KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:01 2014 Check: 00 .. Name: ENSP00000363001/1-455 Len: 465 Check: 9792 Weight: 1.00 Name: ENSTTRP00000007103/1-455 Len: 465 Check: 368 Weight: 1.00 Name: ENSBTAP00000017279/1-456 Len: 465 Check: 2591 Weight: 1.00 Name: bmy_18069T0/1-444 Len: 465 Check: 9321 Weight: 1.00 Name: BACU003255/1-456 Len: 465 Check: 762 Weight: 1.00 // 1 50 ENSP00000363001/1-455 -----MRLLA WLIFLANWGG ARAE----PG KFWHIADLHL DPDYKVSKDP ENSTTRP00000007103/1-455 -----MRLPE LLIFLAHWGV TKAG----QG KFWHVSDLHL DPDYKVSEDP ENSBTAP00000017279/1-456 -----MRLPE VLIFLASWGV ARAV----PG KFWHISDLHL DPDYKVSEDP bmy_18069T0/1-444 MVETQGSLDS LHIQAQGETC IEQGLLAPAG KFWHVSDLHL DLDYKVSEDP BACU003255/1-456 -----MRLPE LLIFLAHWGI TRAG----QG KFWHVSDLHL DRDYKVSEDP 51 100 ENSP00000363001/1-455 FQVCPSAGSQ PVPDAGPWGD YLCDSPWALI NSSIYAMKEI EPEPDFILWT ENSTTRP00000007103/1-455 LQVCPSAGSQ PVPNAGPWGN YLCDSPWILI HSSIYTMKEI EPQPDFILWT ENSBTAP00000017279/1-456 LQVCPSAGSQ PVPNAGPWGD YLCDSPWILI NSSIYAMKEI EPEPDFILWT bmy_18069T0/1-444 LQVCPSAGSQ PVPNAGPWGN YLCDSPWILI NSSIYAMKEI EPEPDFIFWT BACU003255/1-456 LQVCPSAGSQ PVPNAGPWGN YLCDSPWILI NSSIYAMKEI EPEPDFIFWT 101 150 ENSP00000363001/1-455 GDDTPHVPDE KLGEAAVLEI VERLTKLIRE VFPDTKVYAA LGNHDFHPKN ENSTTRP00000007103/1-455 GDDTPHVPNE NLGEEAVLQI VENLTKLIRE AFPDTKVYAA LGNHDFHPKN ENSBTAP00000017279/1-456 GDDTPHVPNE RLSEAAVLQI VKQLTQLIRE AFPDTKVYAA LGNHDFHPKN bmy_18069T0/1-444 GDDTPHVPNE NLGEAAVLQI VENLTELIRK AFPDTKVYAA LGNHDFHPKN BACU003255/1-456 GDDTPHVPNE NLGEAAVLQI VENLTELIRK AFPDTKVYAA LGNHDFHPKN 151 200 ENSP00000363001/1-455 QFPAGSNNIY NQIAELWKPW LSNESIALFK KGAFYCEKLP GPSGAGRIVV ENSTTRP00000007103/1-455 QFPAGSNNIY NRVAELWRPW LSYESFALFK EGAFYSEKLP GPSAAGRIVV ENSBTAP00000017279/1-456 QLPAGSNNIY NQVAELWRPW LRNESVTLFK EGAFYSEKLP GLSGAGRIVV bmy_18069T0/1-444 QFPAGSNNIY NQVAELWRPW LS-------- --AFYSEKLP GPSAAGRIVV BACU003255/1-456 QFPAGSNNIY NQVAELWRPW LSNESIALFR EGAFYSEKLP GPSAAGRIVV 201 250 ENSP00000363001/1-455 LNTNLYYTSN ALTADMADPG QQFQWLEDVL TDASKAGDMV YIVGHVPPGF ENSTTRP00000007103/1-455 LNTNLYYSNN EQTAGMADPG QQFQWLDDVL TNASRAGEMV YIIGHVPXXX ENSBTAP00000017279/1-456 LNTNLYYTSN EQTAGMADPS QQFQWLDDVL TNASLAGEMV YIIGHVPPGF bmy_18069T0/1-444 LNTNLYYSNN QQTAGMADPG QQFQWLDDVL TNASRAGEMV YIIGHVPPGF BACU003255/1-456 LNTNLYYSNN EQTAGMADPG QQFQWLDDVL TNASRAGEMV YIIGHVPPGF 251 300 ENSP00000363001/1-455 FEKTQNKAWF REGFNEKYLK VVRKHHRVIA GQFFGHHHTD SFRMLYDDAG ENSTTRP00000007103/1-455 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000017279/1-456 FEKTRNKAWF REGFNEEYLK VVQRHHRVIA GQFFGHHHTD SFRMFYDGAG bmy_18069T0/1-444 FEKTRNKAWF REGPNQEYLK VVRKHHRVIA GQFFGHHHTD SFRMFYDDAG BACU003255/1-456 FEKTRNKAWF REGPNQEYLK VVRKHHRVIA GQFFGHHHTD SFRMFYDDAG 301 350 ENSP00000363001/1-455 VPISAMFITP GVTPWKTTLP GVVNGANNPA IRVFEYDRAT LSLKDMVTYF ENSTTRP00000007103/1-455 VPISVMF-TP GVTPWKTTLP GVANGANNPA IRLFEYDRDT LSLQDMETYF ENSBTAP00000017279/1-456 TPISVMFLTP GVTPWKTTLP GVVNGANNPG IRVFEYDRAT LSLQDMVTYF bmy_18069T0/1-444 TPISVMFLTP GVTPWKTTLP GVVNGANNPG IRVFEYDRAT LSL------- BACU003255/1-456 TPISVMFLTP GVTPWKTTLP GVVNGANNPG IRVFEYDRAT LSLQDMVTYF 351 400 ENSP00000363001/1-455 MNLSQANAQG TPRWELEYQL TEAYGVPDAS AHSMHTVLDR IAGDQSTLQR ENSTTRP00000007103/1-455 LNLSQANALG APRWKLEYRV TRAYGVPDAG ARSMHAALGR IASDQDALQR ENSBTAP00000017279/1-456 LNLSQVNALG APRWELEYRV TEAYGVPDAG ARSMHAALGR IASDQGALQR bmy_18069T0/1-444 ----QANAQG APRWELEYRV TKAYGVPDAG ARSMHEALGR IASDQGALQR BACU003255/1-456 LNLSQANAQG EPRWELEYRV TKAYGVPDAG ARSMHEALGR IASDQGALQR 401 450 ENSP00000363001/1-455 YYVYNSVSYS AGVCDEACSM QHVCAMRQVD IDAYTTCLYA SGTTPVPQLP ENSTTRP00000007103/1-455 YYVYNSVSYD TLACDEACQT EHVCALREVA FDGYAACLRA PGVAPAPRLA ENSBTAP00000017279/1-456 YYVYNSVSYD TRACDEACRA EHVCALREVA FDGYAVCLRA PGVAPAPRLA bmy_18069T0/1-444 YYVYNSVSYD TRACDEACQA EHVCALREVA FDGYAACLRA PGVAPAPRLA BACU003255/1-456 YYVYNSVSYD TRACDEACQA EHVCALREVA FDGYAACLRA PGPAPAPRLA 451 500 ENSP00000363001/1-455 LLLMALLGLC TLVL- ENSTTRP00000007103/1-455 LLLLALLGLR TLLVP ENSBTAP00000017279/1-456 LLPAALLGLR ALLVS bmy_18069T0/1-444 LLLVALLGLR TLLVS BACU003255/1-456 LLLVALLGLR TLLVQ