KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:25 2014 Check: 00 .. Name: ENSTTRP00000003802/1-554 Len: 637 Check: 2565 Weight: 1.00 Name: ENSP00000309430/1-555 Len: 637 Check: 1787 Weight: 1.00 Name: ENSBTAP00000017414/1-555 Len: 637 Check: 2401 Weight: 1.00 Name: bmy_00110T0/1-622 Len: 637 Check: 1763 Weight: 1.00 Name: BACU010505/1-555 Len: 637 Check: 2839 Weight: 1.00 // 1 50 ENSTTRP00000003802/1-554 MAAPGAAATD L--------- ---------- ---------- EVVRGKRAAL ENSP00000309430/1-555 MAAAGAAATH L--------- ---------- ---------- EVARGKRAAL ENSBTAP00000017414/1-555 MAATGAAATD L--------- ---------- ---------- EVVRGKRAAL bmy_00110T0/1-622 MAAPGAAATD LGCWGSSASG VGPAPEPTSG GASVDPPVSP EVVRGKRAAL BACU010505/1-555 MAAPGAAATD L--------- ---------- ---------- EVVRGKRAAL 51 100 ENSTTRP00000003802/1-554 FFAAVVIVLG LPLWWKTTET YRAPLPYSQI SGLNSLQLRL -VPVTVVFTQ ENSP00000309430/1-555 FFAAVAIVLG LPLWWKTTET YRASLPYSQI SGLNALQLRL MVPVTVVFTR ENSBTAP00000017414/1-555 FFATVVIVLG LPLWWKTTET YRAPLPYSQI SGLNSLKLRL MVPVTVVFTQ bmy_00110T0/1-622 FFAAVVIVLG LPLWWKTTET YRAPLPYSQI SGLNSLQLRL MVPVTVVFTQ BACU010505/1-555 FFAAVVIVLG LPLWWKTTET YRAPLPYSQI SGLNSLQLRL MVPVTVVFTQ 101 150 ENSTTRP00000003802/1-554 ESVPLDDQEK LPFTVXXXXX XXXXXKLKIK CRFQKAYRRA LGHEEEALSL ENSP00000309430/1-555 ESVPLDDQEK LPFTVVHERE IPLKYKMKIK CRFQKAYRRA LDHEEEALSS ENSBTAP00000017414/1-555 ESVPLDDQEK LPFTVVHERE IPLKYKLKIK CRFQKAYRRA LDHEEAALSL bmy_00110T0/1-622 ESVPLDDQEK LPFTVVHERE IPLKYKLKIK CRFQKAYRRA LDHEEEALSL BACU010505/1-555 ESVPLDDQEK LPFTVVHERE IPLKYKLKIK CRFQKAYRRA LDHEEEALSL 151 200 ENSTTRP00000003802/1-554 GSIQEAETMF AEPSEQAEGS LTVYVISEHS SLLPQDMMSY IGPKRMAVVR ENSP00000309430/1-555 GSVQEAEAML DEPQEQAEGS LTVYVISEHS SLLPQDMMSY IGPKRTAVVR ENSBTAP00000017414/1-555 GNIQEAEAML AEPSEQAEGS LTVYVISERC SLLPQDMMSY IGPKRMAVVR bmy_00110T0/1-622 GXIQEAETMF AEPSEQAEGS LTVYVISEHS SLLPQDMMSY IGPKRMAVVR BACU010505/1-555 GGIQEAETMF AEPSEQAEGS LTVYVISEHS SLLPQDMMSY IGPKRMAVVR 201 250 ENSTTRP00000003802/1-554 GIMHREAFNI IGHRVIQVAQ AMSLTEDVLA AALADHLPED KWSSDKRRPL ENSP00000309430/1-555 GIMHREAFNI IGRRIVQVAQ AMSLTEDVLA AALADHLPED KWSAEKRRPL ENSBTAP00000017414/1-555 GITHREAFNI IGRRIIQVVQ AMSLTEDVLA AALADHLPED KWSSDKRRPL bmy_00110T0/1-622 GIMHREAFNI IGRRVIQVAQ AMSLTEDVLA AALADHLPED KWSSDKRRPL BACU010505/1-555 GIMHREAFNI IGRRVIQVAQ AMSLTEDVLA AALADHLPED KWSSDKRRPL 251 300 ENSTTRP00000003802/1-554 KSSLG----- ---------- ---------- ---------- ---------- ENSP00000309430/1-555 KSSLG----- ---------- ---------- ---------- ---------- ENSBTAP00000017414/1-555 KSSLG----- ---------- ---------- ---------- ---------- bmy_00110T0/1-622 KSSLGRHSVF LIPVLSSLCV HDGNQPHFRG EPSSTQPGVQ AAFDPQMPLA BACU010505/1-555 KSSLG----- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000003802/1-554 --------YE ITFSLLNPDP KSHDVHWDIE GAVRRYVQPF LNALRAVGNF ENSP00000309430/1-555 --------YE ITFSLLNPDP KSHDVYWDIE GAVRRYVQPF LNALGAAGNF ENSBTAP00000017414/1-555 --------YE ITFSLLNPDP KSHDVHWDIE GAVQRYVQPF LSALSAAGNF bmy_00110T0/1-622 SLTPVFIGYE ITFSLLNPDP KSHDVHWDIE GAVQRYVQPF LNALRAVGNF BACU010505/1-555 --------YE ITFSLLNPDP KSHDVHWDIE GAVQRYVQPF LNALRAVGNF 351 400 ENSTTRP00000003802/1-554 SVDSQILYYA VLGVNPRFDP ASSSYYLAAH SLPHVINPVE SRLGSSAASL ENSP00000309430/1-555 SVDSQILYYA MLGVNPRFDS ASSSYYLDMH SLPHVINPVE SRLGSSAASL ENSBTAP00000017414/1-555 SVDSQILYYA VLGVNPRFDS ASSSYYLAAH SLPHVINPVE SRLGSSAASL bmy_00110T0/1-622 SVDSQ----- --AASPSLQA IQEKY----- --GHTCRKDN SR-RSSAASL BACU010505/1-555 SVDSQILYYA VLGVNPRFDP ASSSYYLAAH SLPHVINPVE SRLGSSAASL 401 450 ENSTTRP00000003802/1-554 YPVLNFLLYV PELAHSPLYI QDKDGAPVAT NAFHSPRWGG IMXXXXXXXX ENSP00000309430/1-555 YPVLNFLLYV PELAHSPLYI QDKDGAPVAT NAFHSPRWGG IMVYNVDSKT ENSBTAP00000017414/1-555 YPVLNFLLYV PELAHSPLYI QDKDGAPVAT NAFHSPRWGG IMVYNVDPKA bmy_00110T0/1-622 YPVLNFLLYV PELAHSPLYI QDKDGAPVAT NAFHSPRWGG IMVYNVDPKA BACU010505/1-555 YPVLNFLLYV PELAHSPLYI QDKDGAPVAT NAFHSPRWGG IMVYNVDPKA 451 500 ENSTTRP00000003802/1-554 XXXXXXXXXX XXXXXXXXXX XXXXXXLLFG IAQPQLPPKC LFSGPKSEGI ENSP00000309430/1-555 YNASVLPVRV EVDMVRVMEV FLAQLRLLFG IAQPQLPPKC LLSGPTSEGL ENSBTAP00000017414/1-555 YNGSQLPVRV EVDMMRVMEV FLAQLRLLFG IAQPQLPPKC LFFGPKSEGI bmy_00110T0/1-622 YNGSELPVRV KVDMVRVMEV FLAQLRLLFG IAQPQMPPKC LFSGSKSEGI BACU010505/1-555 YNGSELPVRV KVDMVRVMEV FLAQLRLLFG IAQPQMPPKC LFSGSKSEGI 501 550 ENSTTRP00000003802/1-554 MSWELDRLLW ARSVENLATA TTTLTSLAQL LGKISNIVIK DDVASEVYRA ENSP00000309430/1-555 MTWELDRLLW ARSVENLATA TTTLTSLAQL LGKISNIVIK DDVASEVYKA ENSBTAP00000017414/1-555 MTWELDRLLW ARSVENLATA TTTLTSLAQL LGKISNIVIK DDVASEVYRA bmy_00110T0/1-622 MSWELDRLLW ARSVENLATA TTTLTSLAQL LGKISNIVIK DDVASEVYRA BACU010505/1-555 MSWELDRLLW ARSVENLATA TTTLTSLAQL LGKISNIVIK DDVASEVYRA 551 600 ENSTTRP00000003802/1-554 VAAVQKAAEE LASGHLASAF VASQEAVTSS ERAFFDPSLL HLLYFPDDQK ENSP00000309430/1-555 VAAVQKSAEE LASGHLASAF VASQEAVTSS ELAFFDPSLL HLLYFPDDQK ENSBTAP00000017414/1-555 VAAVQKAAEE LSSGHLASAF AASQEAVTSS ERAFFDPSLL HLLYFPDDQK bmy_00110T0/1-622 VAAVQKAAEE LASGHLTSAF VASQEAVTSS ERAFFDPSLL HLLYFPDDQK BACU010505/1-555 VAAVQKAAEE LASGHLASAF VASQEAVTSS ERAFFDPSLL HLLYFPDDQK 601 650 ENSTTRP00000003802/1-554 FAIYIPLFLP MAVPILLSLF KIFLETRKSW KKPEKID ENSP00000309430/1-555 FAIYIPLFLP MAVPILLSLV KIFLETRKSW RKPEKTD ENSBTAP00000017414/1-555 FAIYIPLFLP MAVPILLSLF KIFLETRKSW KKPEKTD bmy_00110T0/1-622 FAIYIPLFLP MAVPILLSLF KIFLETRKSW KKPEKID BACU010505/1-555 FAIYIPLFLP MAVPILLSLF KIFLETRKSW KKPEKID