KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:07 2014 Check: 00 .. Name: ENSTTRP00000000238/1-1140 Len: 1447 Check: 8856 Weight: 1.00 Name: BACU001285/1-1267 Len: 1447 Check: 274 Weight: 1.00 Name: ENSP00000347427/1-1332 Len: 1447 Check: 8229 Weight: 1.00 Name: bmy_08647T0/1-1358 Len: 1447 Check: 1707 Weight: 1.00 Name: ENSBTAP00000017318/1-1309 Len: 1447 Check: 9430 Weight: 1.00 // 1 50 ENSTTRP00000000238/1-1140 ---------- ---------- ---------- ---------- ---------- BACU001285/1-1267 MSLVIPEKFQ HILRVLNTNI DGRRKIAFAI TAIK--GVGR RYAHVVLRKA ENSP00000347427/1-1332 MGDPAPA--- ---RSLD-DI D--------L SALR------ ---------- bmy_08647T0/1-1358 MGDPAPA--- ---RSLD-DI D--------L SALRLPATRL LWASPSMKTS ENSBTAP00000017318/1-1309 MGDPAPA--- ---RSLD-DI D--------L SALR------ ---------- 51 100 ENSTTRP00000000238/1-1140 ---------- ---------- ---------- ---------- ---------- BACU001285/1-1267 DIDLTKRAGE LTEDEVERVI TIMQNPRQYK IPDWFLNRQK DVKDGKYSQV ENSP00000347427/1-1332 ---------- ---------- ---------- ---------- ---------- bmy_08647T0/1-1358 GLDKAPSPGP VSGAAVSVGI ---------- ---------- ---------- ENSBTAP00000017318/1-1309 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000000238/1-1140 ---------- ---------- ---------- ---------- ---------- BACU001285/1-1267 LANGLDNKLC EDLERLKKMR AHRGLRHFWG LRDPAGIFEL VEVVGNGTYG ENSP00000347427/1-1332 ---------- ---------- ---------- --DPAGIFEL VEVVGNGTYG bmy_08647T0/1-1358 ---------- ---------- --------LG IEDPAGIFEL VEVVGNGTYG ENSBTAP00000017318/1-1309 ---------- ---------- ---------- --DPAGIFEL VEVVGNGTYG 151 200 ENSTTRP00000000238/1-1140 ---------- ---------- ---------- ---------- ---------- BACU001285/1-1267 QVYKGRHVKT GQLAAIKVMD VTEDEEEEIK QEINMLKKYS HHRNIATYYG ENSP00000347427/1-1332 QVYKGRHVKT GQLAAIKVMD VTEDEEEEIK QEINMLKKYS HHRNIATYYG bmy_08647T0/1-1358 QVYKGRHVKT GQLAAIKVMD VTEDEEEEIK QEINMLKKYS HHRNIATYYG ENSBTAP00000017318/1-1309 QVYKGRHVKT GQLAAIKVMD VTEDEEEEIK QEINMLKKYS HHRNIATYYG 201 250 ENSTTRP00000000238/1-1140 ---------- -----LVMEF CGAGSVTDLV KNTKGNALKE DCIAYICREI BACU001285/1-1267 AFIKKSPPGN DDQLWPSTEE RAEGSTA--- ---------- ---------V ENSP00000347427/1-1332 AFIKKSPPGN DDQLWLVMEF CGAGSVTDLV KNTKGNALKE DCIAYICREI bmy_08647T0/1-1358 AFIKKSPPGN DDQLWLVMEF CGAGSVTDLV KNTKGNALKE DCIAYICREI ENSBTAP00000017318/1-1309 AFIKKSPPGN DDQLWLVMEF CGAGSVTDLV KNTKGNALKE DCIAYICREI 251 300 ENSTTRP00000000238/1-1140 LRGLAHLHAH KVIHRDIKGQ NVLLTENAEV KLVDFGVSAQ LDRTVGRRNT BACU001285/1-1267 AAGL------ ---------- --------EL MPVDFGVSAQ LDRTVGRRNT ENSP00000347427/1-1332 LRGLAHLHAH KVIHRDIKGQ NVLLTENAEV KLVDFGVSAQ LDRTVGRRNT bmy_08647T0/1-1358 LRGLAHLHAH KVIHRDIKGQ NVLLTENAEV KLVDFGVSAQ LDRTVGRRNT ENSBTAP00000017318/1-1309 LRGLAHLHAH KVIHRDIKGQ NVLLTENAEV KLVDFGVSAQ LDRTVGRRNT 301 350 ENSTTRP00000000238/1-1140 FIGTPYWMAP EVIACDENPD ATYDYRSDIW SLGITAIEMA EGAPPLCDMH BACU001285/1-1267 FIGTPYWMAP EVIACDENPD ATYDYRSDIW SLGITAIEMA EGAPPLCDMH ENSP00000347427/1-1332 FIGTPYWMAP EVIACDENPD ATYDYRSDIW SLGITAIEMA EGAPPLCDMH bmy_08647T0/1-1358 FIGTPYWMAP EVIACDENPD ATYDYRSDIW SLGITAIEMA EGAPPLCDMH ENSBTAP00000017318/1-1309 FIGTPYWMAP EVIACDENPD ATYDYRSDIW SLGITAIEMA EGAPPLCDMH 351 400 ENSTTRP00000000238/1-1140 PMRALFLIPR NPPPRLKSKK WSKKFIDFID TCLIKTYLSR PPTEQLLKFP BACU001285/1-1267 PMRALFLIPR NPPPRLKSKK WSKKFIDFID TCLIKTYLSR PPTEQLLKFP ENSP00000347427/1-1332 PMRALFLIPR NPPPRLKSKK WSKKFIDFID TCLIKTYLSR PPTEQLLKFP bmy_08647T0/1-1358 PMRALFLIPR NPPPRLKSKK WSKKFIDFID TCLIKTYLSR PPTEQLLKFP ENSBTAP00000017318/1-1309 PMRALFLIPR NPPPRLKSKK WSKKFIDFID TCLIKAYLSR PPTEQLLKFP 401 450 ENSTTRP00000000238/1-1140 FIRDQPTERQ VRIQLKDHID RSRKKRGEKE ETEYEYSGSE EEDDSHGEEG BACU001285/1-1267 FIRDQPTERQ VRIQLKDHID RSRKKRGEKE ETEYEYSGSE EEDDSHGEEG ENSP00000347427/1-1332 FIRDQPTERQ VRIQLKDHID RSRKKRGEKE ETEYEYSGSE EEDDSHGEEG bmy_08647T0/1-1358 FIRDQPTERQ VRIQLKDHID RSRKKRGEKE ETEYEYSGSE EEDDSHGEEG ENSBTAP00000017318/1-1309 FIRDQPTERQ VRIQLKDHID RSRKKRGEKE ETEYEYSGSE EEDDSHGEEG 451 500 ENSTTRP00000000238/1-1140 EPSSIMNVPG ESTLRREFLR LQQENKSNSE ALK-QQQQLQ QQQQRDPEAH BACU001285/1-1267 EPSEMETSPH CP-------- ---------- ---------- ---------- ENSP00000347427/1-1332 EPSSIMNVPG ESTLRREFLR LQQENKSNSE ALK-QQQQLQ QQQQRDPEAH bmy_08647T0/1-1358 EPSSIMNVPG ESTLRREFLR LQQENKSNSE ALK-QQQQLQ QQQQRDPEAH ENSBTAP00000017318/1-1309 EPSSIMNVPG ESTLRREFLR LQQENKSNSE ALKQQQQQLQ QQQQRDPEAH 501 550 ENSTTRP00000000238/1-1140 IKHLLHQRQR RIEEQKEERR RVEEQQRRER EQRKLQEKEQ QRRREDMQAL BACU001285/1-1267 ---------- ---------- ----QQRRER EQRKLQEKEQ QRRLEDMQAL ENSP00000347427/1-1332 IKHLLHQRQR RIEEQKEERR RVEEQQRRER EQRKLQEKEQ QRRLEDMQAL bmy_08647T0/1-1358 IKHLLHQRQR RIEEQKEERR RVEEQQRRER EQRKLQEKEQ QRRLEDMQAL ENSBTAP00000017318/1-1309 IKHLLHQRQR RIEEQKEERR RVEEQQRRER EQRKLQEKEQ QRRLEDMQAL 551 600 ENSTTRP00000000238/1-1140 RREEERRQAE REQEYKRKQL -EEQRQSERL QRQLQQEHAY LKSLQ----- BACU001285/1-1267 RREEERRQAE REQEYIRHRL EEEQRQLEIL QQQLLQEQAL LL-------- ENSP00000347427/1-1332 RREEERRQAE REQEYKRKQL -EEQRQSERL QRQLQQEHAY LKSLQQQQQQ bmy_08647T0/1-1358 RREEERRQAE REQEYKRKQL -EEQRQSERL QRQLQQEHAY LKSL------ ENSBTAP00000017318/1-1309 RREEERRQAE REQEYKRKQL -EEQRQSERL QRQLQQEHAY LKSQQQQQQQ 601 650 ENSTTRP00000000238/1-1140 -----QQQQQ ILPGDRKPLY HYGRGINPAD KPAWAREVEE RMXXXXXXXX BACU001285/1-1267 ---------- ---------- ---------- -------VEE RTRMNKQQNS ENSP00000347427/1-1332 QQLQKQQQQQ LLPGDRKPLY HYGRGMNPAD KPAWAREVEE RTRMNKQQNS bmy_08647T0/1-1358 -----QQQQQ VLPGDRKPLY HYGRGINPAD KPAWAREVEE RTRMNKQQNS ENSBTAP00000017318/1-1309 QL---QKQQQ ILPGDRKPLY HYGRGINPAD KPAWAREVEE RTRMNKQQNS 651 700 ENSTTRP00000000238/1-1140 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU001285/1-1267 PLAKTKPGST GPEPPVPQAS PGPPGPLSQT PPMQRPVEPQ EGPHKSLVAH ENSP00000347427/1-1332 PLAKSKPGST GPEPPIPQAS PGPPGPLSQT PPMQRPVEPQ EGPHKSLVAH bmy_08647T0/1-1358 PLAKTKPGST GPEPPVPQAS PGPPGPLSQT PPMQRPVEPQ EGPHKSLVAH ENSBTAP00000017318/1-1309 PLAKSKPGST GPEPPIPQAS PGPPGPLSQT PPMQRPVEPQ EGPHK----- 701 750 ENSTTRP00000000238/1-1140 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU001285/1-1267 RVPLKPYAAP VPRSQSLQDQ PTRNLAAFPA SHDPDPAVPA PTATPSARGA ENSP00000347427/1-1332 RVPLKPYAAP VPRSQSLQDQ PTRNLAAFPA SHDPDPAIPA PTATPSARGA bmy_08647T0/1-1358 RVPLKPYAAP VPRSQSLQDQ PTRNLAAFPA SHDPDPAVPA PTATPSARGA ENSBTAP00000017318/1-1309 ---------- -----SLQDQ PTRNLAAFPA SHDPDPAVPA PTATPSARGA 751 800 ENSTTRP00000000238/1-1140 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU001285/1-1267 VIRQNSDPTS EGPGPSPNPP AWVRPDNEAP PKVPQRTSSI ATALNTSGAG ENSP00000347427/1-1332 VIRQNSDPTS EGPGPSPNPP AWVRPDNEAP PKVPQRTSSI ATALNTSGAG bmy_08647T0/1-1358 VIRQNSDPTS EGPGPSPNPP AWVRPDNEAP PK---RTSSI ATALNTSGAG ENSBTAP00000017318/1-1309 VIRQNSDPTS EGPGPSPNPP AWVRPDNEAP PKVPQRTSSI ATALNTSGAG 801 850 ENSTTRP00000000238/1-1140 XXXXXXXXXX XPRSNSAWQI YLQRRAERGN PKPPGPPAQP PGPPNACSNP BACU001285/1-1267 GSRPAQAVRA RPRSNSAWQI YLQRRAERGN PKPPGPPAQP PGPPNACSNP ENSP00000347427/1-1332 GSRPAQAVRA RPRSNSAWQI YLQRRAERGT PKPPGPPAQP PGPPNASSNP bmy_08647T0/1-1358 GSRPAQAVRA RPRSNSAWQI YLQRRAERGN PKPPGPPAQP PGPPNACSNP ENSBTAP00000017318/1-1309 GSRPAQAVRA RPRSNSAWQI YLQRRAERGS PKPPGPPAPP PGPPNACSNP 851 900 ENSTTRP00000000238/1-1140 DLRRSDPGWE RSDSVLPASH GHLPQAGSLE RNRVGVSSKL DSSPVLSPGS BACU001285/1-1267 DLRRSDPGWE RSDSVLPASH GRLPQAGSLE RNRVGA---- ---PPLQ--- ENSP00000347427/1-1332 DLRRSDPGWE RSDSVLPASH GHLPQAGSLE RNRVGVSSKP DSSPVLSPGN bmy_08647T0/1-1358 DLRRSDPGWE RSDSVLPASH GRLPQAGSLE RNRVGASSKL DSSPVLSPGN ENSBTAP00000017318/1-1309 DLRRSDPGWE RSDSVLPASH GHLPQAGSLE RNRVGASSKL DNSPVLSPGN 901 950 ENSTTRP00000000238/1-1140 KAKPDDHRSR PGRPADFVLL KERTLDEAPR PPKKAMDYSS SSEEVESSED BACU001285/1-1267 ---------- -----DFVLL KERTLDEAPR PPKKAMDYSS SSEEVESSED ENSP00000347427/1-1332 KAKPDDHRSR PGRPADFVLL KERTLDEAPR PPKKAMDYSS SSEEVESSED bmy_08647T0/1-1358 KAKPDDHRSR PGRPADFVLL KERTLDEAPR PPKKAMDYSS SSEEVESSED ENSBTAP00000017318/1-1309 KTKPDDHRSR PGRPADFVLL KERTLDEAPR PPKKAMDYSS SSEEVESSED 951 1000 ENSTTRP00000000238/1-1140 DEEESNGEPS EGSRDTPGGR SDGDTDSVST MVVHDVEEIA GTQTPYGGGT BACU001285/1-1267 DEEESNGEPS EGSRDTPGGR SDGDTDSVST MVVHDVEEIA GTQTPYGGGT ENSP00000347427/1-1332 DEEEGEGGPA EGSRDTPGGR SDGDTDSVST MVVHDVEEIT GTQPPYGGGT bmy_08647T0/1-1358 DEEESNGEPS EGSRDTPGGR SDGDTDSVST MVVHDVEEIA GTQTPYGGGT ENSBTAP00000017318/1-1309 EEEESNGEPS EGSRDAPGAR -DGDTDSVST MVVHDVEEIA GPQTPYGGGT 1001 1050 ENSTTRP00000000238/1-1140 MVVQRTPEEE RSLLHADSNG YTNLPDVVQP SHSPTESSKG QSPPLKDGGS BACU001285/1-1267 MVVQRTPEEE RSLLHADSNG YTNLPDVVQP SHSPTESSKG QSPPLKDGGS ENSP00000347427/1-1332 MVVQRTPEEE RNLLHADSNG YTNLPDVVQP SHSPTENSKG QSPPSKDGSG bmy_08647T0/1-1358 MVVQRTPEEE RSLLHADSNG YTNLPDVVQP SHSPTESSKG QSPPLKDGGS ENSBTAP00000017318/1-1309 MVVQRTPEEE RSLLHADSNG YTNLPDVVQP SHSPTESSKG QSPPLKDGGS 1051 1100 ENSTTRP00000000238/1-1140 DYQSRGLVKA PGKSSFTMFV DLGIYQPGGS GDTIPITALV GGEGSRLDQL BACU001285/1-1267 DYQSRGLVKA PGKSSFTMFV DLGIYQPGGS GDTIPITALV GGEGSRLDQL ENSP00000347427/1-1332 DYQSRGLVKA PGKSSFTMFV DLGIYQPGGS GDSIPITALV GGEGTRLDQL bmy_08647T0/1-1358 DYQSRGLVKA PGKSSFTMFV DLGIYQPGGS GDTIPITALV GGEGSRLDQL ENSBTAP00000017318/1-1309 DYQSRGLVKA PGKSSFTMFV DLGIYQPGGS GDTIPITALV GGEGSRLDQL 1101 1150 ENSTTRP00000000238/1-1140 QYDVRKGSVV NVNPTNTRAH SETPEIRKYK KRFNSEILCA ALWGVNLLVG BACU001285/1-1267 QYDVRKGSVV NVNPTNTRAH SETPEIRKYK KRFNSEILCA ALWGVNLLVG ENSP00000347427/1-1332 QYDVRKGSVV NVNPTNTRAH SETPEIRKYK KRFNSEILCA ALWGVNLLVG bmy_08647T0/1-1358 QYDVRKGSVV NVNPTNTRAH SETPEIRKYK KRFNSEILCA ALWGVNLLVG ENSBTAP00000017318/1-1309 QYDVRKGSVV NVNPTNTRAH SETPEIRKYK KRFNSEILCA ALWGVNLLVG 1151 1200 ENSTTRP00000000238/1-1140 TENGLMLLDR SGQGKVYGLI GRRRFQQMDV LEGLNLLITI SGKRNKLRVY BACU001285/1-1267 TENGLMLLDR SGQGKVYGLI GRRRFQQMDV LEGLNLLITI SGKRNKLRVY ENSP00000347427/1-1332 TENGLMLLDR SGQGKVYGLI GRRRFQQMDV LEGLNLLITI SGKRNKLRVY bmy_08647T0/1-1358 TENGLMLLDR SGQGKVYGLI GRRRFQQMDV LEGLNLLITI SGKRNKLRVY ENSBTAP00000017318/1-1309 TENGLMLLDR SGQGKVYGLI GRRRFQQMDV LEGLNLLITI SGKRNKLRVY 1201 1250 ENSTTRP00000000238/1-1140 YLSWLRNKIL HNDPEVEKKQ GWTTVGDMEG CGHYRVVKYE RIKFLVIALK BACU001285/1-1267 YLSWLRNKIL HNDPEVEKKQ GWTTVGDMEG CGHYRVVKYE RIKFLVIALK ENSP00000347427/1-1332 YLSWLRNKIL HNDPEVEKKQ GWTTVGDMEG CGHYRVVKYE RIKFLVIALK bmy_08647T0/1-1358 YLSWLRNKIL HNDPEVEKKQ GWTTVGDMEG CGHYRVVKYE RIKFLVIALK ENSBTAP00000017318/1-1309 YLSWLRNKIL HNDPEVEKKQ GWTTVGDMEG CGHYRVVKYE RIKFLVIALK 1251 1300 ENSTTRP00000000238/1-1140 NSVEVYAWAP KPYHKFMAFK SFADLPHRPL LVDLTVEEGQ RLKVIYGSSA BACU001285/1-1267 NSVEVYAWAP KPYHKFMAFK SFADLPHRPL LVDLTVEEGQ RLKVIYGSSA ENSP00000347427/1-1332 SSVEVYAWAP KPYHKFMAFK SFADLPHRPL LVDLTVEEGQ RLKVIYGSSA bmy_08647T0/1-1358 NSVEVYAWAP KPYHKFMAFK SFADLPHRPL LVDLTVEEGQ RLKVIYGSSA ENSBTAP00000017318/1-1309 NSVEVYAWAP KPYHKFMAFK SFADLPHRPL LVDLTVEEGQ RLKVIYGSSA 1301 1350 ENSTTRP00000000238/1-1140 GFHAVDVDSG NSYDIYIPVH IQSQITPHAI IFLPNTDGME MLLCYEDEGV BACU001285/1-1267 GFHAVDVDSG NSYDIYIPVH IQSQITPHAI IFLPNTDGME MLLCYEDEGV ENSP00000347427/1-1332 GFHAVDVDSG NSYDIYIPVH IQSQITPHAI IFLPNTDGME MLLCYEDEGV bmy_08647T0/1-1358 GFHAVDVDSG NSYDIYIPVH IQSQITPHAI IFLPNTDGME MLLCYEDEGV ENSBTAP00000017318/1-1309 GFHAVDVDSG NSYDIYIPVH IQSQITPHAI IFLPNTDGME MLLCYEDEGV 1351 1400 ENSTTRP00000000238/1-1140 YVNTYGRIIK DVVLQWG--- ---------- ---------- ---------- BACU001285/1-1267 YVNTYGRIIK DVVLQWGEMP TSVAYICSNQ IMGWGEKAIE IRSVETGHLD ENSP00000347427/1-1332 YVNTYGRIIK DVVLQWGEMP TSVAYICSNQ IMGWGEKAIE IRSVETGHLD bmy_08647T0/1-1358 YVNTYGRIIK DVVLQWGEMP TSVAYICSNQ IMGWGEKAIE IRSVETGHLD ENSBTAP00000017318/1-1309 YVNTYGRIIK DVVLQWGEMP TSVAYICSNQ IMGWGEKAIE IRSVETGHLD 1401 1450 ENSTTRP00000000238/1-1140 ---------- ---------- ---------- ---------- ------- BACU001285/1-1267 GVFMHKRAQR LKFLCERNDK VFFASVRSGG SSQVYFMTLN RNCIMNW ENSP00000347427/1-1332 GVFMHKRAQR LKFLCERNDK VFFASVRSGG SSQVYFMTLN RNCIMNW bmy_08647T0/1-1358 GVFMHKRAQR LKFLCERNDK VFFASVRSGG SSQVYFMTLN RNCIMNW ENSBTAP00000017318/1-1309 GVFMHKRAQR LKFLCERNDK VFFASVRSGG SSQVYFMTLN RNCIMNW