KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:18 2014 Check: 00 .. Name: ENSTTRP00000009961/1-615 Len: 641 Check: 1850 Weight: 1.00 Name: BACU001118/1-448 Len: 641 Check: 8593 Weight: 1.00 Name: ENSP00000367125/1-609 Len: 641 Check: 9569 Weight: 1.00 Name: ENSBTAP00000017381/1-634 Len: 641 Check: 2473 Weight: 1.00 Name: bmy_09532T0/1-608 Len: 641 Check: 7232 Weight: 1.00 // 1 50 ENSTTRP00000009961/1-615 MSDERRLPGS AVGWLACGGL SLLANAWGIL SVGAKQKKWK PLEFLLCMLA BACU001118/1-448 MSDERRLPGS AVGWLACGGL SLLANAWGIL SVGAKQKKWK PLEFLLCTLA ENSP00000367125/1-609 MSDERRLPGS AVGWLVCGGL SLLANAWGIL SVGAKQKKWK PLEFLLCTLA ENSBTAP00000017381/1-634 MSDERRLPGS AVGWLACGGL SLLANAWGIL SVGAKQKKWK PLEFLLCTLA bmy_09532T0/1-608 MSDERRLPGS AVGWLACGGL SLLANAWGIL SVGAKQKKWK PLEFLLCTLA 51 100 ENSTTRP00000009961/1-615 ATHMLNVAVP IATYAVVQLR RQRPDYEWNE GLCKVFVSTF YTLTLATCFS BACU001118/1-448 ATHMLNVAVP IATYAVVQLR RQRPDYEWNE GLCKVFVSTF YTLTLATCFS ENSP00000367125/1-609 ATHMLNVAVP IATYSVVQLR RQRPDFEWNE GLCKVFVSTF YTLTLATCFS ENSBTAP00000017381/1-634 ATHMLNVAVP IATYAVVQLR RQRPDYEWNE GLCKVFVSTF YTLTLATCFS bmy_09532T0/1-608 ATHMLNVAVP IATYAVVQLR RQRPDYEWNE GLCKVFVSTF YTLTLATCFS 101 150 ENSTTRP00000009961/1-615 VTSLSYHRMW MVRWPVNYRL SNAKKQAVHT VMGIWMVSFI LSALPAVGWH BACU001118/1-448 VTSLSYHRMW MVRWPVNYRL SNAKKQAVHT VMGIWMVSFI LSALPAVGWH ENSP00000367125/1-609 VTSLSYHRMW MVCWPVNYRL SNAKKQAVHT VMGIWMVSFI LSALPAVGWH ENSBTAP00000017381/1-634 VTSLSYHRMW MVRWPVNYRL SNAKKQAVHT VMGIWMVSFI LSALPAVGWH bmy_09532T0/1-608 VTSLSYHRMW MVRWPVNYRL SNAKKQAVHT VMGIWMVSFI LSALPAVGWH 151 200 ENSTTRP00000009961/1-615 DTSERFYTHG CHFIVAEIGL GFGVCFLLLV GGSVAMGVVC TAIALFQTLA BACU001118/1-448 DTSERFYTHG CHFIVAEIGL GFGVCFLLLV GGSVAMGVVC TAIALFQTLA ENSP00000367125/1-609 DTSERFYTHG CRFIVAEIGL GFGVCFLLLV GGSVAMGVIC TAIALFQTLA ENSBTAP00000017381/1-634 DTSERFYTHG CRFIVAEIGL GFGVCFLLLV GGSVAMGAVC TAIALFQTLA bmy_09532T0/1-608 DTSERFYTHG CHFIVAEIGL GFGVCFLLLV GGSVATGVVC TAIALFQTLA 201 250 ENSTTRP00000009961/1-615 VQVGRRADRH AFTVPTIVVE DAQGKRRSSI DGSEPARTSL QITGLVATIV BACU001118/1-448 VQVGRRADRH AFTVPTIVVE DAQGKRRSSI DGSEPARTSL QVTGLVATIV ENSP00000367125/1-609 VQVGRQADRR AFTVPTIVVE DAQGKRRSSI DGSEPAKTSL QTTGLVTTIV ENSBTAP00000017381/1-634 VQVGRRADRR AFTVPTIVVE DAQGKRRSSI DGSEPARTSL QITGLVATIV bmy_09532T0/1-608 VQVGRRADRH AFTVPTIVVE DAQGKRRSSI DGSEPARTSL QITGLVATIV 251 300 ENSTTRP00000009961/1-615 VIYDCLMGFP VLXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU001118/1-448 VIYDCLMGFP VLVVSFSSLR ADASAPWMAL CVLWCSVTQA LLLPLFLWAC ENSP00000367125/1-609 FIYDCLMGFP VLVVSFSSLR ADASAPWMAL CVLWCSVAQA LLLPVFLWAC ENSBTAP00000017381/1-634 VIYDCLMGFP VLVVSFSSLR ADASAPWMAL CVLWCSVTQA LLLPVFLWAC bmy_09532T0/1-608 VIYDCLMGFP --VVSFSSLR ADASAPWMAL CVLWCSVTQA LLLPLFLWAC 301 350 ENSTTRP00000009961/1-615 XXXXXXXXXX XXXXXXXXXX XXXXXXXTSL EGGIPPDLVL DRSLDYSYGG BACU001118/1-448 DRYRADLKAV WEKCVALMAN DEDSDDETSL EGGIPPDLVL DRSLDYSYGG ENSP00000367125/1-609 DRYRADLKAV REKCMALMAN DEESDDETSL EGGISPDLVL ERSLDYGYGG ENSBTAP00000017381/1-634 DRYRADFKAV WEKCMALMAN DEESDDDTSL EGGVPPDLVL ERSLDYNYGG bmy_09532T0/1-608 DRYRADLKAV WEKCMALMAN DEDSDDETSL EGGIPPDLVL DRSLDYSYGG 351 400 ENSTTRP00000009961/1-615 DFVALDRTAK YELSAL-EGD LPQFYPLRPL QEDKMQYL-- ---------- BACU001118/1-448 DFVAPDRTAT YELSAL-EGD LPQFCPPRPL QDDKMRYL-- ---------- ENSP00000367125/1-609 DFVALDRMAK YEISAL-EGG LPQLYPLRPL QEDKMQYL-- ---------- ENSBTAP00000017381/1-634 DFVALDRMAK YELSALEEGG LPQFYPLRPL QEDKMQYLQS RSPSCACPVS bmy_09532T0/1-608 DFVALDGTAT YELSAL-EGD LPQFCPPRPL QEDKMQYL-- ---------- 401 450 ENSTTRP00000009961/1-615 ---------- --QXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU001118/1-448 ---------- --QVV----L CNPICGVSYA LTVWRFF--- ---------- ENSP00000367125/1-609 ---------- --QVPPTRRF SHDDADVWAA VPLPAFLPRW GSGEDLAALA ENSBTAP00000017381/1-634 QGCLSPPKMG WPQVPPTRRF SHDDADVWAA VPLPTFLPHW GSGEDLAA-- bmy_09532T0/1-608 ---------- --QVPPTRRF SHDDADVWAA VPLPTFLPRW GSGEDLAA-- 451 500 ENSTTRP00000009961/1-615 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU001118/1-448 ---------- ---------- -------RDR TEEEEISL-- ---------- ENSP00000367125/1-609 HLVLPAGPER RRASLLAFAE DAPPSRARRR SAESLLSLRP SALDSGPRGA ENSBTAP00000017381/1-634 -LVMPSGPDR RRGSLLAFAE DAPPFRPRRR SAESLLSLRP LALDDSPRRA bmy_09532T0/1-608 -LVLPGGPDR RRGGLL--AE DAPPFRPRRR SAESLLSLRP PALDDGPRLA 501 550 ENSTTRP00000009961/1-615 XXXXXXXXXX XXXXXXXXXX XXXXPDAFAL TSFDREPQAL RLQPASPGPF BACU001118/1-448 ---------- ---------- ---------I HFFGDEYLEY KK-------- ENSP00000367125/1-609 RDSPPGSPRR RPGPGPRSAS ASLLPDAFAL TAFECEPQAL RR---PPGPF ENSBTAP00000017381/1-634 PGSPPSSPRR RPGPGVRCAS ASLLPDAFAL TAFEREPQAL RRQPGPPGSF bmy_09532T0/1-608 PGSPPGSPRR RAGPGARSAS ASLLPDAFAL TAFEREPQAL RRQPASPEPF 551 600 ENSTTRP00000009961/1-615 PA-APCRDGA QPGGDAAPPG GGGGAQRSPG PRPAAHAHSR TLRTGLSASW BACU001118/1-448 ---------- ---------- ------RVPT GLP------- -FIKGVKVEL ENSP00000367125/1-609 PAAPAAPDGA DPGEAPTPP- --SSAQRSPG PRPSAHSHAG SLRPGLSASW ENSBTAP00000017381/1-634 PACAPAADRT QPGGDVAPP- -GGGAQRSPG PLPDAHMHSG TLRTGLSASW bmy_09532T0/1-608 PVRALPRDGA QPGGDAAPP- GGGGAQRSPG PRPAAHARPR TLRTGLSASW 601 650 ENSTTRP00000009961/1-615 GEPGGLRAAG GGGGSISSFL SSPSESSGYV TLHSDSMGSA S BACU001118/1-448 ---------- ---------- ---------- ---------- - ENSP00000367125/1-609 GEPGGLRAA- GGGGSTSSFL SSPSESSGYA TLHSDSLGSA S ENSBTAP00000017381/1-634 GEPDGLRAA- -GAGSTSSFL SSPSESSGYV TLHSDSLGSA S bmy_09532T0/1-608 GEPGGLRAAG GGGGSTSSFL SSPSESSGYV TLHSGSMGSA S