KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:19 2014 Check: 00 .. Name: ENSP00000356156/1-713 Len: 714 Check: 8922 Weight: 1.00 Name: ENSBTAP00000017382/1-698 Len: 714 Check: 3304 Weight: 1.00 Name: ENSTTRP00000011493/1-531 Len: 714 Check: 412 Weight: 1.00 Name: bmy_02399T0/1-709 Len: 714 Check: 8061 Weight: 1.00 Name: BACU001100/1-677 Len: 714 Check: 4742 Weight: 1.00 // 1 50 ENSP00000356156/1-713 MEPGTGGSRK RLGPRAGFRF -WPPFFPRRS QAGSSKFPTP LGPENSGNPT ENSBTAP00000017382/1-698 MEPAADSSRE -----PDPRF RLPSFFPRPS GSGTSRFPAP LSPEP--DPR ENSTTRP00000011493/1-531 ---------- ---------- ---------- ---------- ---------- bmy_02399T0/1-709 MEPAADGSRE RAAPLADSRF RLPFFFPRRS RPGTSKFPAP PASEHSGDLK BACU001100/1-677 MEPAADGSRE RAAPLADSRF RLPFFFPRRS RPGTSKFPAP PASEHSGDLK 51 100 ENSP00000356156/1-713 LLSSAQPETR VSYWTKLLSQ LLAPLPGLLQ KVLIWSQLFG GMFPTRWLDF ENSBTAP00000017382/1-698 LAPSPPPEAR SSSWMQLLSQ LLAPLPGLLQ KLLVWSQLFG GMIPTRWLDF ENSTTRP00000011493/1-531 ---------- ---------- ---------- ---------- ---------- bmy_02399T0/1-709 LAXCPPPEAR RSSWMQVLSQ FFAPLPGLLQ KLLIWSQLFG GMIPTRWLDF BACU001100/1-677 LASCPPPEAR RSSWMQVLSQ LFAPLPGLLQ KLLIWSQLFG GMIPTRWLDF 101 150 ENSP00000356156/1-713 AGVYSALRAL KGREKPAAPT AQKSLSSLQL DSSDPSVTSP LDWLEEGIHW ENSBTAP00000017382/1-698 AGGYGLLRA- --RKEPAAPS APKALSSLRL DPSADAAASP LDWLEGGLHW ENSTTRP00000011493/1-531 ---------- ---------- ---------- ---------- ---------- bmy_02399T0/1-709 AGGYSVLRAL RAREEPAAPT APKSLSSLRL DPSADAAAVP LDWLEEGIHW BACU001100/1-677 AGGYSVLRAL RAREEPAAPT APKSLSSLRL DPSADAAAVP LDWLEEGIHW 151 200 ENSP00000356156/1-713 QYSPPDLKLE LKAKGSALDP AAQAFLLEQQ LWGVELLPSS LQSRLYSNRE ENSBTAP00000017382/1-698 QCSPPDLELE LKPKGRALDS AAHAFLLEQP LWGVELVPRS VQARLFSDPE ENSTTRP00000011493/1-531 ---------- ---------- --------QQ LWGVEL---- -QANLFSGRE bmy_02399T0/1-709 QCSSPDLELE LKAKGGTLDS AAHAFLLEQQ LWGVEL---- -QASLFSGRE BACU001100/1-677 QCSSPDLELE LKARGGTLDS AAHAFLLEQQ LWGVEL---- -QASLFSGRE 201 250 ENSP00000356156/1-713 LGSSPSGPLN IQRIDNFSVV SYLLNPSYLD CFPRLEVSYQ NSDGNSEVVG ENSBTAP00000017382/1-698 LGPSPSGPLS VQRLSNVSVV SYLLNPSYLD CLPRVELSYQ SSVGSCELVD ENSTTRP00000011493/1-531 LGPSPSGPLN VQRLSSANVV SYLLNPSYLD CLPRVELSYQ SSVRSGELVD bmy_02399T0/1-709 LGPSPSGPLN VQRLSNANVV SYLLSPSYLD CLPRVELSYQ SSVGSGELVD BACU001100/1-677 LGPSPSGPLN VQRLSNANVV SYLLNPSYLD CLPRVELSYQ SSVGSGELVD 251 300 ENSP00000356156/1-713 FQTLTPESSC LREDHCHPQP LSAELIPASW QGCPPLSTEG LPEIHHLRMK ENSBTAP00000017382/1-698 FQALSPESGC LDEASSYPQP LNAEMAPASW QGCPPLSREG LPEIHHLRMK ENSTTRP00000011493/1-531 FQALSPESGC LDEVPSHPQP LNAEMACVSL QGCAPLSREG LPEIHHLRMK bmy_02399T0/1-709 FQALSSESGC LDEVPSHPQP LNAEXVRVSW QGCAPLSREG LPEIHHLRMK BACU001100/1-677 FQALSSESGC LDEVPSHPQP LNAEMVRVSW QGCAPLSREG LPEIHHLRMK 301 350 ENSP00000356156/1-713 RLEFLQQANK GQDLPTPDQD NGYHSLEEEH SLLRMDPKHC RDNPTQFVPA ENSBTAP00000017382/1-698 RLEFLQQASK GQALPTPDQD HGYHSLEEEH SLLRMEPKHF GDSPTQCVPA ENSTTRP00000011493/1-531 RLEFLQQASK GQALPTPDQD HGYHSLEEEH SLLRMDLKHR RDSATQCVPA bmy_02399T0/1-709 RLEFLQQASK GQALPTPDQD HGYHSLEEEH SLLRMDLKHR RDSATQCVPA BACU001100/1-677 RLEFLQQASK GQALPTPDQD HGYHSLEEEH SLLRMDLRHR RDSATQCVPA 351 400 ENSP00000356156/1-713 AGDIPGNTQE STEEKIELLT TEVPLALEEE SPSEGCPSSE IPMEKEPGEG ENSBTAP00000017382/1-698 AGAVPGTAQE PTEEKTELLI REVPFGLERQ GPSGGILSCE --TGQELGED ENSTTRP00000011493/1-531 AGAVPGTAQE PTEEKVELLT TEVPLALERQ GTSEGCLSCE VPTEQEPGED bmy_02399T0/1-709 AGAVPGTAQE PTEEKIELLT KEVPLALERQ GTSEGCLSCE VPTEQEPGED BACU001100/1-677 AGAVPGTAQE PTEEKIELLT KEVPLALERQ GTSEGCLSCE VPTEQEPGED 401 450 ENSP00000356156/1-713 RISVVDYSYL EGDLPISARP ACSNKLIDYI LGGASSDLET SSDPEGEDWD ENSBTAP00000017382/1-698 QISVVDSSDI DDDLPISARP ACSNKLIDYI LGGAASDLET SSDSEDEDWD ENSTTRP00000011493/1-531 QISVIDSSDI DDDLPISARP ACSNKLIDYI LGGAACDLET SSDSEGEDWD bmy_02399T0/1-709 QISVVDSSDI DDDLPTSARP ACSNKLIDYI LGGAASDLET SSDSEGEDWD BACU001100/1-677 QVSVVDSSDI DDDLPTSARP ACSNKLIDYI LGGAASDLET SSDSEGEDWD 451 500 ENSP00000356156/1-713 EEAEDDGFDS DSSLSDSDLE QDPEGLHLWN SFCSVDPYNP QNFTATIQTA ENSBTAP00000017382/1-698 EDVEDDGFDS DSSFSESDLE QDSEGLHLWN SFYSVDPYNP QNFTATIQTA ENSTTRP00000011493/1-531 DDAEDDGFDS DSSLSESDLE QDSEGLHLWN SFYSVDPYNP QNFTATIQTA bmy_02399T0/1-709 EDAEDDGFDS DSSLSESDLE QDSEGLHLWN SFYSVDPYNP QNFTATIQTS BACU001100/1-677 EDAEDDGFDS DSSLSESDLE QDSEGLHLWN SFYSVDPYNP QNFTATIQTA 501 550 ENSP00000356156/1-713 ARIVPEEPSD SEKDLSGKSD LENSSQSGSL PETPEHSSGE EDDWESSADE ENSBTAP00000017382/1-698 ARILPGNPSD SEKDLSDKSD LGNSPQTESL PEFPDHNSGD DDDWESSADE ENSTTRP00000011493/1-531 AKILPRDPSD SETDLSEKSN LENPPWTASL PESPDHNSGE EDDWESSADE bmy_02399T0/1-709 AKILPRDPSG SETDLSDKSN LENPPRTASL PESPDRNSGE EDDWESSADE BACU001100/1-677 AKILPRDPSG SETDLSDKSN LENPPRTASL PESPDRNSGE EDDWESSADE 551 600 ENSP00000356156/1-713 AESLKLWNSF CNSDDPYNPL NFKAPFQTSG ENEKGCRDSK TPSESIVAIS ENSBTAP00000017382/1-698 AESLKLWNSF CNSDDPYNLL NFKAPFQT-G KNWKSYLDSE RPSEP---IS ENSTTRP00000011493/1-531 AESLKLWNSF CNSDDPYNLL NFKAPFQTSG KNWKGCRASE RPSESIVAIS bmy_02399T0/1-709 AESLKLWNSF CNSDDPYNLL NFKAPFQTSG KNWKGCRDSE RPSESIVAIS BACU001100/1-677 AESLKLWNSF CNSDDPYNLL NFKAPFQTSG KNWESCRDSE RPSESIVAIS 601 650 ENSP00000356156/1-713 ECHTLLSCKV QLLGSQESEC PDSVQRDVLS GGRHTHVKRK KVTFLEEVTE ENSBTAP00000017382/1-698 ECHTLLSCKG QLLGSPESKC PDLVRGVVLS GETHTHIRRK KVTFLEEVTE ENSTTRP00000011493/1-531 ECHSLLSCKV QLSGSRKSEC PDLVQGGVLS GARHTHIQRK KVTFLEEVTE bmy_02399T0/1-709 ECHTLLSCKV QLSGSRESEC PDLVQGGVLS GERHTHIQRK KVTFLEEVTE BACU001100/1-677 ECHTLLSC-- ---------- ---------- ---------- KVTFLEEVTE 651 700 ENSP00000356156/1-713 YYISGDEDRK GPWEEFARDG CRFQKRIQET EDAIGYCLTF EHRERMFNRL ENSBTAP00000017382/1-698 YYISGDEDRK GPWEEFARDG CRFQKRIQET EEAIGYCLTF EHREKMFNRL ENSTTRP00000011493/1-531 YYISGDEDRK GPWEEFARDG CRFQKRIQET EDAIGYCLTF EHREKMFNRL bmy_02399T0/1-709 YYISGDEDRK GPWEEFARDG CRFQKRIQET EDAIGYCLTF EHREKMFNRL BACU001100/1-677 YYISGDEDRK GPWEEFARDG CRFQKRIQET EDAIGYCLTF EHREKMFNRL 701 750 ENSP00000356156/1-713 QGTCFKGLNV LKQC ENSBTAP00000017382/1-698 QQTCFKGLNV FEQC ENSTTRP00000011493/1-531 QEMCFKGLNV FEQC bmy_02399T0/1-709 QEMCFKGLNV FEQC BACU001100/1-677 QEMCFKGLNV FEQC