KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:02 2014 Check: 00 .. Name: BACU006634/1-1056 Len: 1142 Check: 4047 Weight: 1.00 Name: ENSP00000380460/1-795 Len: 1142 Check: 2517 Weight: 1.00 Name: ENSBTAP00000017298/1-796 Len: 1142 Check: 229 Weight: 1.00 Name: bmy_10152T0/1-778 Len: 1142 Check: 5866 Weight: 1.00 Name: ENSTTRP00000005058/1-794 Len: 1142 Check: 8945 Weight: 1.00 // 1 50 BACU006634/1-1056 ---------- ---------- ---------- ---------- ---------- ENSP00000380460/1-795 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017298/1-796 ---------- ---------- ---------- ---------- ---------- bmy_10152T0/1-778 GLLCHSARWA RPFPAALPHR PSGSSGPDAS NLQALSRCTP GLPGGLILRG ENSTTRP00000005058/1-794 ---------- ---------- ---------- ---------- ---------- 51 100 BACU006634/1-1056 ---------- -MASGAARYR LSCSLPGHEL DVRGLVCCLY PPGAFVSVSR ENSP00000380460/1-795 ---------- -MTSGATRYR LSCSLRGHEL DVRGLVCCAY PPGAFVSVSR ENSBTAP00000017298/1-796 ---------- -MASGSCRYR LSCSLSGHEL DVRGLVCCLY PPGAFVSVSR bmy_10152T0/1-778 AGAPDAGPTR AMASGAARYR LSCSLPGHEL DVRGLVCCLY PPGAFVSVSR ENSTTRP00000005058/1-794 ---------- -MAGGAARYR LSCSLPGHEL DVRGLVCCLY PPGAFVSVSR 101 150 BACU006634/1-1056 DRTTRLWVPD SPNRGFTEMH CMSGHSNFVS CVCIIPSSDM YPHGLIATGG ENSP00000380460/1-795 DRTTRLWAPD SPNRSFTEMH CMSGHSNFVS CVCIIPSSDI YPHGLIATGG ENSBTAP00000017298/1-796 DRTTRLWVPN SPNRGFTEMH CMSGHSNFVS CVCIIPSSDV YPHGLIATGG bmy_10152T0/1-778 DRTTRLWVPD SPNRSFTEMH CMSGHSNFVS CVCIIPSSDM YPHGLIATGG ENSTTRP00000005058/1-794 DRTTRLWVPD SPNRGFTEMH CMSGHSNFVS CVCIIPSSDM YPHGLIATGG 151 200 BACU006634/1-1056 NDHNICIFSL ESPAPLYVLK GHKNTVCSLS SGKFGTLLSG SWDTTAKVWL ENSP00000380460/1-795 NDHNICIFSL DSPMPLYILK GHKNTVCSLS SGKFGTLLSG SWDTTAKVWL ENSBTAP00000017298/1-796 NDHNICVFSL ESPAPLYVLK GHKNTVCSLS SGKFGTLLSG SWDTTAKVWL bmy_10152T0/1-778 NDHNICIFSL ESPAPLYVLK GHKNTVCSLS SGKFGTLLSG SWDTTAKVWL ENSTTRP00000005058/1-794 NDHNICIFSL ESPAPLYVLK GHKNTVCSLS SGKFGTLLSG SWDTTAKVWL 201 250 BACU006634/1-1056 NDKCMMTLQG HTAAVWAVKI LPEQGLMLTG SADKTIKLWK AGRCERTFSG ENSP00000380460/1-795 NDKCMMTLQG HTAAVWAVKI LPEQGLMLTG SADKTVKLWK AGRCERTFSG ENSBTAP00000017298/1-796 NDKCMMTLQG HTAAVWAVKI LPEQGLMLTG SADKTIKLWK AGRCERTFSG bmy_10152T0/1-778 NDKCMMTLQG HTAAVWAVKI LPEQGLMLTG SADKTIKLWK AGRCERTFS- ENSTTRP00000005058/1-794 NDKCMMTLQG HTAAVWAVKI LPEQGLMLTG SADKTIKLWK AGRCERTFSG 251 300 BACU006634/1-1056 HEDCVRGLAI LSETEFLSCA NDASIRRWQI TGECLEVFYG HTNYIYSISV ENSP00000380460/1-795 HEDCVRGLAI LSETEFLSCA NDASIRRWQI TGECLEVYYG HTNYIYSISV ENSBTAP00000017298/1-796 HEDCVRGLAI LSETEFLSCA NDASIRRWQI TGECLEVFYG HTNYIYSISV bmy_10152T0/1-778 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005058/1-794 HEDCVRGLAI LSETEFLSCA NDASIRRWQI TGECLEVFYG HTNYIYSISV 301 350 BACU006634/1-1056 FPNCKDFVTT AEDRSLRIWK HGECAQTIRL PAQSIWCCCV LDNGDIVVGA ENSP00000380460/1-795 FPNCRDFVTT AEDRSLRIWK HGECAQTIRL PAQSIWCCCV LDNGDIVVGA ENSBTAP00000017298/1-796 FPNCKDFVTT AEDRSLRIWK HGECAQTIRL PAQSIWCCCV LDNGDIVVGA bmy_10152T0/1-778 -----DFVTT AEDRSLRIWK HGECAQTIRL PAQSIWCCCV LDNGDIVVGA ENSTTRP00000005058/1-794 FPNCKDFVTT AEDRSLRIWK HGECAQTIRL PAQSIWCCCV LDNGDIVVGA 351 400 BACU006634/1-1056 SDGIIRVFTE SEDRTASAEE IKAFERELSQ ATIDSKTGDL GDINAEQLPG ENSP00000380460/1-795 SDGIIRVFTE SEDRTASAEE IKAFEKELSH ATIDSKTGDL GDINAEQLPG ENSBTAP00000017298/1-796 SDGIIRVFTE SEDRTASAEE IKAFERELSQ ATIDSKTGDL GDINAEQLPG bmy_10152T0/1-778 SDGIIRVFTE SEDRTASAEE IKAFERELSQ ATIDSKTGDL GDINAEQLPG ENSTTRP00000005058/1-794 SDGIIRVFTE SEDRTASAEE IKAFERELSQ ATIDSKTGDL GDINAEQLPG 401 450 BACU006634/1-1056 REHLNEPGTR EGQTRLIRDG EKVEAYQWSV SEGRWIKIGD VVGSSGANQQ ENSP00000380460/1-795 REHLNEPGTR EGQTRLIRDG EKVEAYQWSV SEGRWIKIGD VVGSSGANQQ ENSBTAP00000017298/1-796 REHLNEPGTR EGQTRLIRDG EKVEAYQWSI NERRWIKIGD VVGSSGASQQ bmy_10152T0/1-778 REHLNEPGTR EGQTRLIRDG EKVEAYQWSV SEGRWIKIGD VVGSSGANQQ ENSTTRP00000005058/1-794 REHLNEPGTR EGQTRLIRDG EKVEAYQWSV SEGRWIKIGD VVGSSGANQQ 451 500 BACU006634/1-1056 TSGKVLYEGK EFDYVFSIDV NEGGPSYKLP YNITDDPWLT AYNFLQKNDL ENSP00000380460/1-795 TSGKVLYEGK EFDYVFSIDV NEGGPSYKLP YNTSDDPWLT AYNFLQKNDL ENSBTAP00000017298/1-796 TSGKVLYEGK EFDYVFSIDV NEGGPSYKLP YNITDDPWLA AYNFLQKNDL bmy_10152T0/1-778 TSGKVLYEGK EFDYVFSIDV NEGGPSYKLP YNITDDPWLT AYNFLQKNDL ENSTTRP00000005058/1-794 TSGKVLYEGK EFDYVFSIDV NEG-PSYKLP YNITDDPWLT AYNFLQKN-L 501 550 BACU006634/1-1056 NPMFLDQVAK FIIDNTKGQM LGLGNPSFSD PFTGGGRYVP GSSSGSSNTL ENSP00000380460/1-795 NPMFLDQVAK FIIDNTKGQM LGLGNPSFSD PFTGGGRYVP GSS-GSSNTL ENSBTAP00000017298/1-796 NPMFLDQVAK FIIDNTKGQM LGLGNTSFSD PFTGGGRYVP GSSSGSSNTL bmy_10152T0/1-778 NPMFLDQVAK FIIDNTKGQM LGLGNPSFSD PFTGGGRYVP GSSTGSSNTL ENSTTRP00000005058/1-794 NPMFLDQVAK FIIDNTKGQM LGLGNPSFSD PFTGGGRYVP GSSSGSSNTL 551 600 BACU006634/1-1056 PAADPFT--- ---------- ---------- GNSAYQSAAS KTVNIYFPKK ENSP00000380460/1-795 PTADPFTGAG RYVPGSASMG TTMAGVDPFT GNSAYRSAAS KTMNIYFPKK ENSBTAP00000017298/1-796 PAADPFTGGG RYVPGSASMG TTMAGVDPFT GNSAYQSAAS KTVNIYFPKK bmy_10152T0/1-778 PAADPFT--- ---------- ---------- GNSAYQSAAS KTVNIYFPKK ENSTTRP00000005058/1-794 PAADPFTXXX XXXXXXXXXX XXXXXXXXXX XNSAYQSAAS KTVNIYFPKK 601 650 BACU006634/1-1056 EAVTFDQANP TQILGKLKEL NGTAWEEKKL TEDDLVFLEK ILSLICNNSS ENSP00000380460/1-795 EAVTFDQANP TQILGKLKEL NGTAPEEKKL TEDDLILLEK ILSLICNSSS ENSBTAP00000017298/1-796 EAVTFDQANP TQILGKLKEL NGTASEEKKL TEDDLVLLEK ILSLICNNSS bmy_10152T0/1-778 EAVTFDQANP TQILGKLKEL NGTASEEKKL TEDDLVLLEK ILSLICNNSS ENSTTRP00000005058/1-794 EAVTFDQANP TQILGKLKEL NGTASEEKKL TEDDLVLLEK ILSLICNNSS 651 700 BACU006634/1-1056 EKPTAQQLQI LWKAVNWPED HNIEGKAQCL SVISTVLEVV QDLEATFRLL ENSP00000380460/1-795 EKPTVQQLQI LWKAINCPED ---------- -IVFPALDIL R--------- ENSBTAP00000017298/1-796 EKPTAQQLQI LWKAVNWPED ---------- -IVFPALDIL R--------- bmy_10152T0/1-778 EKPTAQQLQI LWKAVNWPED ---------- -IVFPALDIL R--------- ENSTTRP00000005058/1-794 EKPTAQQLQI LWKAVNWPED ---------- -IVFPALDIL R--------- 701 750 BACU006634/1-1056 VALGTLISDD SNAVQLAKSL GVDSQIKKYA SVSEPAKLLR QAFGRSRSGG ENSP00000380460/1-795 ---------- ---------- ---------L SIKHPS--VN ENFCNEKEGA ENSBTAP00000017298/1-796 ---------- ---------- ---------L SIKHPS--VN ENFCNEKEGT bmy_10152T0/1-778 ---------- ---------- ---------L SIKHPS--VN ENFCNEKEGA ENSTTRP00000005058/1-794 ---------- ---------- ---------L SIKHPS--VN ENFCNEKEGA 751 800 BACU006634/1-1056 ISPDGCSGGI MTGKKSSREK RRKRSGQEAA AALTAPDPVP AVASGGSGST ENSP00000380460/1-795 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017298/1-796 ---------- ---------- ---------- ---------- ---------- bmy_10152T0/1-778 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005058/1-794 ---------- ---------- ---------- ---------- ---------- 801 850 BACU006634/1-1056 SGCGSASGCG SVTCCGNTSL SGSVTGGGSG GSCWGGSSVE RSERRKRRST ENSP00000380460/1-795 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017298/1-796 ---------- ---------- ---------- ---------- ---------- bmy_10152T0/1-778 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005058/1-794 ---------- ---------- ---------- ---------- ---------- 851 900 BACU006634/1-1056 DSSASVSGSL QQVRACSSRR FSKRLRFRKK EAKYLLPTLE KELFLAEHSD ENSP00000380460/1-795 ---------- ---------Q FSSHL----- ---------- -------INL ENSBTAP00000017298/1-796 ---------- ---------R FSSHL----- ---------- -------VSL bmy_10152T0/1-778 ---------- ---------R FSSHL----- ---------- -------ISL ENSTTRP00000005058/1-794 ---------- ---------R FSSHL----- ---------- -------ISL 901 950 BACU006634/1-1056 LEEGGLDLTV ALKPVSFYIS DKKEMLQQCF CIIGEKKLQK MLPDVLKNCS ENSP00000380460/1-795 LNPKGKPANQ LLALRTF--- --------CN CFVGQAGQKL MMSQ------ ENSBTAP00000017298/1-796 LNPRGKPANQ LLALRTF--- --------CN CFVGQAGQKL MMSQ------ bmy_10152T0/1-778 LNPKGKPANQ LLALRTF--- --------CN CFVGQAGQKL MMSQ------ ENSTTRP00000005058/1-794 LNPKGKPANQ LLALRTF--- --------CN CFVGQAGQKL MMSQ------ 951 1000 BACU006634/1-1056 IEEIKKLCQE QLELLSEKKI LKILEGDNGM DSDMEEEADD GSKMGSDLVS ENSP00000380460/1-795 ---------- -----RESLM SHAIELKSGS NKNIH----- --------IA ENSBTAP00000017298/1-796 ---------- -----RESLL SHAIELKSGS NKNIH----- --------IA bmy_10152T0/1-778 ---------- -----RESLL SHAIELKSGS NKNIH----- --------IA ENSTTRP00000005058/1-794 ---------- -----RESLL SHAIELKSGS NKNIH----- --------IA 1001 1050 BACU006634/1-1056 QQDICIDSTS CLRENKQPEG LELKQGKGED SDVLSINADA YDSDIEGPCN ENSP00000380460/1-795 LATLALNYSV CFHKDHNIEG ---------K AQCLSL---- ---------- ENSBTAP00000017298/1-796 LATLTLNYSV CFHKDHNIEG ---------K AQCLSV---- ---------- bmy_10152T0/1-778 LATLTLNYSV CFHKDHNIEG ---------K AQCLSV---- ---------- ENSTTRP00000005058/1-794 LATLTLNYSV CFHKDHNIEG ---------K AQCLSV---- ---------- 1051 1100 BACU006634/1-1056 EEAAAPEVSE NTVQSEAGQI DDLEKDIEKS VNEILGLAES SPKEPKAATL ENSP00000380460/1-795 ---------- ------ISTI LEVVQDLEAT FRLLVALGTL ISDDSNAVQL ENSBTAP00000017298/1-796 ---------- ------ISTV LEVVQDLEAT FRLLVALGTL VSDDSNAVQL bmy_10152T0/1-778 ---------- ------ISTV LEVVQDLEAT FRLLVALGTL ISDDSNAVQL ENSTTRP00000005058/1-794 ---------- ------ISTV LEVVQDLEAT FRLLVALGTL ISDDSNAVQL 1101 1150 BACU006634/1-1056 --TVPPPEDV QPSAQQLELL ELEMRARAIK ALMKAGDVKK PA ENSP00000380460/1-795 AKSLGVDSQI KKYSSVSEPA KVSECCRFIL NLL------- -- ENSBTAP00000017298/1-796 AKSLGVDSQI KKYASVSEPA KVSECCRLIL NLL------- -- bmy_10152T0/1-778 AKSLGVDSQI KKYASVSEPA KVSECCRLIL NLL------- -- ENSTTRP00000005058/1-794 AKSLGVDSQI KKYASVSEPA KVSECCRLIL NLL------- --