVAERLWSNK MLTNLDFAYK 501 550 ENSP00000268097/1-529 RLSHFRCELL RRGVQAQPLN VGFCEQEFEQ T ENSBTAP00000017261/1-529 RLAHFRCELL RRGVQAQPLS VGYCDMEFEQ T bmy_10986T0/1-506 RLAHFRCELL RRGVQAQPLS VGYCDVEFEQ T BACU017941/1-492 RLAHFRCELL RRGVQAQPLS VGYCDVEFEQ T ENSTTRP00000002348/1-529 RLAHFRCELL RRGVQAQPLS VGYCDVEFEQ T