KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:14 2014 Check: 00 .. Name: ENSP00000361895/1-543 Len: 563 Check: 1929 Weight: 1.00 Name: ENSBTAP00000017353/1-454 Len: 563 Check: 6183 Weight: 1.00 Name: BACU000404/1-549 Len: 563 Check: 7965 Weight: 1.00 Name: ENSTTRP00000004822/1-510 Len: 563 Check: 9608 Weight: 1.00 Name: bmy_02087T0/1-514 Len: 563 Check: 6328 Weight: 1.00 // 1 50 ENSP00000361895/1-543 MAKGEGAESG SAAGLLPTSI LQSTERPAQV KKEPKKKKQQ LSVCNKLCYA ENSBTAP00000017353/1-454 MAKGEGAESG SAAGLLPTGI LQAGERPVQV KKEPKKKK-Q LSICNKLCYA BACU000404/1-549 MAKGEGAESG SAAGLLPTGI LQAGERPVQV KKESKKKN-Q LSICNKLCYA ENSTTRP00000004822/1-510 ---------- ---------- ---------- --ESKKKN-Q LSICNKLCYA bmy_02087T0/1-514 MAKGEGAESG SAAGLLPTGI LQAGERPVQV KKESKKKN-Q LSICNKLCYA 51 100 ENSP00000361895/1-543 LGGAPYQVTG CALGFFLQIY LLDVAQKDEE VVFCFSSFQV GPFSASIILF ENSBTAP00000017353/1-454 VGGAPYQVTG CALGFFLQIY LLDVA----- --------QV DPFSASIILF BACU000404/1-549 VGGAPYQVTG CALGFFLQIY LLDVA----- --------QV DPFSASIILF ENSTTRP00000004822/1-510 VGGTPYQVTG CALGFFLQIY LLDVAQKDEE VIFCLSPSQV DPFSASIILF bmy_02087T0/1-514 VGGAPYQVTG CALGFFLQIY LLDVA----- --------QV DPFSASIILF 101 150 ENSP00000361895/1-543 VGRAWDAITD PLVGLCISKS PWTCLGRLMP WIIFSTPLAV IAYFLIWFVP ENSBTAP00000017353/1-454 VGRAWDAITD PLVGFCISKS PWTRLGRLMP WITFSTPLAI IAYFLIWFVP BACU000404/1-549 VGRAWDAITD PLVGFCISKS PWTRLGRLMP WIIFSTPLAI IAYFLIWFVP ENSTTRP00000004822/1-510 VGRAWDAITD PLVGFCISKS PWTRLGRLMP WIIFSTPLAI IAYFLIWFVP bmy_02087T0/1-514 VGRAWDAITD PLVGFCISKS PWTRLGRLMP WIIFSTPLAI IAYFLIWFVP 151 200 ENSP00000361895/1-543 DFPHGQTYWY LLFYCLFETM VTCFHVPYSA LTMFISTEQT ERDSATAYRM ENSBTAP00000017353/1-454 DFHQGQTLWY LLFYCLFETL VTCFHVPYSA LTMFISTEQS ERDSATAYRM BACU000404/1-549 DFQQGQTLWY LLFYCLFETL VTCFHVPYSA LTMFISTEQS ERDSATAYRM ENSTTRP00000004822/1-510 DFQQGQTLWY LLFYCLFETL VTCFHVPYSA LTMFISTEQS ERDSATAYRM bmy_02087T0/1-514 DFQQGQTLWY LLFYCLFETL VTCFHVPYSA LTMFISTEQS ERDSATAYRM 201 250 ENSP00000361895/1-543 TVEVLGTVLG TAIQGQIVGQ ADTPCFQDLN SSTVASQSAN HTHGTTSHRE ENSBTAP00000017353/1-454 TVEVLGTVLG TAIQGQIVGQ ADSPCIPDAN ASTV-----N RTQSSTSIKE BACU000404/1-549 TVEVLGTVLG TAIQGQIVGQ AHTPCVQDTN ASTVALEGAN RTQSATSLRE ENSTTRP00000004822/1-510 TVEVLGTVLG TAIQGQIVGQ AHTPCVQDAN ASTVALEGVN RTQSATSLRE bmy_02087T0/1-514 TVEVLGTVLG TAIQGQIVGQ AHTPCVQDAN ASTVALEGVN RTQSATSLRE 251 300 ENSP00000361895/1-543 TQKAYLLAAG VIVCIYIICA VILILGVREQ REPYEAQQSE PIAYFRGLRL ENSBTAP00000017353/1-454 TQNAYLLAAG VIASIYVICA VILILGVREQ RESYETQQTK QMPFFRGLRL BACU000404/1-549 TQNAYLLAAG VIASIYVICA VILTLGVREQ REPYETQQAK AMPFFRGIRL ENSTTRP00000004822/1-510 TQNAYLLAAG VIASIYVICA VILTLGVREQ REPYETQQAK PMPFFRGLRL bmy_02087T0/1-514 TVRPWQGRGG ---------- -----GDEER WEPYETQQAK PMAFFRGIRL 301 350 ENSP00000361895/1-543 VMSHGPYIKL ITGFLFTSLA FMLVEGNFVL FCTYTLGFRN EFQNLLLAIM ENSBTAP00000017353/1-454 VMSHGPYIKL IAGFLFTSLA FMLVEGNFAL FCTYTLGFRN EFQNLLLAIM BACU000404/1-549 VMSHGPYIKL IAGFLFTSLA FMLVEGNFAL FCTYTLGFRN EFQNLLLAIM ENSTTRP00000004822/1-510 VMSHGPYIKL IAGFLFTSLA FMLVEGNFAL FCTYTLGFRN EFQNLLLAIM bmy_02087T0/1-514 VMSHGPYIKL IAGFLFTSLA FMLVEGNFAL FCTYTLGFRN EFQNLLLAIM 351 400 ENSP00000361895/1-543 LSATLTIPIW QWFLTRFGKK TAVYVGISSA VPFLILVALM ESNLIITYAV ENSBTAP00000017353/1-454 FSATVTIPIW QWFLTRFGKK TAVYIGISSA VPFLILVALM ESNLIVTYVV BACU000404/1-549 FSATVTIPIW QWFLTRFGKK MAVYIGISSA VPFLILVALM ESNLIVTYVV ENSTTRP00000004822/1-510 FSATVTIPIW QWFLTRFGKK MAVYIGISSA VPFLILVALM ESNLIVTYVV bmy_02087T0/1-514 FSATVTIPIW QWFLTRFGKK MAVYIGISSA VPFLILVALM ESNLIVTYVV 401 450 ENSP00000361895/1-543 AVAAGISVAA AFLLPWSMLP DVIDDFHLKQ PHFHGTEPIF FSFYVFFTKF ENSBTAP00000017353/1-454 AVAAGISVAA AFLLPWSMLP DVIDDFHLKQ PHIHGTEPIF FSFYVFFTKF BACU000404/1-549 AVAAGISVAA AFLLPWSMLP DVIDDFHLKQ PHIHGTEPIF FSFYVFFTKF ENSTTRP00000004822/1-510 AVAAGVSVAA AFLLPWSMLP DVIDDFHLKQ PHIHGTEPIF FSFYVFFTKF bmy_02087T0/1-514 AVAAGISVAA AFLLPWSMLP DVIDDFHLKQ PHIHGTEPIF FSFYVFFTKF 451 500 ENSP00000361895/1-543 ASGVSLGIST LSLDFAGYQT RGCSQPERVK FTLNMLVTMA PIVLILLGLL ENSBTAP00000017353/1-454 ASGVSLGIST LSLE------ -----PA--- ---------- ---------- BACU000404/1-549 ASGVSLGIST LSLDFTGYQT RGCSQPAPVK FTLKMLVTMA PIVLILIGLL ENSTTRP00000004822/1-510 ASGVSLGIST LSLDFTGYQT RGCSQPARVK FTLKMLVTMA PIVLILIGLL bmy_02087T0/1-514 ASGVSLGIST LSLDFTGYQT RGCSQPAPVK FTLKMLVTMA PIVLILIGLL 501 550 ENSP00000361895/1-543 LFKMYPIDEE RRRQNKKALQ ALRDEA---- ---------S SSGCSETDST ENSBTAP00000017353/1-454 ---------- -------ALQ AVPH------ ---------- ---------- BACU000404/1-549 LFKLYPIDEE KRRQNKKALQ ALRQSTYPST PPLLRTRCGS DSTCWKKGET ENSTTRP00000004822/1-510 LFKLYPIDEE KRRQNKKALQ ALREEA---- ---------S SSGCSDTDST bmy_02087T0/1-514 LFKLYPIDEE KRRQNKKALQ ALREEA---- ---------S SSGCSDTDST 551 600 ENSP00000361895/1-543 ELASIL---- --- ENSBTAP00000017353/1-454 ---------- --- BACU000404/1-549 PFNIAKKDFQ ICP ENSTTRP00000004822/1-510 ELARIL---- --- bmy_02087T0/1-514 ELARIL---- ---