KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:12 2014 Check: 00 .. Name: ENSTTRP00000007664/1-505 Len: 515 Check: 1492 Weight: 1.00 Name: ENSBTAP00000017339/1-506 Len: 515 Check: 3558 Weight: 1.00 Name: ENSP00000358563/1-514 Len: 515 Check: 5918 Weight: 1.00 Name: bmy_17923T0/1-505 Len: 515 Check: 9517 Weight: 1.00 Name: BACU010884/1-395 Len: 515 Check: 7225 Weight: 1.00 // 1 50 ENSTTRP00000007664/1-505 -MADAEXXXX XXXXXXXXXX XXXXXXXXXE IQHAEEFLIK PESKVAQLDT ENSBTAP00000017339/1-506 -MADAEVLIL PKKHKKKKER KSLPEEAVAE IQHAEEFLIK PESRVAQLDT ENSP00000358563/1-514 -MADAEVIIL PKKHKKKKER KSLPEEDVAE IQHAEEFLIK PESKVAKLDT bmy_17923T0/1-505 -MADAEVLIL PKKHKKKKER KSLPEEDVAE IQHAEEFLIK PESKVAQLDT BACU010884/1-395 MPAGLPVLIL PKKHKKKKEQ KSLAEEDVA- ---------- ---------- 51 100 ENSTTRP00000007664/1-505 SQWPLLLKNF DKLNVRTTHY TPLPCGSNPL KREIGDYIRT GFINLDKPSN ENSBTAP00000017339/1-506 SQWPLLLKNF DKLNVRTTHY TPLPCGSNPL KREIGDYIRT GFINLDKPSN ENSP00000358563/1-514 SQWPLLLKNF DKLNVRTTHY TPLACGSNPL KREIGDYIRT GFINLDKPSN bmy_17923T0/1-505 SQWPLLLKNF DKLNVRTTHY TPLPCGSNPL KREIGDYIRT GFINLDKPSN BACU010884/1-395 --------NF DKLNVRTTHY TPLPCGSNPL KREIGDYIRT GFINLDKPSN 101 150 ENSTTRP00000007664/1-505 PSSHEVVAWI RRILRVEKTG HSGTLDPKVT GCLIVCIERA TRLVKSQQSA ENSBTAP00000017339/1-506 PSSHEVVAWI RRILRVEKTG HSGTLDPKVT GCLIVCIERA TRLVKSQQSA ENSP00000358563/1-514 PSSHEVVAWI RRILRVEKTG HSGTLDPKVT GCLIVCIERA TRLVKSQQSA bmy_17923T0/1-505 PSSHEVVAWI RRILRVEKTG HSGTLDPKVT GCLIVCIERA TRLVKSQQSA BACU010884/1-395 PSSHEVVAWI RRILRVEKTG HSGTLDPKVT GCLIVCIERA TRLVKSQQSA 151 200 ENSTTRP00000007664/1-505 GKEYVGIVRL HNAIEGGTQL SRALETLTGA LFQRPPLIAA VKRQLRVRTI ENSBTAP00000017339/1-506 GKEYVGIVRL HNAIEGGTQL SRALETLTGA LFQRPPLIAA VKRQLRVRTI ENSP00000358563/1-514 GKEYVGIVRL HNAIEGGTQL SRALETLTGA LFQRPPLIAA VKRQLRVRTI bmy_17923T0/1-505 GKEYVGIVRL HNAIEGGTQL SRALETLTGA LFQRPPLIAA VKRQLRVRTI BACU010884/1-395 GKEYVGIVRL HNAIEGGTQL SRALETLTGA LFQRPPLIAA VKRQLRVRTI 201 250 ENSTTRP00000007664/1-505 YESKMIEYDP ERRLGIFWVS CEAGTYIRTL CVHLGLLLGV GGQMQELRRV ENSBTAP00000017339/1-506 YESKMIEYDP ERRLGIFWVS CEAGTYIRTL CVHLGLLLGV GGQMQELRRV ENSP00000358563/1-514 YESKMIEYDP ERRLGIFWVS CEAGTYIRTL CVHLGLLLGV GGQMQELRRV bmy_17923T0/1-505 YESKMIEYDP ERRLGIFWVS CEAGTYIRTL CVHLGLLLGV GGQMQELRRV BACU010884/1-395 YESKMIEYDP ERRLGIFWVS CEAGTYIRTL CVHLGLLLGV GGQMQELRRV 251 300 ENSTTRP00000007664/1-505 RSGVMSEKDH MVTMHDVLDA QWLYDNHKDE SYLRRVVYPL EKLLTSHKRL ENSBTAP00000017339/1-506 RSGVMSEKDH MVTMHDVLDA QWLYDNHKDE SYLRRVVYPL EKLLTSHKRL ENSP00000358563/1-514 RSGVMSEKDH MVTMHDVLDA QWLYDNHKDE SYLRRVVYPL EKLLTSHKRL bmy_17923T0/1-505 RSGVMSEKDH MVTMHDVLDA QWLYDNHKDE SYLRRVVYPL EKLLTSHKRL BACU010884/1-395 RSGVMSEKDH MVTMHDVLDA QWLYDNHKDE SYLRRVVYPL EKLLTSHKRL 301 350 ENSTTRP00000007664/1-505 VMKDSAXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000017339/1-506 VMKDSAVNAI CYGAKIMLPG VLRYEDGIEV NQEIVVITTK GEAICMAIAL ENSP00000358563/1-514 VMKDSAVNAI CYGAKIMLPG VLRYEDGIEV NQEIVVITTK GEAICMAIAL bmy_17923T0/1-505 VMKDSAVNAI CYGAKIMLPG VLRYEDGIEV NQEIVVITTK GEAICMAVAL BACU010884/1-395 VMKDSA---- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000007664/1-505 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000017339/1-506 MTTAVISTCD HGIVAKIKRV IMERDTYPRK WGLGPKASQK KLMIKQGLLD ENSP00000358563/1-514 MTTAVISTCD HGIVAKIKRV IMERDTYPRK WGLGPKASQK KLMIKQGLLD bmy_17923T0/1-505 MTTAVISTCD HGIVAKIKRV IMERDTYPRK WGLGPKASQK RLMIKQGLLD BACU010884/1-395 ---------- ---------- ---------- ------ASQK RLMIKQGLLD 401 450 ENSTTRP00000007664/1-505 XXXXXXXXXX XXXXXXXXXX XDSARKD--- --VKAPQVVA EAVKAPKRKR ENSBTAP00000017339/1-506 KHGKPTDSTP ATWMQEYVDY SNSAKKDVPP KAVKATPVVA EVVKTPKRKR ENSP00000358563/1-514 KHGKPTDSTP ATWKQEYVDY SESAKKEVVA EVVKAPQVVA EAAKTAKRKR bmy_17923T0/1-505 KHGKPTDNTP AAWTQEYVDY SDSARKD--- --VKAPQVVA EAVKAPKRKR BACU010884/1-395 KHGKPTDSTP AAWTQEYVDY SDSARKD--- --VKAPQVVA EAVKAPKRKR 451 500 ENSTTRP00000007664/1-505 --ESESDETS SVAPQLVKKE KKK-KKDKKA KAALESVDEP GDGDSDTTKK ENSBTAP00000017339/1-506 --ESESEDTS PAAPQVVKKE KKK-KKKEKA KAAAEK---P GAGDSDST-K ENSP00000358563/1-514 ESESESDETP PAAPQLIKKE KKKSKKDKKA KAGLESGAEP GDGDSDTTKK bmy_17923T0/1-505 --ESESDETS PVAPQLVKKE KKK-KKDKKA KAALESVDEP GDGDSDTTKK BACU010884/1-395 --ESESDETS PVAPQLVKKE KKK-KKDKKA RAAPESADEP GDGDSDTTKK 501 550 ENSTTRP00000007664/1-505 KKKKKKIK-V EIFAD ENSBTAP00000017339/1-506 KKKKKKIK-A EMVSE ENSP00000358563/1-514 KKKKKKAKEV ELVSE bmy_17923T0/1-505 KKKKKKIK-V EILSE BACU010884/1-395 KKKKKKIK-V EIF--