KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:20 2014 Check: 00 .. Name: ENSP00000265909/1-992 Len: 1107 Check: 8195 Weight: 1.00 Name: ENSBTAP00000017386/1-1000 Len: 1107 Check: 9110 Weight: 1.00 Name: bmy_15864T0/1-983 Len: 1107 Check: 1952 Weight: 1.00 Name: BACU010158/1-990 Len: 1107 Check: 7455 Weight: 1.00 Name: ENSTTRP00000010451/1-989 Len: 1107 Check: 752 Weight: 1.00 // 1 50 ENSP00000265909/1-992 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017386/1-1000 ---------- ---------- ---------- ---------- ---------- bmy_15864T0/1-983 RPQSFPRGLR PGRRGLRRGR AAEPPLSPGP ACRTSGPAAR LSCPRRSRRP BACU010158/1-990 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010451/1-989 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000265909/1-992 ---------- ---------- MKTETVPPFQ ETPAGSSCHL NNLLSSRKLM ENSBTAP00000017386/1-1000 ---------- ---------- MKTETEILAP ERPAGPG--V SHLLSSRKLV bmy_15864T0/1-983 IAGSDMEEGG AGLGSPLPPA MKAETATAAQ ELPAGPS--L SHLLSSRKLV BACU010158/1-990 ---------- ---------- MKAETATAAQ EPPAGPS--L SHLLSSQKLV ENSTTRP00000010451/1-989 ---------- ---------- MKAETATAAQ EPPAGPS--V SHLLSSRKLV 101 150 ENSP00000265909/1-992 AVGVLLGWLL VIHLLVNVWL LCLLSALLVV LGGWLGSSLA GVASGRLHLE ENSBTAP00000017386/1-1000 ALGAVLGWLL VIHLLVNVWL LCLLSALLLV LGGWLGSDAI VGASGRLHLE bmy_15864T0/1-983 ALGAVLGWLL VIHLLVNVWL LCLLSALLLV LGGWLGSDAI VGPSGRLHLE BACU010158/1-990 ALGAVLGWLL VIHLLVNVWL LCFLSALLLV LGGWLGSDAI VGPSGRLHLE ENSTTRP00000010451/1-989 ALGAVLGWLL VIHLLVNVWL LCLLSALLLV LGGWLGADAI VGPSGRLHLE 151 200 ENSP00000265909/1-992 RFIPLATCPP CPEAERQLER EINRTIQMII RDFVLSWYRS VSQEPAFEEE ENSBTAP00000017386/1-1000 RFIPMAVCPP NPEAERQLEL EIDRTIRMIM RDFVSSWYRT VSQEPAFEEE bmy_15864T0/1-983 RFIPMAVCPP NPEAERQLEQ EIDRTIRMVM RDFVSSWYRT VSQEPAFEEE BACU010158/1-990 RFIPMAVCPP NPEAERQLEQ EIDRTIRMVM RDFVSSWYRT VSQEPAFEEE ENSTTRP00000010451/1-989 RFIPMAVCPP NPEAERQLEQ EIDRTIRMVM RDFVSSWYRT VSQEPAFEEE 201 250 ENSP00000265909/1-992 MEAAMKGLVQ ELRRRMSVMD SHAVAQSVLT LCGCHLQSYI QAKEATAGK- ENSBTAP00000017386/1-1000 MEAAMRGLVQ ELRRRMARVD SHALAQRVLT LCGCHLQSYI QAKEAT-GKQ bmy_15864T0/1-983 MEAAMRGLVQ ELRRRMARVD SHALAQRVLT LCGCHLQSYL QAKEATSGKQ BACU010158/1-990 MEAAMRGLVQ ELRRRMARVD RHALAQRVLT LCGCHLQSYL QAKEATAGKQ ENSTTRP00000010451/1-989 MQAAMRGLVQ ELRRRMARVD SHALAQG-LT LCGCHLQSYL QAKEATTGKQ 251 300 ENSP00000265909/1-992 NGPVEPSHLW EAYCRATAPH PAVHSPSAEV TYTRGVVNLL LQGLVPKPHL ENSBTAP00000017386/1-1000 SGPGEPSQLW EAYCRASAPH PAVQSPSAEV TYTRGIVNVL LQGLVPKPHL bmy_15864T0/1-983 SGTDEPSQLW EAYCQATAPH PAVQSPRAEV AYTRGIVNVL LQGLVPKPHL BACU010158/1-990 SGTGEPSQLW EAYCQATAPH PAVQSPRAEV AYTRGIVNVL LRGLVPKPHL ENSTTRP00000010451/1-989 SGTAEPSQLW EAYCQATAPH PAVQSPRTEV AYTRGIVNVL LQGLVPKPHL 301 350 ENSP00000265909/1-992 ETRTGRHVVV ELITCNVILP LISRLSDPDW IHLVLVGIFS KAR-DPAP-- ENSBTAP00000017386/1-1000 ETRTGRHIVV ELITCNVILP LISKLSDPDW IHLVLVGIFS KARTNPAGVA bmy_15864T0/1-983 ETRTGRHVVV ELITCNVILP LISKLSDPDW IHLVLVGIFS KXRTGPAGVG BACU010158/1-990 ETRTGRHVVV ELITCNVILP LIGKLSDPDW IHLVLVGIFS KTRTGPAAVG ENSTTRP00000010451/1-989 ETRTGRHVVV ELITCNVMLP LISKLSDPDW IHLVLVGIFS KTRTGPAGVG 351 400 ENSP00000265909/1-992 ---CPASAPE QPSVPTSLPL IAEVEQLPEG RASPVAAPVF LSYSEPEGSA ENSBTAP00000017386/1-1000 NPLCPASALE QPSVPTSLPL IVEVQGLAEA PS-PAAAPVL LSCSEPDGPS bmy_15864T0/1-983 KPLCPASALE QPSVPTSLPL IVEVQSLADA RA-PSPAPVL LDCSEP---S BACU010158/1-990 KPLCPASALE QPSVPTSLPL IVEVQSLADA RA-PSPAPVL LDCSEP---S ENSTTRP00000010451/1-989 KPLCPASALE QPSVPTSLPL IVEVQSLADA RA-PSPAPVL LNYSEP---S 401 450 ENSP00000265909/1-992 GPSPEVEEGH EAVEGDLGGM CEERKVGNNS SHFLQPNVRG PLFLCEDSEL ENSBTAP00000017386/1-1000 HPSPDIEEGH EALEGDLGGV LEERKVENSS SHFLQ----- PLFLSEDAEL bmy_15864T0/1-983 HPSPEVEEGH EALEGDLGGV LEEREVGNNS SHFLQ----- PLFLSEDAEL BACU010158/1-990 HPSPEVEEGH EALEGDLGGV LEEREVGNNS SHFLQ----- PLFLSEDAEL ENSTTRP00000010451/1-989 HPSPEVEEGH EALEGDLGGV LEEREVGNNS SHFLQ----- PLFLSEDAEL 451 500 ENSP00000265909/1-992 ESPLSELGKE TIMLMTPGSF LSDRIQDALC ALESSQALEP KDGEASE--- ENSBTAP00000017386/1-1000 ESPLSELSKE TIMLMTPGPF LSASIQDALC ALGGSQPLEP KDGKGPEGIE bmy_15864T0/1-983 ESPLSELGKE AIMLMNPGNF LSARIQDSLC ALGGSQXLES KDDEGSEGIE BACU010158/1-990 ESPLSELGKE AIMLMNPGNF LSARIQDSLC ALGGSQSLES KDDEGSEGIE ENSTTRP00000010451/1-989 ESPLSELGKE TIMLVNPGTF LSARIQDSLC ALGGSQALES KDEEGSEGIE 501 550 ENSP00000265909/1-992 GAEAEEGPGT ETETGLPVST LNSCPEIHID TADKEIEQGD VTASVTALLE ENSBTAP00000017386/1-1000 GAEAEEGPGT ETEPGLLASM LNSCPEIQID TADKEGEQGN DA-CLTTLLP bmy_15864T0/1-983 GAEAEEGPGT ETETGLLVSM LNSCPEIHID TADKEVEQGD VT-SLTTLLA BACU010158/1-990 GAEAEEGPGT ETETGLLVSM LNSCPEIHID TADKEVEQGD VT-SLTTLLA ENSTTRP00000010451/1-989 GAEAEEGPGT ETETGLLVSM LNSCPEIQID TADKDVEQGD VT-SLTTLLA 551 600 ENSP00000265909/1-992 GPEKTCPSRP SCLEKDLTND VSSLDPTLPP VLLSSSPPGP LSSATFSFEP ENSBTAP00000017386/1-1000 SPERICPPRP SCLEKDLTNG GSSLDSSLPQ VLLSSSPPGP LSSATFNFES bmy_15864T0/1-983 SPERMCPPRP SCLEKDLTNG VSSLDPGLPQ VLLSSSPPGP LSSATFSFEP BACU010158/1-990 SPERMCPPRP SCLEKDLTNG VSSLDPGLPQ VLLSSSPPGP LSSATFSFEP ENSTTRP00000010451/1-989 SPERMCPPRP SCLEKDLTNG VSSLDPSLPQ VLLSSSPPGP QSSATFSFEP 601 650 ENSP00000265909/1-992 LSSPDGPVII QNLRITGTIT AREHSGTGFH PYTLYTVKYE TALDGENSSG ENSBTAP00000017386/1-1000 LGSPDGPVVI QNLRITGTIT AREHSGTGFH PYTLYTVKYE TALDGESSGG bmy_15864T0/1-983 LSSPDGPVVI QNLRITGTIT AREHSGTGFH PYTLYTVKYE TALDGENSSG BACU010158/1-990 LSSPDGPVVI QNLRITGTIT AREHSGTGFH PYTLYTVKYE TALDSENSSG ENSTTRP00000010451/1-989 LSSPDGPVII QNLRITGTIT AREHSGTGFH PYTLYTVKYE TALDCESSSG 651 700 ENSP00000265909/1-992 LQQLAYHTVN RRYREFLNLQ TRLEEKPDLR KFIK------ ---------- ENSBTAP00000017386/1-1000 LQHVAYHTVN RRYREFLNLQ TRLEEKSDLR KFIK------ ---------- bmy_15864T0/1-983 LXQLAYHTVN RRYREFLNLQ TRLEEKSDLR KFIKSQELPQ PQNACLLFTS BACU010158/1-990 LQQLAYHTVN RRYREFLNLQ TRLEEKSDLR KFIK------ ---------- ENSTTRP00000010451/1-989 LQQLAYHTVN RRYREFLNLQ TRLEEKSDLR KFIK------ ---------- 701 750 ENSP00000265909/1-992 ---------- -NVKGPKKLF PDLPLGNMDS DRVEARKSLL ESFLKQLCAI ENSBTAP00000017386/1-1000 ---------- -NVKGPKKLF PDLPFGNMDS DRVEARKSLL ESFLKQLCAI bmy_15864T0/1-983 SHPDLRGWRP VDVKGPKKLF PDLPFGNMDS DRVEARKSLL ESFLKQLCAI BACU010158/1-990 ---------- -NVKGPKKLF PDLPFGNMDS DRVEARKSLL ESFLKQLCAI ENSTTRP00000010451/1-989 ---------- -NVKGPKKLF PDLPFGNMDS DRVEARKSLL ESFLKQLCAI 751 800 ENSP00000265909/1-992 PEIANSEEVQ EFLALNTDAR IAFVKKPFMV SRIDKMVVSA IVDTLKTAFP ENSBTAP00000017386/1-1000 PEIANSEEMQ EFLALNTDAR IAFVKKPFVV SRIDKMVVSA IVDTLKTAFP bmy_15864T0/1-983 PEIANSEEMQ EFLALNTDAR IAFVKKPFVV SRIDKVVVSA IVDTLKTAFP BACU010158/1-990 PEVANSEEVQ EFLALNTDAR IAFVKKPFMV SRIDKVVVSA IVDTLKTAFP ENSTTRP00000010451/1-989 PEIANSEEMQ EFLALNTDAR IAFVKKPFMV SRIDKVVVSA IVDTLKTAFP 801 850 ENSP00000265909/1-992 RSEPQSPTEE LSEAETESKP QTEGKKASKS RLRFSSSKIS PALSVTEAQD ENSBTAP00000017386/1-1000 RSEPQSPTEE LSEAETENKP QTEGKKASKS RLRFSSSKIA PALNITEAHE bmy_15864T0/1-983 RSEPQSPTEE LSEAETESKP QPEGKKTTKS RLRFSSSKIA PALNITEAHE BACU010158/1-990 RSEPQSPTEE LSEAETENKP QPEGKKATKS RLRFSSSKIA PALNITEAHE ENSTTRP00000010451/1-989 RSEPQSPTEE LSEAETESKP QPEGKKATKS RLRFSSSKIA PALNITETHE 851 900 ENSP00000265909/1-992 KILYCLQEGN VESETLSMSA MESFIEKQTK LLEMQPTKAP EKDPEQPPKG ENSBTAP00000017386/1-1000 KVLYCLQDSG VESETLSVSG MESFIEKQAK LLEVQPADAP GRDSEQTAEG bmy_15864T0/1-983 KILYCLREGS VESEILSMSG MESFIEKQTK LLETQPAEAP GKDSXQTSKG BACU010158/1-990 KILYCLREGS VESETLSMSG VESFIEKQTK LLETQPAETP GKGSEHISEG ENSTTRP00000010451/1-989 KILYCLREGS VESEILSMSG MESFIEKQTK LLETQPAEAP GKDSEQISKG 901 950 ENSP00000265909/1-992 RVDSCVSDAA VPAQDPSNSD PGTETELADT ALDLLLLLLT EQWKWLCTEN ENSBTAP00000017386/1-1000 CVDGRVSDAA APAQGLSSSD PGTETELADT ALDLLVLLLM EQWRWLCTES bmy_15864T0/1-983 CVDDCMSDAA VPAQDLSNSD PGTETELADT ALDLLLLLLM EQWSWLCTEN BACU010158/1-990 CVDDCVSGAA VPARDLSNSD PGTETELADT ALDLLLLLLM EQWSWLCTEN ENSTTRP00000010451/1-989 CVDDCVSGAA MPAQDLSNSD PGTETELADT ALDLLLLLLM EQWRWLCTEN 951 1000 ENSP00000265909/1-992 MQKFLRLIFG TLVQRWLEVQ VANLTSPQRW VQYLLLLQES IWPGGVLPKF ENSBTAP00000017386/1-1000 VQKVLHLVFG TLIQRWLEVQ VAHLTCPQRW VQYLRLLQES IWPGGALPKC bmy_15864T0/1-983 VQKVIHLIFG TLIQR---LT FAHL--PPKW ---------- --------EH BACU010158/1-990 VQKVIHLIFG TLIQRWLEVQ VATLTCPQRW VQYLRLLQES IWPGRLLPEC ENSTTRP00000010451/1-989 VQKVIHLIFG TLIQRWLEVQ VATLTCPQRW VQYLRLLQES IWPGGLLPEY 1001 1050 ENSP00000265909/1-992 PRPVRTQEQK LAAEKQALQS LMGVLPDLVV EILGVNKCRL SWGLVLESLQ ENSBTAP00000017386/1-1000 PRPVRTPEQK AAAEKQALQS LMGVLPDVIV EILGENKCRL SWSLVLESLQ bmy_15864T0/1-983 PK-------- ----RASVSS LT---PHLLK SFT------- ---------- BACU010158/1-990 PRPARTQAQK TAAEKQALQS LMGVLPDIVV GILGVNKCRL SWSLVLESLQ ENSTTRP00000010451/1-989 PRPVRTQEQK AAAEKQALQS LMGVLPDIVV EILGVNKCRL SWSLVLESLR 1051 1100 ENSP00000265909/1-992 QPLINRHLIY CLGDIILEFL DLSASVEESA ATTSASDTPG -NSKRMGVSS ENSBTAP00000017386/1-1000 QPLINRHLIY CLWDIILELL ELSASAEESA VTSSTADTPG RRASPLSQRP bmy_15864T0/1-983 ---------- ---------- ---------- ---------- ---------- BACU010158/1-990 QPLINRHLIY CLWDIILEFL DLSASAEESA VTSSATDTPG -SPKKMGISP ENSTTRP00000010451/1-989 QPLINRHLIY WLWDIILEFL DLSGSAEESA ITSSATDTPG -SPKKMGISP 1101 1150 ENSP00000265909/1-992 ------- ENSBTAP00000017386/1-1000 LSRFFEG bmy_15864T0/1-983 ------- BACU010158/1-990 ------- ENSTTRP00000010451/1-989 -------