KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:13 2014 Check: 00 .. Name: ENSTTRP00000009960/1-312 Len: 984 Check: 5179 Weight: 1.00 Name: ENSP00000473474/1-388 Len: 984 Check: 4598 Weight: 1.00 Name: bmy_12041T0/1-615 Len: 984 Check: 5253 Weight: 1.00 Name: ENSBTAP00000017350/1-391 Len: 984 Check: 1340 Weight: 1.00 Name: BACU013837/1-958 Len: 984 Check: 7565 Weight: 1.00 // 1 50 ENSTTRP00000009960/1-312 ---------- ---------- ---------- ---------- ---------- ENSP00000473474/1-388 ---------- ---------- ---------- ---------- ---------- bmy_12041T0/1-615 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017350/1-391 ---------- ---------- ---------- ---------- ---------- BACU013837/1-958 MLCAVTHCVW RMSLQKQLSR ATRMYERRIE WLSLASRRIW GTVCEKRVVI 51 100 ENSTTRP00000009960/1-312 ---------- ---------- ---------- ---------- ---------- ENSP00000473474/1-388 ---------- ---------- ---------- ---------- ---------- bmy_12041T0/1-615 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017350/1-391 ---------- ---------- ---------- ---------- ---------- BACU013837/1-958 LLDISVTNSM YIIHIQHSLR LLLEEQLSNK DCFNIITYAP ASCFPLPVAV 101 150 ENSTTRP00000009960/1-312 ---------- ---------- ---------- ---------- ---------- ENSP00000473474/1-388 ---------- ---------- ---------- ---------- ---------- bmy_12041T0/1-615 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017350/1-391 ---------- ---------- ---------- ---------- ---------- BACU013837/1-958 EVDFKDKDKQ QSQGIYLFTG GIPDQDVAML SAYMAEARVG CDFQLNVCLF 151 200 ENSTTRP00000009960/1-312 ---------- ---------- ---------- ---------- ---------- ENSP00000473474/1-388 ---------- ---------- ---------- ---------- ---------- bmy_12041T0/1-615 -MKPNLAGSS PEACKAAGQG EQSC--PVCQ AWGG------ ---------- ENSBTAP00000017350/1-391 ---------- ---------- ---------- ---------- ---------- BACU013837/1-958 YVGESQMDTT PPACYASRTD TAAAYREVAR AAGGRFHWFG DTGIYESDDI 201 250 ENSTTRP00000009960/1-312 ---------- ---------- ---------- ---------- ---------- ENSP00000473474/1-388 ---------- ---------- ---------- ---------- ---------- bmy_12041T0/1-615 ---------- ---------- VSSLGSESGP GPGPGAVSRP GPG------- ENSBTAP00000017350/1-391 ---------- ---------- ---------- ---------- ---------- BACU013837/1-958 SAITSEMEKA LNYSQKCALL VSSLKNQSGK EQESAALRRE KPKMLKLRSQ 251 300 ENSTTRP00000009960/1-312 ---------- ---------- ---------- ---------- ---------- ENSP00000473474/1-388 ---------- ---------- ---------- ---------- ---------- bmy_12041T0/1-615 PGVVLEPGPG PAAVSRPGLG PGAVSGPGPG PGTVPGPGLG PGVVLEPGSR ENSBTAP00000017350/1-391 ---------- ---------- ---------- ---------- ---------- BACU013837/1-958 PGKFGPSKPT APSVARMSIK DDPAREKSPP LKALLWSPLS GKAGVPPATA 301 350 ENSTTRP00000009960/1-312 ---------- ---------- ---------- ---------- ---------- ENSP00000473474/1-388 ---------- ---------- ---------- ---------- ---------- bmy_12041T0/1-615 PGAASGAGPG TGAVSGPGKE PSAVL----- GPRQGPGAVL GPGPGPGAAS ENSBTAP00000017350/1-391 ---------- ---------- ---------- ---------- ---------- BACU013837/1-958 QPVKEGTADR RRKTKSRDAE TSISLFYTET GNNVGSRRLF GAILESKVCI 351 400 ENSTTRP00000009960/1-312 ---------- ---------- ---------- ---------- ---------- ENSP00000473474/1-388 ---------- ---------- ---------- ---------- ---------- bmy_12041T0/1-615 APGPALGPGP GAGSVPG--- ---------- ---------- ---------- ENSBTAP00000017350/1-391 ---------- ---------- ---------- ---------- ---------- BACU013837/1-958 LLDTSGSMGP CLQQVKTELA LLIWEQLWKH CDRLKEEALS LNDKSKAFSF 401 450 ENSTTRP00000009960/1-312 ---------- ---------- ---------- ---------- ---------- ENSP00000473474/1-388 ---------- ---------- ---------- ---------- ---------- bmy_12041T0/1-615 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017350/1-391 ---------- ---------- ---------- ---------- ---------- BACU013837/1-958 PDVEGLYLLT DGKPDTSCSL ILSEVQRLKE KRDVKVHTVS LNCSDRTAVN 451 500 ENSTTRP00000009960/1-312 ---------- ---------- ---------- ---------- ---------- ENSP00000473474/1-388 ---------- ---------- ---------- ---------- ---------- bmy_12041T0/1-615 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017350/1-391 ---------- ---------- ---------- ---------- ---------- BACU013837/1-958 FLRDLASLTG GRYHCPVSED SLFKIQGLLT RGFIDQRDPM LPLFEGDDLR 501 550 ENSTTRP00000009960/1-312 ---------- ---------- ---------- ---------- ---------- ENSP00000473474/1-388 ---------- ---------- ---------- ---------- ---------- bmy_12041T0/1-615 ---------- ---------- ------SGAA PLSGSGVGPG PRRESGAGQK ENSBTAP00000017350/1-391 ---------- ---------- ---------- ---------- ---------- BACU013837/1-958 RLAQEITKAR SFLWQAQSFR PRNLGIEGPS FFISCSLGPN SRRKTTQNRR 551 600 ENSTTRP00000009960/1-312 ---------- -------ATP VQASKQKVLV TGGGGYLGFS LGSSLAKSGT ENSP00000473474/1-388 ---------- ---------- ------KVLV TGGGGYLGFS LGSHLAKSGT bmy_12041T0/1-615 PSEPVTAPMP ALQQKTRATP VQASQQKVLV TGGGGYLGFS LGSSLAKSGT ENSBTAP00000017350/1-391 ---------- -------ATP GQASRQKVVV TGGAGYLGFS LGSSLAKSGT BACU013837/1-958 -SLRFRKVFS ALQQKTQATP VQASKQKVLV TGGGGYLGFS LGSSLAKSGT 601 650 ENSTTRP00000009960/1-312 SVILLDLRRP QWVLCPGTEF IQXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000473474/1-388 SVILLDRRRP QWELSPETKF IQADVRDEEA LYRAFEGVDC VFHVASYGMS bmy_12041T0/1-615 XVILLDLRRP QWVLCPGTEF IQADVRDAEA LHRAFEGVDC VFHMASCGMS ENSBTAP00000017350/1-391 SVILLDLRRP QWELCPGTEF IQADVRNAEA LHRTFEGVDC VFHVASYGMS BACU013837/1-958 SVILLDLRRP QWVLCPGTEF IQADVRDAEA LHRAFEGVDC VFHMASCGMS 651 700 ENSTTRP00000009960/1-312 XXXXLQKEQI ESINVGGTKL VIDVCVHRRV PRLVYTSTVN VAFGGKPIEQ ENSP00000473474/1-388 GAEKLQKEQI ESINVGGTKL VIDVCVRRRV PRLIYTSTVN VAFGGKPIEQ bmy_12041T0/1-615 GAEQLQKEQI ESINVGGTKL VIDVCVHRRV PRLVYTSTVN VAFGGKPIEQ ENSBTAP00000017350/1-391 GAEQLQKEQI ESINVGGTKL VIDVCVRQRV PRLVYTSTVN VAFGGKPIEQ BACU013837/1-958 GAEQLQKEQI ESINVGGTKL VIDVCVHRRV PRLVYTSTVN VAFGGKPIEQ 701 750 ENSTTRP00000009960/1-312 GDEDSVPYFP LEK------- ---------- ---HVDHYSR TKAIADQLIL ENSP00000473474/1-388 GDEDSVPYFP LDE------- ---------- ---HVDHYSR TKAIADQLTL bmy_12041T0/1-615 GDEDSVPYFP LEKVPGFQER WAGPMDLEPT VQRHMDHYSR TKAIADQLIL ENSBTAP00000017350/1-391 GDEDSVPYFP LEK------- ---------- ---HTDHYSR TKAIADQLIL BACU013837/1-958 GDEDSVPYFP LEK------- ---------- ---HMDHYSR TKAIADQLIL 751 800 ENSTTRP00000009960/1-312 MANGTPLPGG GALRTCVLRP PGIYGPEEQR HLPRVASHIK KRLFMFRFGD ENSP00000473474/1-388 MANGMPLPGG GTLRTCVLRP PGIYGPEEQR HLPRVAGHIK KRLFMFRFGD bmy_12041T0/1-615 MANGMPLPGG GALRTCVLRP PGIYGPEEQR HLPRVV---- KRLFMFRFGD ENSBTAP00000017350/1-391 MANGTPLPGG GSLRTCVLRP PGIYGPEEQR HLPRVASYIK KRLFMFRFGD BACU013837/1-958 MANGTPLPGG GALRTCVLRP PGIYGPEEQR HLPRVAGHIK KRLFMFRFGD 801 850 ENSTTRP00000009960/1-312 RRTRMNWVHV CNLVQAHVLA AEALTASKGY VASGQAYYIN DGESVNIFEW ENSP00000473474/1-388 HKARMNWVHV HNLVQAHVLA AEALTTAKGY VASGQAYYIN DGESVNLFEW bmy_12041T0/1-615 RRTRMNWVHV CNLVQAHVLA AEALTAAKGY VASGQAYYIN DGESVNLFEW ENSBTAP00000017350/1-391 RRTQMNWVHV RNLVQAHVLA AEALTAAKGH VASGQAYYIN DGESVNLFEW BACU013837/1-958 RRTRMNWVHV CNLVQAHVLA AEALTAAKGY VASGQAYYIN DGESVNLFEW 851 900 ENSTTRP00000009960/1-312 MAPLFEKLGY SKPWIQ-STS WVYLSATVME YLHLALKPIC SLPPLLTRSE ENSP00000473474/1-388 MAPLFEKLGY SQPWIQVPTS WVYLTAAVME RLHLALRPIC SLPPLLTRSE bmy_12041T0/1-615 MAPLFEKLGY SKPWIQVPTS WVYLSATVME YLHLALKPIC SLPPLLTRSE ENSBTAP00000017350/1-391 MAPLFEKLGY SQPWIQVPTS WVYLSATVME YLHLALRPIC SLPPLLTRSE BACU013837/1-958 MAPLFEKLGY SKPWIQVPTS WVYLSATVME YLHLALKPIC SLPPLLTRSE 901 950 ENSTTRP00000009960/1-312 ---------- ---------- ---------- ---------- ---------- ENSP00000473474/1-388 VRSVAVTHTF QIAKARAQLG YAPDKFRFAD AVELYVQSTT RRPRGSTART bmy_12041T0/1-615 VRSVAVTHTF QIAKARAQLG YVPDKFSFAD AVERYVQSTG RGTRGSTART ENSBTAP00000017350/1-391 VRSVAVTHTF QIAKARAQLG YVPDKFSFAD AVERYVQSTA GRTRGSNART BACU013837/1-958 VRSVAVTHTF QIAKARAQLG YVPDKFSFAD AVERYVQSTG RGTRGSTART 951 1000 ENSTTRP00000009960/1-312 ---------- ---------- ---------- ---- ENSP00000473474/1-388 LLRLLLRLLL FLGLLALALH FLGLQPLHAA VERL bmy_12041T0/1-615 LLRLLLGLLL LLGLLVLALH FLGPRPFVV- ---- ENSBTAP00000017350/1-391 LLRLLLGLLL FLGLLVLALR FLGLQPSI-- ---- BACU013837/1-958 LLRLLLGLLL LLGLLVLALH FLGPRPFVV- ----