KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:09 2014 Check: 00 .. Name: bmy_10941T0/1-745 Len: 869 Check: 8889 Weight: 1.00 Name: BACU004933/1-742 Len: 869 Check: 590 Weight: 1.00 Name: ENSP00000260403/1-643 Len: 869 Check: 7084 Weight: 1.00 Name: ENSTTRP00000015127/1-641 Len: 869 Check: 7089 Weight: 1.00 Name: ENSBTAP00000017324/1-645 Len: 869 Check: 9462 Weight: 1.00 // 1 50 bmy_10941T0/1-745 MAASLAFRVV AGLAAAALAA VLLEHYGLAG PPSPLPQPRI PRSPHPAPGP BACU004933/1-742 MAAALAVRVV AGLAAAALAA VLLEHYGLAG PPSPLPQPRI PRSPHPAPGP ENSP00000260403/1-643 MAAVLALRVV AGLAAAALVA MLLEHYGLAG QPSPLPRPAP PRRPHPAPGP ENSTTRP00000015127/1-641 MVAALAVRVV AGLAAAALAA VLLEHYGLAG PPSPLPRPAP P-SPHPAPGL ENSBTAP00000017324/1-645 MASGLAVRVV AGLAAAALAA VFLEHYGLAG RSSSLPQPRT PRSPHPAPGS 51 100 bmy_10941T0/1-745 GASNIFWGLQ ISDIHLSRFR DPGRAVDLEK FCSETIDIIQ PALVL--AT- BACU004933/1-742 RASNIFWGLQ ISDIHLSRFR DPGRAVDLEK FCSETIDIIQ PALVL--ATG ENSP00000260403/1-643 GDSNIFWGLQ ISDIHLSRFR DPGRAVDLEK FCSETIDIIQ PALVL--ATG ENSTTRP00000015127/1-641 GASNIFWGLQ ISDIHLSRFR DPGRAVDLEK FCSETIDIIQ PALVL--ATG ENSBTAP00000017324/1-645 GASNIFWGLQ ISDIHLSRFH DPGRAVDLEK FCSETVDIIQ PALVLATATG 101 150 bmy_10941T0/1-745 ---------- ---------- ----VLILYC QLFEAS---- -----DAFNI BACU004933/1-742 DLTDAKTKEN LGSRQQEAEW QTYQGILKKT RVMEKTKWLD IKGNHDAFNI ENSP00000260403/1-643 DLTDAKTKEQ LGSRQHEVEW QTYQGILKKT RVMEKTKWLD IKGNHDAFNI ENSTTRP00000015127/1-641 DLTDAKTKEN LGSRQQEAEW QTYQGILKKT RVMEKTKWLD IKGNHXXXXX ENSBTAP00000017324/1-645 DLTDAKTKDN LGSMQQEVEW QTYHSILKKT KVMEKTKWLD IKGNHDAFNI 151 200 bmy_10941T0/1-745 PSLESVENYY RKYSAVRRDG SFHYVHSTPF GNYSFISLDA TLNPGPKRPF BACU004933/1-742 PSLESVENYY RKYSAVRRDG SFHYVHSTPF GNYSFISLDA TLNPGPKRPF ENSP00000260403/1-643 PSLDSIKNYY RKYSAVRRDG SFHYVHSTPF GNYSFICVDA TVNPGPKRPY ENSTTRP00000015127/1-641 XXXXXXXXXX XKYSAVRRDG SFHYVHSTPF GNYSFISLDA TVNPGPKRPF ENSBTAP00000017324/1-645 PSLESVENYY RKYSAVRRDG SFRYVHSTPF GNYSFISLDA SLNPGPKRPF 201 250 bmy_10941T0/1-745 NFFGILDQKQ MEDLLLLAKE SSGSNHSIWF GHFTTSTILS PSPGIRSIM- BACU004933/1-742 NFFGILDQKQ MEDLLLLAKE SSRSNHSIWF GHFTTSTILS PSPGIRSIMS ENSP00000260403/1-643 NFFGILDKKK MEELLLLAKE SSRSNHTIWF GHFTTSTILS PSPGIRSIMS ENSTTRP00000015127/1-641 NFFGILDQKQ MEDLSLLAKE SSRSNHSIWF GHFTTSTILS PSPGIRSIMS ENSBTAP00000017324/1-645 NFFGILNQKQ MEELLLLAKE SSWSNHSIWF GHYTTSTILS PSPGLRSIMS 251 300 bmy_10941T0/1-745 ---------- ---------- ---------- ---------- RYRIFAFDHD BACU004933/1-742 SATAYLCGHL HTLGGLMPVL HTRHFQGTLE LEVGDWMVNR RYRIFAFDHD ENSP00000260403/1-643 SAIAYLCGHL HTLGGLMPVL HTRHFQGTLE LEVGDWKDNR RYRIFAFDHD ENSTTRP00000015127/1-641 SATAYLCGHL HTLGGLMPVL HTRHFQGTLE LEVGDWKDNR RYRIFAFDHD ENSBTAP00000017324/1-645 SATAYLCGHL HTLGGLMPVL HTRHFQGPLE LELGDWKDNR RYRIFAFDHD 301 350 bmy_10941T0/1-745 LFSFADLIFG EWPVVLITNP KSLLYSSAKY EPLERLLHST HIRVLVFSLS BACU004933/1-742 LFSFADLIFG EWPVVLITNP KSLLYSSAKH EPLERLLHST HIRVLVFSLS ENSP00000260403/1-643 LFSFADLIFG KWPVVLITNP KSLLYSCGEH EPLERLLHST HIRVLAFSLS ENSTTRP00000015127/1-641 LFSFADLIFG EWPVVLITNP KSLLYSSAKH EPLERLLHST HIRVLVF-LS ENSBTAP00000017324/1-645 LFSFADLIFG EWPVVLITNP KSLLYSSAKH EPLERLLHST HIRVLAFSLS 351 400 bmy_10941T0/1-745 SITSVAVKID GVHLGQASHL SGPIFILKWN PRNYSNKTHN IEVIVQ---- BACU004933/1-742 SITSVAVKID GVHLGQASHL SGPIFILKWN PRNYSNKTHN IEIIVQDSAG ENSP00000260403/1-643 SITSVTVKID GVHLGQAVHV SGPIFVLKWN PRNYSSGTHN IEVIVQDSAG ENSTTRP00000015127/1-641 SITSVAVKID GVHLGQASHL SGPIFILKWN PRNYSNRTHN IEVIVQDSAG ENSBTAP00000017324/1-645 SITSVAVKID GVPLGQASHL SGPIFILKWN PRNYSNKTHN IEVIVQDSAG 401 450 bmy_10941T0/1-745 ---------- ---------- ---------- ----ARVLFV MIVLIQLIIL BACU004933/1-742 RSKSVHHIFS AREDIHLRFD PLASFILLTD HCTVARVLFV MIVLIQLIIL ENSP00000260403/1-643 RSKSVHHIFS VQENNHLSFD PLASFILRTD HYIMARVLFV LIVLSQLTIL ENSTTRP00000015127/1-641 RSKSVHHIFS AREDIHLRFD PLASFILLTD HCTVARVLFV MIVLIQLIIL ENSBTAP00000017324/1-645 RSKSVQHIFS AREDIQLRFD PLASFILLTD HCTVARVIFV MIVLIQLIIL 451 500 bmy_10941T0/1-745 ITFRYRAYPE HKGPPGFVNL TSFSLHVLSK ISIFYYSVLL LTLYTVLGPW BACU004933/1-742 ITFRYRTYPE HKGPPGFVNL TSFSLHVLSK ISIFYYSVLL LTLYTVLG-- ENSP00000260403/1-643 IIFRYRGYPE LKEPSGFINL TSFSLHVLSK INIFYYSVLL LTLYTVLGPW ENSTTRP00000015127/1-641 IAFRYRAYPE HKGPPGFVNL TSFSLHVLSK ISIFYYSMLL LTLYTVLGPW ENSBTAP00000017324/1-645 IIFRYQAYPE HKGPPGFINL TSFSLHVLSK LNISYYSVLL LTLYTVLGPW 501 550 bmy_10941T0/1-745 FVGEITKGKL GCCFSFGIFV DGRFLQGSVT FIVGILQMAS VAASAAADST BACU004933/1-742 ---------- ---------- ---------- ---------- ---------- ENSP00000260403/1-643 FFGEIIDGKF GCCFSFGIFV NGHFLQGSIT FIIGILQL-- ---------- ENSTTRP00000015127/1-641 FVGEITKGKL GCCFSFGIFV DGHFLQGSVT FIVGILQL-- ---------- ENSBTAP00000017324/1-645 FVGEITKGKL GCCFSFGIFV DGHFLQGSLT FIVGILQL-- ---------- 551 600 bmy_10941T0/1-745 LLPPLEQLRH LAGELRFLLP GVRGEAAMAV SRAATTLTEV FSRLPLPSPQ BACU004933/1-742 ---------- ---------- ----EAAMAV SRAATTLTEV FSRLPLPSPQ ENSP00000260403/1-643 ---------- ---------- ---------- ---------A FFNIPL---- ENSTTRP00000015127/1-641 ---------- ---------- ---------- ---------V FFNIPL---- ENSBTAP00000017324/1-645 ---------- ---------- ---------- ---------V FFNIPL---- 601 650 bmy_10941T0/1-745 ETQKFSEEVH AAIKAIIAVY YSLPKDQGIT LRKLVRSATL DIVDGMAQLV BACU004933/1-742 ETQKFSEQVH AAIRAIIAVY YSLPKDQ--- ---------- ---------- ENSP00000260403/1-643 ---------- -----MAYMC WSL------- ---------- ---------- ENSTTRP00000015127/1-641 ---------- -----MVYLC WSL------- ---------- ---------- ENSBTAP00000017324/1-645 ---------- -----MVYVC WIL------- ---------- ---------- 651 700 bmy_10941T0/1-745 EVLYITPTQS TSNSSLIDNK AAALSVLTKS VDLVKDAHEE MEQAVEECDP BACU004933/1-742 ---------- -------DNK AAALSVLTKS VDLVKDAHEE MEQAVEECDP ENSP00000260403/1-643 ---------- ---------- ---------- ---------- ----LQRC-- ENSTTRP00000015127/1-641 ---------- ---------- ---------- ---------- ----LQRC-- ENSBTAP00000017324/1-645 ---------- ---------- ---------- ---------- ----LQRC-- 701 750 bmy_10941T0/1-745 YYGLLSDIEE DNSDNHGDEE DILGCPSNRD SYWSEEDQEL IIPCLALVRA BACU004933/1-742 YYGLLSDIEE DNSDNHGDEE DILGCPSNRD SYWSEEDQEL IIPCLALVRA ENSP00000260403/1-643 -FG------- ---------- ------HNFR SHLHQRKYLK IMPVHLLM-- ENSTTRP00000015127/1-641 -FG------- ---------- ------HSFK SHLHQGKYLK IVPVHLLM-- ENSBTAP00000017324/1-645 -FG------- ---------- ------HSFR SHLRQGKYLK IIPVHLLM-- 751 800 bmy_10941T0/1-745 SKACLKKIRL SVAENGKKDQ VAQLDDIVDI SDEISPSVDD LALSIYPPVC BACU004933/1-742 SKACLKKIRL SVAENGKKDQ VAQLDDIVDI SDEISPSVDD LALSIYPPVC ENSP00000260403/1-643 ---------- ---------- ---------- ---------- LLLYIWQVYS ENSTTRP00000015127/1-641 ---------- ---------- ---------- ---------- LLLYIWQIYS ENSBTAP00000017324/1-645 ---------- ---------- ---------- ---------- LLLYIWHIYS 801 850 bmy_10941T0/1-745 HLTVRINCAK LVSVLKKALE ITKASHVTPQ PEDSWIPLLI NAVDHCMNRI BACU004933/1-742 HLTVRINCAK LVSVLKKALE ITKASHVTPQ PEDSWIPLLI NAVDHCMNRI ENSP00000260403/1-643 CYFLYATYGT LAFLF----- ---------S PLRTWLTLLT PVLIRYVWTL ENSTTRP00000015127/1-641 CYFLHMTYGT LALLF----- ---------S PLRTWLTLVT PVLIRCVWTL ENSBTAP00000017324/1-645 CYFLHVTYGT LALLF----- ---------S PLRTWLTLVT PVLIRCVWTL 851 900 bmy_10941T0/1-745 K--------- ELTQHEVES BACU004933/1-742 K--------- ELTQHEVES ENSP00000260403/1-643 NSTKFGIFMV QLKSH-LSS ENSTTRP00000015127/1-641 NSAELGTFIV QLKSH-LSS ENSBTAP00000017324/1-645 NAAELGTFIV QLKSH-LSS