KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:58 2014 Check: 00 .. Name: ENSTTRP00000000592/1-1050 Len: 1712 Check: 6597 Weight: 1.00 Name: BACU009027/1-1663 Len: 1712 Check: 6502 Weight: 1.00 Name: ENSP00000324560/1-1050 Len: 1712 Check: 2534 Weight: 1.00 Name: bmy_20540T0/1-1100 Len: 1712 Check: 1805 Weight: 1.00 Name: ENSBTAP00000017268/1-1055 Len: 1712 Check: 6617 Weight: 1.00 // 1 50 ENSTTRP00000000592/1-1050 MESGRGGLET VGKFEFSRKD LIGHGAFAVV FKGRHREKHD LEVAVKCINK BACU009027/1-1663 ---------- --MREVKREE --DSHAPGSV LTRRPQTKHD LEVAVKCINK ENSP00000324560/1-1050 MEPGRGGTET VGKFEFSRKD LIGHGAFAVV FKGRHREKHD LEVAVKCINK bmy_20540T0/1-1100 MESGRGGLET VGKFEFSRKD LIGHGAFAVV FKGRHREKHD LEVAVKCINK ENSBTAP00000017268/1-1055 MEPGRGGLEA VGKFEFSRKD LIGHGAFAVV FKGRHREKHD LEVAVKCINK 51 100 ENSTTRP00000000592/1-1050 KNLAKSQTLL GKEIKILKEL KHENIVALYD FQEMANSVYL VMEYCNGGDL BACU009027/1-1663 KNLAKSQTLL GKEIKILKEL KHENIVALYD FQEMANSVYL VMEYCNGGDL ENSP00000324560/1-1050 KNLAKSQTLL GKEIKILKEL KHENIVALYD FQEMANSVYL VMEYCNGGDL bmy_20540T0/1-1100 KNLAKSQTLL GKEIKILKEL KHENIVALYD FQEMANSVYL VMEYCNGGDL ENSBTAP00000017268/1-1055 KNLAKSQTLL GKEIKILKEL KHENIVALYD FQEMANSVYL VMEYCNGGDL 101 150 ENSTTRP00000000592/1-1050 ADYLH----- ---------- ---------- ---------- TMRTLSEDTI BACU009027/1-1663 ADYLH----- ---------- ---------- ---------- AMRTLSEDTI ENSP00000324560/1-1050 ADYLH----- ---------- ---------- ---------- AMRTLSEDTI bmy_20540T0/1-1100 ADYLHRSRSP VGSSAGARPV PGPSGGRLST GGGPPQGPGA AMRTLSEDTI ENSBTAP00000017268/1-1055 ADYLH----- ---------- ---------- ---------- TMRTLSEDTI 151 200 ENSTTRP00000000592/1-1050 RLFLQQIAGA VRLLHSKGII -RDLKPQNFL LSNPVGRRAT PSNIRVKIAD BACU009027/1-1663 RLFLQQIAGA MRLLHSKGII HRDLKPQNLL LSNPGGRRAP PSNIRVKIAD ENSP00000324560/1-1050 RLFLQQIAGA MRLLHSKGII HRDLKPQNIL LSNPAGRRAN PNSIRVKIAD bmy_20540T0/1-1100 RLFLQQIAGA MRLLHSKGII HRDLKPQNLL LSNPGGRRAT PSNIRVKIAD ENSBTAP00000017268/1-1055 RLFLQQIAGA MRLLHSKGII HRDLKPQNIL LSNPGGRRAN PNNIRVKIAD 201 250 ENSTTRP00000000592/1-1050 FGFARYLQSN MMAATLCGSP MYMAPEVIMS QHYDGKADLW SIGTIVYQCL BACU009027/1-1663 FGFARYLQSN MMAATLCGSP MYMAPEVIMS QHYDGKADLW SIGTIVYQCL ENSP00000324560/1-1050 FGFARYLQSN MMAATLCGSP MYMAPEVIMS QHYDGKADLW SIGTIVYQCL bmy_20540T0/1-1100 FGFARYLQSN MMAATLCGSP MYMAPEVIMS QHYDGKADLW SIGTIVYQCL ENSBTAP00000017268/1-1055 FGFARYLQSN MMAATLCGSP MYMAPEVIMS QHYDGKADLW SIGTIVYQCL 251 300 ENSTTRP00000000592/1-1050 TGKAPFQASS PQDLRLFYEK NKTLVPPIPR ETSAPLRQLL LSLLQRNHRD BACU009027/1-1663 TGKAPFQASS PQDLRLFYEK NKTLVPPIPR ETSAPLRQLL LALLQRNHRD ENSP00000324560/1-1050 TGKAPFQASS PQDLRLFYEK NKTLVPTIPR ETSAPLRQLL LALLQRNHKD bmy_20540T0/1-1100 TGKAPFQASS PQDLRLFYEK NKTLVPPIPR ETSAPLRQLL LALLQRNHRD ENSBTAP00000017268/1-1055 TGKAPFQASS PQDLRLFYEK NKTLVPTIPR ETSAPLRQLL LALLQRNHKD 301 350 ENSTTRP00000000592/1-1050 RMDFEEYFHH PYLDSSDAMK KSPTEPVPSY PSSGSGSSSS SSSTSHLASP BACU009027/1-1663 RMDFDEFFHH PFLDASAAVK KSPPVPVPSY PSSGSGSSSS SSSTSHLASP ENSP00000324560/1-1050 RMDFDEFFHH PFLDASPSVR KSPPVPVPSY PSSGSGSSSS SSSTSHLASP bmy_20540T0/1-1100 RMDFDEFFHH PFLDASAAVK KSPPVPVPSY PSSGSGSSSS SSSTSHLASP ENSBTAP00000017268/1-1055 RMDFDEFFHH PFLDASATVK KSPPVPVPSY PSSGSGSSSS SSSTSHLASP 351 400 ENSTTRP00000000592/1-1050 PSLG------ ----EMQQQL QKTLTSPAEA AGFLQGSRDS GGSSKDSSCD BACU009027/1-1663 PALGPGLSGL PSDPQSLGEM QKTLTSPAEA AGFLQGSRDS GGSSKDSSCD ENSP00000324560/1-1050 PSLG------ -----EMQQL QKTLASPADT AGFLHSSRDS GG-SKDSSCD bmy_20540T0/1-1100 PALGPGLSGL LSDPQSLGEM QKTLTSPAEA AGFLQGSRDS GGSSKDSSCD ENSBTAP00000017268/1-1055 PSLG------ ----EMQQEL QKTLTSPAEA AGFLHGSRDS GGSSKDSSCD 401 450 ENSTTRP00000000592/1-1050 TDDFVMVPAQ FPXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU009027/1-1663 TDDFVMVPAQ FPGDLVAEAV GAKPPPDSLM CSGSSLAASA GLESRGRTPS ENSP00000324560/1-1050 TDDFVMVPAQ FPGDLVAEAP SAKPPPDSLM CSGSSLVASA GLESHGRTPS bmy_20540T0/1-1100 TDDFVMVPAQ FPGDLVAEAV GAKPPPDSLM CSGSSLAASA GLESRGRTPS ENSBTAP00000017268/1-1055 TDDFVMVPAQ FPGDLVAEAA GAKPPPDSLM CSGSSLAAST GLDSRGRTPS 451 500 ENSTTRP00000000592/1-1050 XXXXXXXXXX XXXRAGASSS SRCGASAPIP VPTQVHNYQR IEQSLQSPTQ BACU009027/1-1663 PSPPCSSSLS PSGRAGAFSS SRCGASVPIP VPTQVQNYQR IEQNLQSPTQ ENSP00000324560/1-1050 PSPPCSSSPS PSGRAGPFSS SRCGASVPIP VPTQVQNYQR IERNLQSPTQ bmy_20540T0/1-1100 PSPPCSSSLS PSGRAGAFSS SRCGASVPIP VPTQVHNYQR IEQSLQSPPQ ENSBTAP00000017268/1-1055 PSPPCGSSLS PSGRTGTFSS SRCGASVPIP VPTQVQNYQR IEQNLQSPTQ 501 550 ENSTTRP00000000592/1-1050 YQAARSSAIR RSGSTSPLGF ARASLSPPSH AEHGAALSRK FSLGGGRPYT BACU009027/1-1663 YRTARSSAIR RSGSTSPLGF ARASLSPPSH AEHGAALPRK LSLGGGRPYT ENSP00000324560/1-1050 FQTPRSSAIR RSGSTSPLGF ARASPSPPAH AEHGGVLARK MSLGGGRPYT bmy_20540T0/1-1100 YRTARSSAIR RSGSTSPLGF ARASLSPPSH AEHGAALPRK LSVGGGRPYT ENSBTAP00000017268/1-1055 YQTARSSAIR RSGSTSPLGF ARASPSPPSH AEHGAALARK LSLGGGRPYT 551 600 ENSTTRP00000000592/1-1050 PSPQVGTIPE RPGWSGVPSP QAAEMRGGRS PRPGSSAPEH SPHSAGLGCR BACU009027/1-1663 PSPQVGTIPE RPGWSGAPSP QAAEMRGGRS PRPGSSAPEH SPHSAGLGCR ENSP00000324560/1-1050 PSPQVGTIPE RPGWSGTPSP QGAEMRGGRS PRPGSSAPEH SPRTSGLGCR bmy_20540T0/1-1100 PSPQVGTIPE RPGWSGAPSP QAAEMRGGRS PRPGSSAPEH SPHSAGLGCR ENSBTAP00000017268/1-1055 PSPQVGTIPE RPGWSGAPSP QASEMRGGRS PRPGSSAPEH SPHTSGLGYR 601 650 ENSTTRP00000000592/1-1050 LHSAPNLSDL RVVRPKLPKP PTDPLGVAFG HPQASPPQPS HGLQSCRPLR BACU009027/1-1663 LHSAPNLSDL RVVRPKLPKP PTDPLGVAFG HPQASPPQPS HGLQSCRPLR ENSP00000324560/1-1050 LHSAPNLSDL HVVRPKLPKP PTDPLGAVFS PPQASPPQPS HGLQSCRNLR bmy_20540T0/1-1100 LHSAPNLSDL RVVRPKLPKP PTDPLGVAFG HPQASPPQPS HGLQSCRPLR ENSBTAP00000017268/1-1055 LHSAPNLSDL HVVRPKLPKP PTDPLGVAFG HPQASPPQPS HGLQSCRPLR 651 700 ENSTTRP00000000592/1-1050 GSPKLPDFLQ RNPLPPILGS PTKAVPAFDF TKTPSSQNLL TLLARQGVVM BACU009027/1-1663 GSPKLPDFLQ RNPLPPILGS PTKAVPAFDF TKTPSSQNLL TLLARQGVVM ENSP00000324560/1-1050 GSPKLPDFLQ RNPLPPILGS PTKAVPSFDF PKTPSSQNLL ALLARQGVVM bmy_20540T0/1-1100 GSPKLPDFLQ RNPLPPILGS PTKAVPAFDF TKTPSSQNLL TLLARQGVVM ENSBTAP00000017268/1-1055 GSPKLPDFLQ RNPLPPILGS PTKTVPVFEF TKTPSSQNLL TLLARQGVVM 701 750 ENSTTRP00000000592/1-1050 TPPRNRTLPD LSEAGPFQGQ QLGPGLRPTE DAKGSFGRSL SAGRLTDLLL BACU009027/1-1663 TPPRNRTLPD LSEAGPFQGQ QLGPGLRPTE DAKGPFGRSL SAGRLTDLLL ENSP00000324560/1-1050 TPPRNRTLPD LSEVGPFHGQ PLGPGLRPGE DPKGPFGRSF STSRLTDLLL bmy_20540T0/1-1100 TPPRNRTLPD LSEAGPFQGQ QLGPGLRPTE DAKGPFGRSL SAGRLTDLLL ENSBTAP00000017268/1-1055 TPPRNRTLPD LSEAGPFQGQ QLGPGLRPTE DTKGAFGRSL STGRLTDLLL 751 800 ENSTTRP00000000592/1-1050 -AAFGTHAPD SRSVHSLHEK PMETXXXXXX XXXXXXXXXX XXXXXXXXXX BACU009027/1-1663 KAAFGTQAPD SGSVDSLQEK PMETAPSAGF GGNLHPGARA GAASSPSPVV ENSP00000324560/1-1050 KAAFGTQAPD PGSTESLQEK PMEIAPSAGF GGSLHPGARA GGTSSPSPVV bmy_20540T0/1-1100 KAAFGTQAPD SGSVDSLQEK PMETAPCAGF GGNLHPGARA GGASSPSPVV ENSBTAP00000017268/1-1055 KAAFGTQAPD SGSTDSLQEK PMEIAPSAGF GGNLHPGARA GGASSPSPVV 801 850 ENSTTRP00000000592/1-1050 XXXXXXXXXX XXXXXXXXXX XX-------- ---------- ---------- BACU009027/1-1663 FTVGSPPSGT TPPQGPRATV FSGEARXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000324560/1-1050 FTVGSPPSGS TPPQGPRTRM FSAGPT---- ---------- ---------- bmy_20540T0/1-1100 FTVGSPPSGT TPPQGPRATV FSVGSS---- ---------- ---------- ENSBTAP00000017268/1-1055 FTVGSPPSGT TPPQGPRTTM FSVGSS---- ---------- ---------- 851 900 ENSTTRP00000000592/1-1050 ---------- ---------- ---------- ---------- ---------- BACU009027/1-1663 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000324560/1-1050 ---------- ---------- ---------- ---------- ---------- bmy_20540T0/1-1100 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017268/1-1055 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000000592/1-1050 ---------- ---------- ---------- ---------- ---------- BACU009027/1-1663 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000324560/1-1050 ---------- ---------- ---------- ---------- ---------- bmy_20540T0/1-1100 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017268/1-1055 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000000592/1-1050 ---------- ---------- ---------- ---------- ---------- BACU009027/1-1663 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000324560/1-1050 ---------- ---------- ---------- ---------- ---------- bmy_20540T0/1-1100 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017268/1-1055 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000000592/1-1050 ---------- ---------- ---------- ---------- ---------- BACU009027/1-1663 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000324560/1-1050 ---------- ---------- ---------- ---------- ---------- bmy_20540T0/1-1100 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017268/1-1055 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSTTRP00000000592/1-1050 -------XXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU009027/1-1663 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000324560/1-1050 -------GS- ---ASSSARH LVPGPCSEAP APELPAPGHG CSFADPITAN bmy_20540T0/1-1100 -------SPI SSAGSSSARH LAPGAYGEAP L-EVPAPGHC CSFADPVAAN ENSBTAP00000017268/1-1055 -------SSL SSAGSSSARH LAPGAYSEAT L-EVPAPGHC CSFADPVTAN 1101 1150 ENSTTRP00000000592/1-1050 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU009027/1-1663 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000324560/1-1050 LEGAVTFEAP DLPEETLMEQ EHTEILRGLR FTLLFVQHVL EIAALKGSAS bmy_20540T0/1-1100 LEGAVTFEAP DLPEETLMEQ EHTEILHSLR FTLVFVQHVL EIAALKGSAS ENSBTAP00000017268/1-1055 LEGAVTFEAP DLPEETLMEQ EHTEILHSLR FTLVFVQHIL EIAALKGSAS 1151 1200 ENSTTRP00000000592/1-1050 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU009027/1-1663 EAAGGPEFQR QESVVADQIS LLSREWGFAE QLVLYLKAAE LLSSGLQTAI ENSP00000324560/1-1050 EAAGGPEYQL QESVVADQIS LLSREWGFAE QLVLYLKVAE LLSSGLQSAI bmy_20540T0/1-1100 EAAGGPEYQL QESVVADQIS LLSREWGFAE QLVLYLKAAE LLSSGLQTAI ENSBTAP00000017268/1-1055 EAAGGPEDQL QESVVADQIS LLSREWGFAE QLVLYLKVAE LLSSGLQTAI 1201 1250 ENSTTRP00000000592/1-1050 XXXXXXXXXX XXXXXXXVRK LNELYKTSVV SCQGLSLRLQ RFFLDKQRLL BACU009027/1-1663 DQIRAGKLCL SSTVKQVVRK LNELYKTSVV SCQGLSLRLQ RFFLDKQRLL ENSP00000324560/1-1050 DQIRAGKLCL SSTVKQVVRR LNELYKASVV SCQGLSLRLQ RFFLDKQRLL bmy_20540T0/1-1100 DQTRAGKLCL SSTVKQVVRK LNELYKTSVV SCQGLSLRLQ RFFLDKQRLL ENSBTAP00000017268/1-1055 DQIRAGKLCL SSTVKQVVRK LNELYKTSVV SCQSLSLRLQ RFFLDKQRLL 1251 1300 ENSTTRP00000000592/1-1050 DRIQSVAAEK LIFSHAVQTV QSAALDEMFH RREDCVQRYH KALLLMEGLQ BACU009027/1-1663 DRVQSVSAEK LIFSHAVQTV QSAALDEMFH RREDCVQRYH KALLLMEGLQ ENSP00000324560/1-1050 DRIHSITAER LIFSHAVQMV QSAALDEMFQ HREGCVPRYH KALLLLEGLQ bmy_20540T0/1-1100 DRIQSVSAEK LIFSHAVQTV QSAALDEMFH RREDCVQRYH KALLLMEGLQ ENSBTAP00000017268/1-1055 DRIQSVTAEK LIFSHAVQTV QSAALDEMFH RREDCVQRYH KALLLMEGLQ 1301 1350 ENSTTRP00000000592/1-1050 HILSDQADVE NIA------- ---------- ---------- ---------- BACU009027/1-1663 QILSDQADVE NIAKWNGEAP VPVGTQQEQD RKGRRGWQGT ARIWEETEQQ ENSP00000324560/1-1050 HMLSDQADIE NVT------- ---------- ---------- ---------- bmy_20540T0/1-1100 QILSDQADVE NIA------- ---------- ---------- ---------- ENSBTAP00000017268/1-1055 QILTDQADVE NIA------- ---------- ---------- ---------- 1351 1400 ENSTTRP00000000592/1-1050 ---------- ---------- ---------- ---------- ---------- BACU009027/1-1663 AKKLKSSEDG EQHRKLPKRK VVLLVAYSGK GYHGMQRNVG SSKFKTIEDD ENSP00000324560/1-1050 ---------- ---------- ---------- ---------- ---------- bmy_20540T0/1-1100 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017268/1-1055 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSTTRP00000000592/1-1050 ---------- ---------- ---------- ---------- ---------- BACU009027/1-1663 LVSALVRSGC IPENHGEDMR KMSFQRCART DKGVSAAGQV VSLKVWLIDD ENSP00000324560/1-1050 ---------- ---------- ---------- ---------- ---------- bmy_20540T0/1-1100 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017268/1-1055 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSTTRP00000000592/1-1050 ---------- ---------- ---------K CK-------- ---------- BACU009027/1-1663 LLEKINSHLP SHIRILGLKR VTGGFNSKNK CDARTYFYML PTFAFAHKDR ENSP00000324560/1-1050 ---------- ---------- ---------K CK-------- ---------- bmy_20540T0/1-1100 ---------- ---------- ---------K CK-------- ---------- ENSBTAP00000017268/1-1055 ---------- ---------- ---------K CK-------- ---------- 1501 1550 ENSTTRP00000000592/1-1050 ---------- ---------- ---------- ---------- ---------- BACU009027/1-1663 DAQDETYRLQ AETLGRVNRL LACYRGTHNF HNFTSQKGPR EPSARRYILD ENSP00000324560/1-1050 ---------- ---------- ---------- ---------- ---------- bmy_20540T0/1-1100 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017268/1-1055 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSTTRP00000000592/1-1050 -LCIE----- ---------- ---------R RLSALLTGIC A--------- BACU009027/1-1663 MFCEEPFVRE GMEFAVIKVK GQSFLRHQIR KMVGLVVAIV KGYAPESVLE ENSP00000324560/1-1050 -LCIE----- ---------- ---------R RLSALLTGIC A--------- bmy_20540T0/1-1100 -LCIE----- ---------- ---------R RLSALLTGIC A--------- ENSBTAP00000017268/1-1055 -LCIE----- ---------- ---------R RLSALLTGIC A--------- 1601 1650 ENSTTRP00000000592/1-1050 ---------- ---------- ---------- ---------- ---------- BACU009027/1-1663 RCWGEAKVDV PKAPGLGLVL ERVHFEKYNQ RFGHDGLHEP LDWAREEAEV ENSP00000324560/1-1050 ---------- ---------- ---------- ---------- ---------- bmy_20540T0/1-1100 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017268/1-1055 ---------- ---------- ---------- ---------- ---------- 1651 1700 ENSTTRP00000000592/1-1050 ---------- ---------- ---------- ---------- ---------- BACU009027/1-1663 AAFKEQHIYP TIISTERHER SMAQWLSTLP VHDFSATAHA AASPGTKVPR ENSP00000324560/1-1050 ---------- ---------- ---------- ---------- ---------- bmy_20540T0/1-1100 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017268/1-1055 ---------- ---------- ---------- ---------- ---------- 1701 1750 ENSTTRP00000000592/1-1050 ---------- -- BACU009027/1-1663 TLEGSDGDGG SD ENSP00000324560/1-1050 ---------- -- bmy_20540T0/1-1100 ---------- -- ENSBTAP00000017268/1-1055 ---------- --