KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:01:21 2014 Check: 00 .. Name: ENSTTRP00000011528/1-1634 Len: 1645 Check: 3754 Weight: 1.00 Name: ENSBTAP00000017388/1-1644 Len: 1645 Check: 5117 Weight: 1.00 Name: bmy_02398T0/1-1550 Len: 1645 Check: 9540 Weight: 1.00 Name: BACU001101/1-1634 Len: 1645 Check: 5962 Weight: 1.00 // 1 50 ENSTTRP00000011528/1-1634 ---------- -MSSTQGSGD HWKSLESVGI SRKELAMAEA LQMEYDALSR ENSBTAP00000017388/1-1644 TSSSALSPVL TMSSTQGSGE HWKSLESVGI SRKELAMAEA LQMEYDALSR bmy_02398T0/1-1550 ---------- -MSSTQGSGE HWKSLESVGI SRKELAMAEA LQMEYDALSR BACU001101/1-1634 ---------- -MSSTQGSGE HWKSLESVGI SRKELAMAEA LQMEYDALSR 51 100 ENSTTRP00000011528/1-1634 LRHDKEESRA KQSTDPSLIS WDEPVLDFYS KPAGRRKDLK LLRGLSGSDP ENSBTAP00000017388/1-1644 LRHDKEESRA KQNADPSLIG WDEPVLDFYS KPAGRRKDLK LLRGLSGSDP bmy_02398T0/1-1550 LRHDKEESRA KQNTDPSLIS WDEPVLDFYS KPAGRRKDLK LLRGLSGSDP BACU001101/1-1634 LRHDKEESRA KQNTDPSLIS WDEPVLDFYS KPAGRRKDLK LLRGLSGSDP 101 150 ENSTTRP00000011528/1-1634 TLNYNSLSPQ EGLPNHSTSQ GSQPGPDPWP KASLAGDYLY IFDGSDGGLS ENSBTAP00000017388/1-1644 TLNYNSVSPQ EGLPNHSTSR GSQPGPDPWP KGSLAEDYLY IFDGSDGGLS bmy_02398T0/1-1550 TLNYNSLSPQ EGLPNHSTSQ GSQPGPDPWP KGSLAGDYLY IFDGSDRGLS BACU001101/1-1634 TLNYNSLSPQ EGLPNHSTSQ GSQPGPDPWP KGSLAGDYLY IFDGSDGGLS 151 200 ENSTTRP00000011528/1-1634 LSPGLGDTDD SLKKLSPPPL PPRVCIWDTP PLPPRKGSPS SSKISRPNDI ENSBTAP00000017388/1-1644 LSPGPRHRED SSKKLSPPPL PPRVSIWDTP PLPPRKGSPS SSKVSQPSDI bmy_02398T0/1-1550 LSPGPGDTDD SFKKLSPPPL PPRVSIWDTP PLPPRKGSPS SSKISQPNDI BACU001101/1-1634 LSSGPGDTDD SFKKLSPPPL PPRVSIWDTP PLPPRKGSPS SSKISQPNDI 201 250 ENSTTRP00000011528/1-1634 NTFSLVEQPP GKLLGHQLLE EEEELGGGGP GRLLGSMDYD GINDAITRLN ENSBTAP00000017388/1-1644 NTFSSVEQPP GKLLGPGILE EEEELGGGSP GRPLGSVDYD GINDAITRLN bmy_02398T0/1-1550 NTFSLVEQPP GKLLGHRLLE EEEELGNGGP GRLLGSMDYD GINDAITRLN BACU001101/1-1634 NTFSLVEQPP GKLLGHRLLE EEEELGSGGP GRLLGSMDYD GINDAITRLN 251 300 ENSTTRP00000011528/1-1634 LKSTYDAEML RDATRGWKEG RGLLNFGKDT PGKPVARSKT MPPQVPPRTY ENSBTAP00000017388/1-1644 LKSTYDAEML RDATRGWKEG RGPLDFAKDT PGKPVARSKT MPPQVPPRTY bmy_02398T0/1-1550 LKSTYDAEML RDATRGWKEG RGLLNFGKDT PGKPVARSKT MPPQVPPRTY BACU001101/1-1634 LKSTYDAEML QDATRGWKEG RGLLNFGKDT PGKPVARSKT MPPQVPPRTY 301 350 ENSTTRP00000011528/1-1634 TSRYANRKNG TSGKNLQISA APVGSRPHAI ANGHELFEVS EERDEEVAAF ENSBTAP00000017388/1-1644 ASRCANRKNA TPGKNRRISA APVGSRPHTV ANGHELFEVS EERDEEVAAF bmy_02398T0/1-1550 TSRYANRKNG TPGKNLQISA APVGSQPHAV ANGHELFEVS EERDEEIAAF BACU001101/1-1634 TSRYANRKNG TPGKNLQISA APVCSRPHAV ANGHELFEVS EERDEEIAAF 351 400 ENSTTRP00000011528/1-1634 CHMLDILRSG SDVQDYSLTG YVWSTVTPSP EHLGDEVNLK VTVLCDSLRE ENSBTAP00000017388/1-1644 CHMLDVLRSG SDVQDYALTG YVWSAVTPSP EHLGDEVNLK VTVLCDSLRE bmy_02398T0/1-1550 CHMLDILRSG SDVQDYSLTG YVWSTVTPSP EHLGDEVNLK VTVLCDSLRE BACU001101/1-1634 CHMLDILRSG SDVQDYSLTG YVWSTVTPSP EHLGDEVNLK VTVLCDSLRE 401 450 ENSTTRP00000011528/1-1634 PLTFTCNCSS TVDLLIYQTL CYTHDELRGV DVGDFVLKPC GLEEFLQXXX ENSBTAP00000017388/1-1644 PLTFTCNCSS TVDLLIYQTL CYTRDELRDV DVGDFVLKPC GLEEFLQNKH bmy_02398T0/1-1550 PLTFTCNCSS TVDLLIYQTL CYTHDELRGV DVGDFVLKPC GLEEFLQNKH BACU001101/1-1634 PLTFTCNCSS TVDLLIYQTL CYTHDELRGV DVGDFVLKPC GLEEFLQNKH 451 500 ENSTTRP00000011528/1-1634 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000017388/1-1644 ALGSHEYIQY CRKFGIDIRL QLMEQKAVRG DLARTVNDDQ SPSTLNYLVH bmy_02398T0/1-1550 ALGSHEYIQY CRKFDIDIRL QLMEQKAVRS DLARTVNDDQ SPSTLNYLIH BACU001101/1-1634 ALGSHEYIQY CRKFDIDIRL QLMEQKAVRG DLARTVNDDQ SPSTLNYLIH 501 550 ENSTTRP00000011528/1-1634 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXGDFPLKA DRVVQSVKAI ENSBTAP00000017388/1-1644 LQERPVKQTI SRQALSLLFD TYHNEVDAFL LADGDFPLKA DRVVQSVKAI bmy_02398T0/1-1550 LQERPVKQTI SRQALSLLFD TYHNEVDAFL LADGDFPLKA DRVVQSVKAI BACU001101/1-1634 LQERPVKQTI SRQALSLLFD TYHNEVDAFL LADGDFPLKA DRVVQSVKAI 551 600 ENSTTRP00000011528/1-1634 CNALAAVETP EITNALNQLP PCPSRMKPKI QKDPTVLAVR ENRXXXXXXX ENSBTAP00000017388/1-1644 CNALAAVETP EITSALNQLP PCPSRVKPKI QKDPTVLAMK ENREKVVEAL bmy_02398T0/1-1550 CNALAAVETP EITSALNQLP PCPSRMKPKI QKDPTVLAVR ENREKVVEAL BACU001101/1-1634 CNALAAVETP EITSALNQLP PCPSRMKPKI QKDPTVLAVR ENREKVVEAL 601 650 ENSTTRP00000011528/1-1634 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000017388/1-1644 TAAILDLVEL YCNTFNADFQ PAVPGSRKHT LVQEACHLSG PLAFTVYATH bmy_02398T0/1-1550 TAAILDLVEL YCNTFNADFQ TAVHGSRKHD LVQEACHFLG SLAFTVYATH BACU001101/1-1634 TAAILDLVEL YCNTFNADFQ TAVHGSHKHD LVQEACHFFG SLAFTVYATH 651 700 ENSTTRP00000011528/1-1634 XXXXXXXXXY EEFYLSCSLS HGGKELCSPL RTRRVHFSKY LFHLIIWDQQ ENSBTAP00000017388/1-1644 RIPITWATSY EEFYLSCSLS HGGKELCSPL QTRRVHFSKY LFHLVIWDQQ bmy_02398T0/1-1550 RIPIMWAT-- ---------- ---------- ---------- ---------R BACU001101/1-1634 RIPIMWATSY EEFYLSCSLS HGGKELCSPQ RTRRVHFSKY LFHLIIWDQQ 701 750 ENSTTRP00000011528/1-1634 ICFPVQVNRL PRETLLCATL YALPIPPPGS SSESNKQRRV PEALGWVTAP ENSBTAP00000017388/1-1644 ICFPVQLNRL PRETLLCATL YALPVPPPGS SSEANKQRRV PEALGWVTAP bmy_02398T0/1-1550 ICFPVQVNRL PRETLLCATL YALPIPPPGS SSESNKQRRV PEALGWVTAP BACU001101/1-1634 ICFPVQVNRL PRETLLCATL YALPIPPPGS SSESNKQRRV PEALGWVTAP 751 800 ENSTTRP00000011528/1-1634 LFNFRQVLTC GRKLLGLWPA TQESPSTRWS APNFHQPDSV ILQIDFPTSA ENSBTAP00000017388/1-1644 LFNFRQVLTC GRKLLGLWPA TQESPSARWS APNFHQPDSV ILQIDFPTSA bmy_02398T0/1-1550 LFNFRQVLTC GRKLLGLWPA TQESPSTRWS APNFHQPDSV ILQIDFPTSA BACU001101/1-1634 LFNFRQVLTC GRKLLGLWPA TQESPSTRWS APNFHQPDSV ILQIDFPTSA 801 850 ENSTTRP00000011528/1-1634 FDIKFTSPAG DKFSPRYEFG SLREEDQHVL KNIMQKESLY WLTDADKKSL ENSBTAP00000017388/1-1644 FDIKFTSPAG DKFSPRYEFG SLREEDQHVL KNIMQKESLH WLTDADKKRL bmy_02398T0/1-1550 FDIKFTSPAG DKFSPRYEFG SLREEDQHVL KNIMQKESLY WLTDADKKSL BACU001101/1-1634 FDIKFTSPAG DKFSPRYEFG SLREEDQHVL KNIMQKESLY WLTDADKKSL 851 900 ENSTTRP00000011528/1-1634 WEKRYYCHSE VSSLPLVLAS APSWEWACLP DIYALLKQWT HMNHQDALGL ENSBTAP00000017388/1-1644 WEKRYYCHAE VSALPLVLAS APSWEWACLP DTYALLAQWT PMNHQDALGL bmy_02398T0/1-1550 WEKRYYCHSE VSSLPLVLAS APSWEWACLP DIYALLKQWT HMNHQDALGL BACU001101/1-1634 WEKRYYCHSE VSSLPLVLAS APSWEWACLP DIYALLKQWT HMNHQDALGL 901 950 ENSTTRP00000011528/1-1634 LHATFPDQEV RHMAVQWIGS LSDAELLDYL PQLVQALKYE CYLDSPLVRF ENSBTAP00000017388/1-1644 LHATFPDQEV RRMAVQWIGS LSDAELLDYL PQLVQALKYE CYLDSPLVRF bmy_02398T0/1-1550 LHATFPDQEV RRMAVQWIGS LSDAELLDYL PQLVQALKYE CYLDSPLVRF BACU001101/1-1634 LHATFPDQEV RRMAVQWIGS LSDAELLDYL PQLVQALKYE CYLDSPLVRF 951 1000 ENSTTRP00000011528/1-1634 LLKRAVSDLR VTHYFFWLLK DGLKDSQFSI RYQYLLAALL CCCGKGLREE ENSBTAP00000017388/1-1644 LLKRAVSDLR VTHYFFWLLK DGLKDSQFSI RYQYLLAALL CCCGKGLREE bmy_02398T0/1-1550 LLKRAVSDLR VTHYFFWLLK DGLKDSQFSI RYQYLLAALL CCCGKGLREE BACU001101/1-1634 LLKRAVSDLR VTHYFFWLLK DGLKDSQFSI RYQYLLAALL CCCGKGLREE 1001 1050 ENSTTRP00000011528/1-1634 FNRQCWLVST LAKLAQQVRE AAPSARPGIL RTGLEEVGQF FALNGSCRLP ENSBTAP00000017388/1-1644 FNRQCWLVNT LAKLAQQVRE AAPSARQGIL RAGLEEVEQF FVLNGSCRLP bmy_02398T0/1-1550 FNRQCWLVST LAKLAQQVRE AAPSARPGIL RTGLEEVGQF FALNGSCRLP BACU001101/1-1634 FNRQCWLVST LAKLAQQVRE AAPSARPGIL RTGLEEVGQF FALNGSCRLP 1051 1100 ENSTTRP00000011528/1-1634 LSPSLLVKGI VPRDCSYFNS NAVPLKLSFQ NVDPLGENIR VIFKCGDDLR ENSBTAP00000017388/1-1644 LSPSLLVKGV VPRDCSYFNS NAVPLKLSFQ NVDPLGENIR VIFKCGDDLR bmy_02398T0/1-1550 LSPSLLVKGI VPRDCSYFNS NAVPLKLSFQ NVDPLGENIR VIFKCGDDLR BACU001101/1-1634 LSPSLLVKGI VPRDCSYFNS NAVPLKLSFQ NVDPLGENIR VIFKCGDDLR 1101 1150 ENSTTRP00000011528/1-1634 QDMLTLQMIR IMSKIWVQEG LDMRMVLFRC FSTGRGRGMV EMIPNSETLR ENSBTAP00000017388/1-1644 QDMLTLQMIR IMSKIWVQEG LDMRMVIFRC FSTGRGRGMV EMIPNSETLR bmy_02398T0/1-1550 QDMLTLQMIR IMSKIWVQEG LDMRMVIFRC FSTGRGRGMV EMIPNSETLR BACU001101/1-1634 QDMLTLQMIR IMSKIWVQEG LDMRMVIFRC FSTGRGRGMV EMIPNSETLR 1151 1200 ENSTTRP00000011528/1-1634 KIQVEHGVTG SFKDRPLADW LQKHNPGEDE YEKAVENFIY SCAGCCVATY ENSBTAP00000017388/1-1644 KIQVEHGVTG SF-DRPLADW LQKHNPGEDE YEKAVENFIY SCAGCCVATY bmy_02398T0/1-1550 KIQVEHGVTG SFKDRPLADW LQKHNPGEDE YEKAVENFIY SCAGCCVATY BACU001101/1-1634 KIQVEHGVTG SFKDRPLADW LQKHNPGEDE YEKAVENFIY SCAGCCVATY 1201 1250 ENSTTRP00000011528/1-1634 VLGICDRHND NIMLKTTGHM FHIDFGRFLG HAQMFGNIKR DRAPFVFTSD ENSBTAP00000017388/1-1644 VLGICDRHND NIMLKTTGHM FHIDFGRFLG HAQMFGNIKR DRAPFVFTSD bmy_02398T0/1-1550 VLGICDRHND NIMLKTTGHM FHIDFGRFLG HAQMFGNIKR DRAPFVFTSD BACU001101/1-1634 VLGICDRHND NIMLKTTGHM FHIDFGRFLG HAQMFGNIKR DRAPFVFTSD 1251 1300 ENSTTRP00000011528/1-1634 MAYVINGGDK PSSRFHDFVD LCCQAYNLIR KHTHLFLNLL GLMLSCGIPE ENSBTAP00000017388/1-1644 MAYVINGGDK PSSRFHDFVD LCCQAYNLIR KHTHLFLNLL GLMLSCGIPE bmy_02398T0/1-1550 MAYVINGGDK PSSRFHDFVD LCCQAYNLIR KHTHLFLNLL GLMLSCGIPE BACU001101/1-1634 MAYVINGGDK PSSRFHDFVD LCCQAYNLIR KHTHLFLNLL GLMLSCGIPE 1301 1350 ENSTTRP00000011528/1-1634 LSDLEDLKYV YDALRPQDTE ANATTYFTRL IESSLGSVAT KLNFFIHNLA ENSBTAP00000017388/1-1644 LSDLEDLKYV YDALRPQDTE ANATTYFTRL IESSLGSVAT KLNFFIHNLA bmy_02398T0/1-1550 LSDLEDLKYV YDALRPQDTE ANATTYFTRL IESSLGSVAT KLNFFIHNLA BACU001101/1-1634 LSDLEDLKYV YDALRPQDTE ANATTYFTRL IESSLGSVAT KLNFFIHNLA 1351 1400 ENSTTRP00000011528/1-1634 QMKFTGSDDR LTLSFAPRTH TLKSSGRITD VFLCRHEKIF HPNKGYIYVV ENSBTAP00000017388/1-1644 QMKFLGSDDR LTLSFAPRTH TLKSSGRISD VFLCRHEKVF HPNKGYIYVV bmy_02398T0/1-1550 QMKFTGSDDR LTLSFAPRTH TVKSSGRISD VFLCRHEKIF HPNKGYIYVV BACU001101/1-1634 QMKFTGSDDR LTLSFAPRTH TVKSSGRISD VFLCRHEKIF HPNKGYIYVV 1401 1450 ENSTTRP00000011528/1-1634 KVMRENAHEA TYIQRTFEEF QELHNKLRLL FPSSLLPXXX XXXXXXXXXX ENSBTAP00000017388/1-1644 KVMRENAHEA AYIQRTFEEF QELHNKLRLL FPSSLLPSFP SRFVIGRSRG bmy_02398T0/1-1550 KVMRENAHEA TYIQRTFEEF QELHNKLRLL FPSSLLPSFP SRFVIGRSRG BACU001101/1-1634 KVMRENAHEA TYIQRTFEEF QELHNKLRLL FPSSLLPSFP SRFVIGRSRG 1451 1500 ENSTTRP00000011528/1-1634 XXXXXXXXXX XXXXXXXXXX XXXXXXXCDL VYTFFHPLSR DEKAAGTSLA ENSBTAP00000017388/1-1644 EAGAERRREE LNGYIWHLVH AAPEVAECDL VYTFFHPLPR DEKTAGSSLA bmy_02398T0/1-1550 EAVAERRREE LNGYIWHLIH AAPEVAECDL VYTFFHPLSR DEKAAGTSLA BACU001101/1-1634 EAVAERRREE LNGYIWHLIH AAPEVAECDL VYTFFHPLSR DEKAAGTSLA 1501 1550 ENSTTRP00000011528/1-1634 PKSSXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000017388/1-1644 PKSSEGTWAR PVGRVGGEVK LSISYKNNKL FIMVMHIRGL QLLQDGNDPD bmy_02398T0/1-1550 PKSSDGTWAR PVGKVGGEVK LSISYKNNKL FIMVMHIRGL ---------- BACU001101/1-1634 PKSSDGTWAR PVGKVGGEVK LSISYKNNKL FIMVMHIRGL QLLQDGNDPD 1551 1600 ENSTTRP00000011528/1-1634 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXMLVYDGIP KGDLQQRELQ ENSBTAP00000017388/1-1644 PYVKIYLLPD PQKTTKKKTK VARKTCNPTY NEMLVYDGIP KGDLQQRELQ bmy_02398T0/1-1550 ---------- ---------- ---------- ---LVYDGIP KGDLQQRELQ BACU001101/1-1634 PYVKIYLLPD PQKTTKKKTK VARKTCNPTY NEMLVYDGIP KGDLQQRELQ 1601 1650 ENSTTRP00000011528/1-1634 LSVLSEQGFW ENVLLGEVHI RLRELDLTQE KTGWFALGSR SHETL ENSBTAP00000017388/1-1644 LSVLSEQGFW ENVLLGEVHI RLRELDLAQE KTGWFALGSR SPETL bmy_02398T0/1-1550 LSVLSEQGFW ENVLLGEVHI RLRELDLAQE KTGWFALGSR SHETL BACU001101/1-1634 LSVLSEQGFW ENVLLGEVHI RLRELDLAQE KTGWFALGSR SHETL