KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:56 2014 Check: 00 .. Name: ENSTTRP00000005520/1-1082 Len: 1270 Check: 6490 Weight: 1.00 Name: ENSP00000288078/1-1084 Len: 1270 Check: 6307 Weight: 1.00 Name: ENSBTAP00000017266/1-1079 Len: 1270 Check: 3183 Weight: 1.00 Name: bmy_14562T0/1-1173 Len: 1270 Check: 657 Weight: 1.00 Name: BACU018181/1-1079 Len: 1270 Check: 7168 Weight: 1.00 // 1 50 ENSTTRP00000005520/1-1082 MEQPKGVDWT VIILTCQYKD SVEVFQR--- ---------- --ELEIRQKR ENSP00000288078/1-1084 MEQPKGVDWT VIILTCQYKD SVQVFQR--- ---------- --ELEVRQKR ENSBTAP00000017266/1-1079 MEQPKGVDWT VIILTCQYKD SVEVFQR--- ---------- --ELEIRQKR bmy_14562T0/1-1173 MEQPKGVDWT VIILTCQYKD SVEVFQRGWR GWGAGPSHVL TTELEIRQKR BACU018181/1-1079 MEQPKGVDWT VIILTCQYKD SVEVFQR--- ---------- --ELEIRQKR 51 100 ENSTTRP00000005520/1-1082 EQIPTRTLLL AVEDPEVHVG SGGATLNALL VVAEHLSARA GFTWTCAGVS ENSP00000288078/1-1084 EQIPAGTLLL AVEDPEKRVG SGGATLNALL VAAEHLSARA GFT------- ENSBTAP00000017266/1-1079 EQIPAGTLLL AVEDPEVHVG SGGATLNALL VAAEHLSARA GFT------- bmy_14562T0/1-1173 EQIPTRTLLL AVEDPEVHVX SGGATLNALL VAAEHLSARA GFT------- BACU018181/1-1079 EQIPTRTMLL AVEDPEVHVG SGGATLNALL VAAEHLSARA GFT------- 101 150 ENSTTRP00000005520/1-1082 PCTRGHPPTS VNSALPLLVV TSDVLHSAWI LILHMGRDFP FDDCGRAFTC ENSP00000288078/1-1084 ---------- --------VV TSDVLHSAWI LILHMGRDFP FDDCGRAFTC ENSBTAP00000017266/1-1079 ---------- --------VV TSDVLHSAWI LILHMGRDFP FDDCGRAFTC bmy_14562T0/1-1173 ---------- --------VV TSDVLHSAWI LILHMGRDFP FDDCGRAFTC BACU018181/1-1079 ---------- --------VV TSDVLHSAWI LILHMGRDFP FDDCGRAFTC 151 200 ENSTTRP00000005520/1-1082 LPVENPQAPV EAVVCNLDCL LDIMSHRLGP GSPPGVWVCS TDMLLSVPPN ENSP00000288078/1-1084 LPVENPEAPV EALVCNLDCL LDIMTYRLGP GSPPGVWVCS TDMLLSVPAN ENSBTAP00000017266/1-1079 LPVENPQAPV EAVVCNLDCL LDIMSHRLGP GSPPGVWVCS TDMLLSVPPD bmy_14562T0/1-1173 LPVENPQAPV EAVVCNLDCL LDIMSHRLGP GSPPGVWVCS TDMLLSVPPN BACU018181/1-1079 LPVENPQAPV EAVVCNLDCL LDIMSHRLGP GSPPGVWVCS TDMLLSVPPN 201 250 ENSTTRP00000005520/1-1082 PGISWDGFRG ARVIALPGST AYARNHGVYL TDSQGFVLDI YYQGTEAEIQ ENSP00000288078/1-1084 PGISWDSFRG ARVIALPGSP AYAQNHGVYL TDPQGLVLDI YYQGTEAEIQ ENSBTAP00000017266/1-1079 PGISWDGFRG ARGIALPGSM AYARSHGVYL TDSEGFVLDI YYQGTEAEIQ bmy_14562T0/1-1173 PGISWDGFRG ARVIALPGST AYARNHGVYL TDSQ------ ---------- BACU018181/1-1079 PGISWDGFRG ARAIALPGST AYARNHGVYL TDSQGFVLDI YYQGTEAEIR 251 300 ENSTTRP00000005520/1-1082 RCARPDGRVP LVSGLVFFSV ETAEHLLATH VSPPLDACTY MGLDSGARPV ENSP00000288078/1-1084 RCVRPDGRVP LVSGVVFFSV ETAERLLATH VSPPLDACTY LGLDSGARPV ENSBTAP00000017266/1-1079 RCARPDGRVP LVSGVVFFSV ETAERLLATH VSPPLDACTY LGLDSGARPG bmy_14562T0/1-1173 ---------- -VSGLVFFSV ETAEHLLATH VSPPLDACTY MGLDSGARPV BACU018181/1-1079 RCGRPDGRVP LVSGLVFFSV ETAEHLLATH VSPPLDACTY MGLDSGARPV 301 350 ENSTTRP00000005520/1-1082 QLSLFFDILL CMARNVRRED FLVGQPPEMG QGDADIAGYR HGARAELWRE ENSP00000288078/1-1084 QLSLFFDILH CMAENVTRED FLVGRPPELG QGDADVAGYL QSARAQLWRE ENSBTAP00000017266/1-1079 QLSLFFDILL CMARNVQRED FLVGRPPEMG QGDADVAGYL HGARAELWRQ bmy_14562T0/1-1173 QVT------- ---------- ---------G TGD------- -------WQG BACU018181/1-1079 QLSLFFDILL CMARNVRRED FLVGRPPEMG QGDVDIAGYL HGARAELWRE 351 400 ENSTTRP00000005520/1-1082 LR-DQPLTVA YVPDGSYNYM TNSASEFLHS LTFPGAPGAQ VVHSQVE--- ENSP00000288078/1-1084 LR-DQPLTMA YVSSGSYSYM TSSASEFLLS LTLPGAPGAQ IVHSQVE--- ENSBTAP00000017266/1-1079 LR-GQPLTVA YVPDGSYSYM TNSASEFLHS LTSPGALGAQ VIHSQVE--- bmy_14562T0/1-1173 VGVSTCIFTA YVPDGSYNYM TNSASEFLHS LTFPGAPGAQ VVHSQVEVRP BACU018181/1-1079 LR-DQPLTVA YVPDGSYNYM TNSASEFLHS LTFPGAPGAQ VVHSQVE--- 401 450 ENSTTRP00000005520/1-1082 ---------- ---------- ---------- ---------- ---------- ENSP00000288078/1-1084 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017266/1-1079 ---------- ---------- ---------- ---------- ---------- bmy_14562T0/1-1173 AWRFALEEKA GRACPWGSSR NQDGMGVSLR LGPGRYREGA GWPTGVGSSR BACU018181/1-1079 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000005520/1-1082 ---------- ---------- ------ERQL LGAGSSVVSC LLEGPVQLGP ENSP00000288078/1-1084 ---------- ---------- ------EQQL LAAGSSVVSC LLEGPVQLGP ENSBTAP00000017266/1-1079 ---------- ---------- ------EWLL LEAGSAVVSC LLEGPVRLGP bmy_14562T0/1-1173 NSGPGCGGEF GQPPPRALTA FSLASQERQL LGAGSSVVSC LLEGPVQLGP BACU018181/1-1079 ---------- ---------- ------ERQL LGAGSSVASC LLEGPVQLGP 501 550 ENSTTRP00000005520/1-1082 GSVLQHCHLR --------GP IHIGTGCFVS GLDVAQSEAL HGLELHDLVL ENSP00000288078/1-1084 GSVLQHCHLQ --------GP IHIGAGCLVT GLDTAHSKAL HGRELRDLVL ENSBTAP00000017266/1-1079 GSVLQHCHLR --------GP IHVGTGCFVS GLDVAQSQAL HGVELRDLVL bmy_14562T0/1-1173 GSVLQHCHLR DACPLPCQGP IHISTGCFVS GLDVAQSEAL HGLELHDLVL BACU018181/1-1079 GSVLQHCHLR --------GP IHIGTGCFVS GLDVAQSEAL HGLELHDLVL 551 600 ENSTTRP00000005520/1-1082 QGHHVQLHGA RSRAFTLVGR LDSWERQGTG TYLNMSWSQF FQKTGIRDWD ENSP00000288078/1-1084 QGHHTRLHGS PGHAFTLVGR LDSWERQGAG TYLNVPWSEF FKRTGVRAWD ENSBTAP00000017266/1-1079 RGHHVQLHGA PSRAFTLVGR LDSWERQGTG TYLNMSWSKF FQKTGIRDWD bmy_14562T0/1-1173 QGHHVQLHGA HSRAFTLVGR LDSWEKQGTG TYLNMSWSQF FQKTGIRDWD BACU018181/1-1079 QGHHVQLHGA RSRAFTLVGR LDSWEREGTG TYLNMSWSQF FQKTGIRDWD 601 650 ENSTTRP00000005520/1-1082 LWDPDMPRIE RCLLNARLFP VLHPSRALGP QDMLWMLDPQ EAGSKALRAW ENSP00000288078/1-1084 LWDPETLPAE YCLPSARLFP VLHPSRELGP QDLLWMLDHQ EDGGEALRAW ENSBTAP00000017266/1-1079 LWDPDVPPTE RCLLSARLFP VLHPSRAPGP RDLLWMLDPQ EDGGRALRAW bmy_14562T0/1-1173 LWDPDMPPIE RCLLSARLFP VLHPSRALGP QDMLWMLDPQ EDGGKALRAW BACU018181/1-1079 LWDPDMPPIE RCLLSARLFP VLHPSRALGP QDMLWMLGPQ EDGGKALRAW 651 700 ENSTTRP00000005520/1-1082 RASWRLSWEQ LQPCLDRAAT LASRRHLFFR QALHKARHVL EARQDLSLRP ENSP00000288078/1-1084 RASWRLSWEQ LQPCLDRAAT LASRRDLFFR QALHKARHVL EARQDLSLRP ENSBTAP00000017266/1-1079 RACWRLSWEQ LQPCLDRGAT LAARRDLFFR QALHKARHVL EARQDLSLRP bmy_14562T0/1-1173 RASWRLSWEQ LQPRLDRAAT LASRRHLFFR QALHKARHVL EARQDLSLRP BACU018181/1-1079 RASWRLSWEQ LQPRLDRAAT LASRRHLFFR QALHKARHVL EARQDLSLRP 701 750 ENSTTRP00000005520/1-1082 LIQAAVREGC PGPLMATLDQ VAAGVGDPGV AARALACVAD VLGCMAEGQG ENSP00000288078/1-1084 LIWAAVREGC PGPLLATLDQ VAAGAGDPGV AARALACVAD VLGCMAEGRG ENSBTAP00000017266/1-1079 LTWAAVHEGC PGPLLATLDQ VAAGAEDPGV AARALACVAD VLGCMAEGRG bmy_14562T0/1-1173 LIRAAVREGC PGPLMATLDQ VAAGGGDPGV AARALACVAD VLGCMAEGQG BACU018181/1-1079 LIRAAVYEGC PGPLMATLDQ VAAGGGDPGV AARALACVAD VLGCMAEGQG 751 800 ENSTTRP00000005520/1-1082 GLRSGPAANP EWVRPFSYLE CGDLARGVAA LAEERDKWLS ---------- ENSP00000288078/1-1084 GLRSGPAANP EWMRPFSYLE CGDLAAGVEA LAQERDKWLS ---------- ENSBTAP00000017266/1-1079 GLRSGPAANP EWVSPFSFLE RGDLARGVEG LTRERARWLS ---------- bmy_14562T0/1-1173 GLRSGPAANP EWVRPFSYLE CGDLARGVEA LAEERDKWLS RWVLMMSKPL BACU018181/1-1079 GLRSGPAANP EWVRPFSYLE CGDLARGVEA LAEERDKWLS ---------- 801 850 ENSTTRP00000005520/1-1082 ---------- ---------- ---------- ---------- --------XX ENSP00000288078/1-1084 ---------- ---------- ---------- ---------- --------RP ENSBTAP00000017266/1-1079 ---------- ---------- ---------- ---------- --------RP bmy_14562T0/1-1173 EKPPAVLGGG NPERGGVSSG HLGQSVPKPK QPAPSLGLHA TISPFPPGRP BACU018181/1-1079 ---------- ---------- ---------- ---------- --------RP 851 900 ENSTTRP00000005520/1-1082 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000288078/1-1084 ALLVRAARHY EGAGQILIRQ AVMSAQHFVS TEQVELPGPG QWVVAECPAR ENSBTAP00000017266/1-1079 ALLVRAARHY EGAGQLLIRR AVMSAQRFVC CMPVELPAPG QWVVAECPAR bmy_14562T0/1-1173 ALLVRAARHY EGAGQILIRQ AVMSAQHFVS SVPVELPAPG QWVVAECPAR BACU018181/1-1079 ALLVRAARHY EGAGQILIRQ AVMSAQHFVS SVPVELPAPG QWVVAECPAR 901 950 ENSTTRP00000005520/1-1082 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000288078/1-1084 VDFSGGWSDT PPLAYELGGA VLGLAVRVDG RRPIGARARR IPEPELWLAV ENSBTAP00000017266/1-1079 VDFSGGWSDT PPLAYELGGA VLGLAVRVDS RRPIGARARR IPEPELRLAV bmy_14562T0/1-1173 VDFSGGWSDT PPLAYELGGA VLGLAVRLNG RRPIGARARR IPEPELWLAV BACU018181/1-1079 VDFSGGWSDT PPLAYELGGA VLGLAVRLNG RRPIGARARR IPEPELWLAV 951 1000 ENSTTRP00000005520/1-1082 XXXXXXXXXX XXXXXXXXXX XXXXXXXPGA LLKAAFICAG IVSVHSKLSL ENSP00000288078/1-1084 GPRQDEMTVK IVCRCLADLR DYCQPHAPGA LLKAAFICAG IVHVHSELQL ENSBTAP00000017266/1-1079 GPRQDQMAVK IVCCNLDDMR GYCQPQAPGA LLKAAFVCAG IVSVSSELSL bmy_14562T0/1-1173 GPQQDKMATK IVCGSLDDLQ DYCQPHAPGA LLKAAFICAG IVSVHSKLSL BACU018181/1-1079 GPRQDKMATK IVCGSLDDLQ DYCQPHAPGA LLKAAFICAG IVSVHSKLSL 1001 1050 ENSTTRP00000005520/1-1082 S--------- ---------- -------TSS ILAGAALAAL QRAAGRAVGT ENSP00000288078/1-1084 SEQLLRTFGG GFELHTWSEL PHGSGLGTSS ILAGTALAAL QRAAGRVVGT ENSBTAP00000017266/1-1079 REQLLRAFGG GFELHTWSEL PHGSGLGTSS ILAGAALAAV QRAAGRVVGA bmy_14562T0/1-1173 SEQLLCTFGG GFELHTWSEL PHGSGLGTSS ILAGAALAAL QRAAGRAVGT BACU018181/1-1079 SEQLLCAFGG GFELHTWSEL PHGSGLGTSS ILAGAALAAL QRAAGRAVGT 1051 1100 ENSTTRP00000005520/1-1082 EALIHAVLHL EQVLTTGGGW QDQVGGLMPG IKVGRSRPQL PLKVEVEEIT ENSP00000288078/1-1084 EALIHAVLHL EQVLTTGGGW QDQVGGLMPG IKVGRSRAQL PLKVEVEEVT ENSBTAP00000017266/1-1079 EALIHAVLHL EQVLTTGGGW QDQVGGLMPG IKVGRSQAQL PLKVEVEEVA bmy_14562T0/1-1173 EALIHAVLHL EQLLTTGGGW QDQVGGLMPG IKVGRSRAQL PLKVEVEEIT BACU018181/1-1079 EALIHAVLHL EQLLTTGGGW QDQVGGLMPG IKVGRSRAQL PLKVEVEEIT 1101 1150 ENSTTRP00000005520/1-1082 VPAGFVQKLN DHLLLVYTGK TRLARNLLQD VLRSWYARLP AVVQNAHNLV ENSP00000288078/1-1084 VPEGFVQKLN DHLLLVYTGK TRLARNLLQD VLRSWYARLP AVVQNAHSLV ENSBTAP00000017266/1-1079 VPEGFVQKLN DHLLLVYTGK TRLARNLLQD VLRSWYARLP AVVQNARRLV bmy_14562T0/1-1173 VPVGFVQKLN DHLLLVYTGK TRLARNLLQD VLRSWYARLP AVVENAHKLV BACU018181/1-1079 VPAGFVQKLN DHLLLVYTGK TRLARNLLQD VLRSWYARLP AVVQNAHNLV 1151 1200 ENSTTRP00000005520/1-1082 RHTEECAEAF RQGSLPLLGQ CLTSYWEQKK LMAPGCEPLA VRRMMDVLAP ENSP00000288078/1-1084 RQTEECAEGF RQGSLPLLGQ CLTSYWEQKK LMAPGCEPLT VRRMMDVLAP ENSBTAP00000017266/1-1079 QQTEECAEAF RQGSLPLLGQ CLTSYWEQKK LMAPGCEPLV VRLLMDVLAP bmy_14562T0/1-1173 RHTEECAEAF RQGSLPLLGQ CLTSYWEQKK LMAPGCEPLA VRRMMAVLAP BACU018181/1-1079 RHTEECAEAF RQGSLPLLGQ CLTSYWEQKK LMAPGCEPLA VRRMMAVLAP 1201 1250 ENSTTRP00000005520/1-1082 HVHGQSLAGA GGGGFLYLLT KEPRQKEALE AVLAKTEGLG NYSIHLVEVD ENSP00000288078/1-1084 HVHGQSLAGA GGGGFLYLLT KEPQQKEALE AVLAKTEGLG NYSIHLVEVD ENSBTAP00000017266/1-1079 YVHGQSLAGA GGGGFLCLLT KEPRQKEALE AVLAKTKGLG NYSIHLVEVD bmy_14562T0/1-1173 HVHGQSLAGA GGGGFLYLLT KEPRQKEALE AVLAKTEGLG NYSIHLVEVD BACU018181/1-1079 HVHGQSLAGA GGGGFLYLLT KEPRQKEALE AVLAKTEGLG NYSIHLVEVD 1251 1300 ENSTTRP00000005520/1-1082 TQGLSLQLLG TETSA-CPFS ENSP00000288078/1-1084 TQGLSLKLLG TEASTCCPFP ENSBTAP00000017266/1-1079 TQGLSLQLLG TETST----- bmy_14562T0/1-1173 TQGLSLQLLG TETSA----- BACU018181/1-1079 TQGLSLQLLG TETSA-----