KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:19 2014 Check: 00 .. Name: ENSTTRP00000014357/1-571 Len: 664 Check: 6743 Weight: 1.00 Name: bmy_16871T0/1-623 Len: 664 Check: 255 Weight: 1.00 Name: BACU016212/1-615 Len: 664 Check: 4445 Weight: 1.00 Name: ENSP00000318177/1-572 Len: 664 Check: 1959 Weight: 1.00 Name: ENSBTAP00000017383/1-572 Len: 664 Check: 4783 Weight: 1.00 // 1 50 ENSTTRP00000014357/1-571 MAELVQGQSA PVGMKAEGFV DALHRVRQIA AKIDSIPHLN NSTPLVDPSV bmy_16871T0/1-623 MAELVQGQSA PVGMKAEGFV DALHRVRQIA AKIDSIPHLN NSTPLVDPSV BACU016212/1-615 MAELVQGQSA PVGMKAEGFV DALHRVRQIA AKIDSIPHLN NSTPLVDPSV ENSP00000318177/1-572 MAELVQGQSA PVGMKAEGFV DALHRVRQIA AKIDSIPHLN NSTPLVDPSV ENSBTAP00000017383/1-572 MAELVQGQSA PVGMKAEGFV DALHRVRQIA AKIDSIPHLN NSTPLVDPSV 51 100 ENSTTRP00000014357/1-571 YGYGVQKRPL DDGVGNQLGA LVHQRAVITE EFKVPDKMVG FIIGRGGEQI bmy_16871T0/1-623 YGYGVQKRPL DDGVGNQLGA LVHQRAVITE EFKVPDKMVG FIIGRGGEQI BACU016212/1-615 YGYGVQKRPL DDGVGNQLGA LVHQRAVITE EFKVPDKMVG FIIGRGGEQI ENSP00000318177/1-572 YGYGVQKRPL DDGVGNQLGA LVHQRTVITE EFKVPDKMVG FIIGRGGEQI ENSBTAP00000017383/1-572 YGYGVQKRPL DDGVGNQLGA LVHQRAVITE EFKVPDKMVG FIIGRGGEQI 101 150 ENSTTRP00000014357/1-571 SRIQAESGCK IQIASESSGI PERP------ CVLTGTPESI XXXXXXXXXX bmy_16871T0/1-623 SRIQAESGCK IQIASESSGI PERP------ CVLTGTPESI EQAKRLLGQI BACU016212/1-615 SRIQAESGCK IQIASDGEKW KGRIVTEHCR SVLQSGHES- RQAKRLLGQI ENSP00000318177/1-572 SRIQAESGCK IQIASESSGI PERP------ CVLTGTPESI EQAKRLLGQI ENSBTAP00000017383/1-572 SRIQAESGCK IQIASESSGI PERP------ CVLTGTPESI EQAKRLLGQI 151 200 ENSTTRP00000014357/1-571 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXERAGV bmy_16871T0/1-623 VDRCRNGPGF HNDIDGNSTI QEILIPASKV GLVIGKGGET IKQLQERTGV BACU016212/1-615 VDRCRNGPGF HNDIDGNSTI QEILIPASKV GLVIGKGGET IKQLQERTGV ENSP00000318177/1-572 VDRCRNGPGF HNDIDSNSTI QEILIPASKV GLVIGRGGET IKQLQERTGV ENSBTAP00000017383/1-572 VDRCRNGPGF HNDVDGNSTV QEIPIPASKV GLVIGKGGET IKQLQERTGV 201 250 ENSTTRP00000014357/1-571 KMVMIQDGPL PTGADKPLRI TGDPFKVQQA REMVLEIIRE KDQADFRGVR bmy_16871T0/1-623 KMVMIQDGPL PTGADKPLRI TGDPFKVQ-- ---------- ---------- BACU016212/1-615 KMVMIQDGPL PTGADKPLRI TGDPFKVQQA REMVLEIIRE KDQADFRGVR ENSP00000318177/1-572 KMVMIQDGPL PTGADKPLRI TGDAFKVQQA REMVLEIIRE KDQADFRGVR ENSBTAP00000017383/1-572 KMVMIQDGPL PTGADKPLRI TGDPFKVQQA REMVLEIIRE KDQADFRGVR 251 300 ENSTTRP00000014357/1-571 GDFSSRMGGG SIEXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXDG bmy_16871T0/1-623 ---------- ---VSVPRFA VGIVIGRNGE MIKKIQNDAG VRIQFKPDDG BACU016212/1-615 GDFGSRMGGG SIEVSVPRFA VGIVIGRNGE MIKKIQNDAG VRIQFKPDDG ENSP00000318177/1-572 GDFNSRMGGG SIEVSVPRFA VGIVIGRNGE MIKKIQNDAG VRIQFKPDDG ENSBTAP00000017383/1-572 GDFSSRMGGG SIEVSVPRFA VGIVIGRNGE MIKKIQNDAG VRIQFKPDDG 301 350 ENSTTRP00000014357/1-571 ISPERAAQVM GPPERCQHAA HVINELILTA QERDGFGGLA VARGRGRGRG bmy_16871T0/1-623 ISPERAAQVM GPPERCQHAA HVINELILTA QERDGFGGLA VARGRGRGRG BACU016212/1-615 ISPERAAQVM GPPERCQHAA HVINELILTA QERDGFGGLA VARGRGRGRG ENSP00000318177/1-572 ISPERAAQVM GPPDRCQHAA HIISELILTA QERDGFGGLA AARGRGRGRG ENSBTAP00000017383/1-572 ISPERAAQVM GPPDRCQHAA HVISELILTA QERDGFGGLA VARGRGRGRG 351 400 ENSTTRP00000014357/1-571 DWSVGNPGGI QEITYTVPAD KCGLVIGKGG ENIKSINQHS GAHVELQRNP bmy_16871T0/1-623 DWSVGTPGGI QEITYTVPAD KCGLVIGKGG ENIKSINQQS GAHVELQRNP BACU016212/1-615 DWSVGTPGGI QEITYTVPAD KCGLVIGKGG ENIKSINQQS GAHVELQRNP ENSP00000318177/1-572 DWSVGAPGGV QEITYTVPAD KCGLVIGKGG ENIKSINQQS GAHVELQRNP ENSBTAP00000017383/1-572 DWSVGTPGGI QEVTYTVPAD KCGLVIGKGG ENIKSINQQS GAHVELQRNP 401 450 ENSTTRP00000014357/1-571 PPSTDPSLRM FTIRGLPQQI ELARHLIDEK VGGASLGAPR DYAQGPFSQP bmy_16871T0/1-623 PPNTDPNLRI FTIRGVPQQI ELARHLIDEK VGGASLGAPG AFGQSPFSQP BACU016212/1-615 PPNTDPNLRI FTIRGVPQQI ELARHLIDEK VGGTSLGAPG AFGQSPFSQP ENSP00000318177/1-572 PPNSDPNLRR FTIRGVPQQI EVARQLIDEK VGGTNLGAPG AFGQSPFSQP ENSBTAP00000017383/1-572 PPSTDPNLRI FTIRGLPPQI EVARHLIDEK VGGTSIGAPG PFGQSPFSQP 451 500 ENSTTRP00000014357/1-571 PAAPHQNTFP PRSSGCFPNM APKVNGSPHS TPVSGPPAFL TQGWGSSYQV bmy_16871T0/1-623 PAAPHQNTFP PRSSGCFPNI AAKVNGNPHS APVSGPPAFL TQGWGSTYQA BACU016212/1-615 PAAPHQN--- ---------- ---------- ----GPPAFL TQGWGSTYQA ENSP00000318177/1-572 PAPPHQNTFP PRSSGCFPNM AAKVNGNPHS TPVSGPPAFL TQGWGSTYQA ENSBTAP00000017383/1-572 PAAPHQNTFP PRSSGCFPNI AAKVNGNPHS APVSGPPAFL TQGWGSTYQA 501 550 ENSTTRP00000014357/1-571 WQQPTQQVPS QQSQPQSSQP DYSKAWEDYY KKQSHAAS-- ----AAPQAS bmy_16871T0/1-623 WQQPTQQVPS QQSQPQSSQP DYSKAWEDYY KKQSECVGLL NKQLPSHRAP BACU016212/1-615 WQQPTQQVPS QQSQPQSSQP DYSKAWEDYY KKQSHAAS-- ----AAPQAS ENSP00000318177/1-572 WQQPTQQVPS QQSQPQSSQP NYSKAWEDYY KKQSHAAS-- ----AAPQAS ENSBTAP00000017383/1-572 WQQPTQQVPS QQSQPQSSQP DYSKAWEDYY KKQSHAAS-- ----AAPQAS 551 600 ENSTTRP00000014357/1-571 CPPDYTMA-- GAEYYRQQVA F-GQTLGQAQ AHSQEQ---- ---------- bmy_16871T0/1-623 KTVDFRVRGP LTPFFLSRFP CVSRISASTF AALSPRVPVR GDARSSFAVL BACU016212/1-615 SPPDYTMA-- WAEYYRQQVA FYGQTLGQAQ AHSQFDLRAL VTSAPLTCHI ENSP00000318177/1-572 SPPDYTMA-- WAEYYRQQVA FYGQTLGQAQ AHSQEQ---- ---------- ENSBTAP00000017383/1-572 TPPDYTMA-- WAEYYRQQVA FYGQTLGQAQ APSQEQ---- ---------- 601 650 ENSTTRP00000014357/1-571 ---------- ---------- ---------- ---------- ---------- bmy_16871T0/1-623 HPSSXFSSGL QRARKGMAPA LRDSPGLGRP LENRLVRTQT SREPFPDCLA BACU016212/1-615 CSSLDVGVTP RSQPPGSLRR GAAIPSGAGR FTEGAQRGSP SPFHAPPHTC ENSP00000318177/1-572 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017383/1-572 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000014357/1-571 ---------- ---- bmy_16871T0/1-623 VLPLPGSFWP FQDR BACU016212/1-615 A--------- ---- ENSP00000318177/1-572 ---------- ---- ENSBTAP00000017383/1-572 ---------- ----