KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:28 2014 Check: 00 .. Name: ENSTTRP00000005320/1-638 Len: 791 Check: 4966 Weight: 1.00 Name: ENSP00000300737/1-685 Len: 791 Check: 8922 Weight: 1.00 Name: ENSBTAP00000017425/1-683 Len: 791 Check: 3541 Weight: 1.00 Name: bmy_03647T0/1-577 Len: 791 Check: 4780 Weight: 1.00 Name: BACU004952/1-791 Len: 791 Check: 419 Weight: 1.00 // 1 50 ENSTTRP00000005320/1-638 ---------- ---------- ---------- ---------- -------FCR ENSP00000300737/1-685 MDVCVRLALW LLWGLLLHQG QSLSHSHSEK ATGTSSGANS EESTAAEFCR ENSBTAP00000017425/1-683 MDVCARLALW LLWGLLLHHG QSLSQSHSEK ATG--SGANS EESTAAEFCR bmy_03647T0/1-577 ---------- ---------- ---------- ---------- ---------- BACU004952/1-791 MDVCARLALW LLWGLLLHHG QSLSQSHSEK TTGTGSGASS EESTAAEFCR 51 100 ENSTTRP00000005320/1-638 IDKPLCHSED EKLSFDAVRS IHKLMDDDAN GDVDVEESDE FLREDLNYHD ENSP00000300737/1-685 IDKPLCHSED EKLSFEAVRN IHKLMDDDAN GDVDVEESDE FLREDLNYHD ENSBTAP00000017425/1-683 IDKPLCHSED EKLSFDAVRS IHKLMDDDAN GDVDVEESDE FLREDLNYHD bmy_03647T0/1-577 ---------- ---------- ---------- ---------- ---------- BACU004952/1-791 IDKPLCHSED EKLSFDAVRS IHKLMDDDAN GDVDVEESDE FLREDLNYHD 101 150 ENSTTRP00000005320/1-638 PTVKHSTFHG EDKLISVEDL WKAWKSSEVY NWTVDEVVQW LITYVELPQY ENSP00000300737/1-685 PTVKHSTFHG EDKLISVEDL WKAWKSSEVY NWTVDEVVQW LITYVELPQY ENSBTAP00000017425/1-683 PTVKHSTFHG EDKLISVEDL WKAWKSSEVY NWTVDEVVQW LITYVELPQY bmy_03647T0/1-577 ---------- ---------- ---------- ---------- ---------- BACU004952/1-791 PTVKHSTFHG EDKLISVEDL WKAWKSSEVY NWTVDEVVQW LITYVELPQY 151 200 ENSTTRP00000005320/1-638 EETFRKLQLS GHAMPRLAI- NITMTGTVLK MTDRSHRQKL QLKALDTVLS ENSP00000300737/1-685 EETFRKLQLS GHAMPRLAVT NTTMTGTVLK MTDRSHRQKL QLKALDTVLF ENSBTAP00000017425/1-683 EETFRKLQLS GHAMPRLAVT NTTMTGTVLK MTDRSHRQKL QLKALDTVLF bmy_03647T0/1-577 ---------- ---------- ---------- ---------- ---------- BACU004952/1-791 EETFRKLQLS GHAMPRLAVT NTTMTGTVLK MTDRSHRQKL QLKALDTVLF 201 250 ENSTTRP00000005320/1-638 GPPLLTRHNH LKDFMLVVSI VIGVGGCWFA YIQNRYSKEH MKKMMKDLEG ENSP00000300737/1-685 GPPLLTRHNH LKDFMLVVSI VIGVGGCWFA YIQNRYSKEH MKKMMKDLEG ENSBTAP00000017425/1-683 GPPLLTRHNH LKDFMLVVSI VIGVGGCWFA YIQNRYSKEH MKKMMKDLEG bmy_03647T0/1-577 ---------- ----MLVVSI VIGVGGCWFA YIQNRYSKEH MKKMMKDLEG BACU004952/1-791 GPPLLTRHNH LKDFMLVVSI VIGVGGCWFA YIQNRYSKEH MKKMMKDLEG 251 300 ENSTTRP00000005320/1-638 LHRAEQSLHD LQERLHKAQE EHRTVEVEKV HLEKKLRDEI SLAKQEAQRL ENSP00000300737/1-685 LHRAEQSLHD LQERLHKAQE EHRTVEVEKV HLEKKLRDEI NLAKQEAQRL ENSBTAP00000017425/1-683 LHRAEQSLHD LQERLHKAQE EHRTVEVEKV HLEKKLRDEI NLAKQEAQRL bmy_03647T0/1-577 LHRAEQSLHD LQERLHKAQE EHRTVEVEKV HLEKKLRDEI SLAKQEAQRL BACU004952/1-791 LHRAEQSLHD LQERLHKAQE EHRTVEVEKV HLEKKLRDEI SLAKQEAQRL 301 350 ENSTTRP00000005320/1-638 KELREGTENE RSRQKYAEEE LEQVREALRK AEKELESHSS WYAPEALQKW ENSP00000300737/1-685 KELREGTENE RSRQKYAEEE LEQVREALRK AEKELESHSS WYAPEALQKW ENSBTAP00000017425/1-683 KELREGTENE RSRQKYAEEE LEQVREALRK AEKELESHSS WYAPEALQKW bmy_03647T0/1-577 KELREGTENE RSRQKYAEEE LEQVREALRK AEKELESHSS WYAPEALQKW BACU004952/1-791 KELREGTENE RSRQKYAEEE LEQVREALRK AEKELESHSS WYAPEALQKW 351 400 ENSTTRP00000005320/1-638 LQLTHEVEVQ YYNIKKQNAE KQLLVAKEGA EKIKKKRNTL FGTFHVAHSS ENSP00000300737/1-685 LQLTHEVEVQ YYNIKKQNAE KQLLVAKEGA EKIKKKRNTL FGTFHVAHSS ENSBTAP00000017425/1-683 LQLTHEVEVQ YYNIKKQNAE KQLLVAKEGA EKIKKKRNTL FGTFHVAHSS bmy_03647T0/1-577 LQLTHEVEVQ YYNIKKQNAE KQLLVAKEGA EKIKKKRNTL FGTFHVAHSS BACU004952/1-791 LQLTHEVEVQ YYNIKKQNAE KQLLVAKEGA EKIKKKRNTL FGTFHVAHSS 401 450 ENSTTRP00000005320/1-638 SLDDVDHKIL TAKQALSEVT AALRERLHRW QQIEILCGFQ IVNNPGVHSL ENSP00000300737/1-685 SLDDVDHKIL TAKQALSEVT AALRERLHRW QQIEILCGFQ IVNNPGIHSL ENSBTAP00000017425/1-683 SLDDVDHKIL TAKQALSEVT AALRERLHRW QQIEILCGFQ IVNNPGIHSL bmy_03647T0/1-577 SLDDVDHKIL TAKQALSEVT AALRERLHRW QQIEILCGFQ IVNNPGIHSL BACU004952/1-791 SLDDVDHKIL TAKQALSEVT AALRERLHRW QQIEILCGFQ IVNNPGIHSL 451 500 ENSTTRP00000005320/1-638 VAALNIDPSW MGSTRPNPAH FIMTDDVDDM DEEIVSPLSM QSPSLQSSSV ENSP00000300737/1-685 VAALNIDPSW MGSTRPNPAH FIMTDDVDDM DEEIVSPLSM QSPSLQ-SSV ENSBTAP00000017425/1-683 VAALNIDPSW MGSTRPNPTH FIMTDDVDDM DEEIVSPLSM QSPSLQ-SSV bmy_03647T0/1-577 VAALNIDPSW MGSTRPNPAH FIMTDDVDDM DEEIVSPLSM QSPSLQSSSV BACU004952/1-791 VAALNIDPSW MGSTRPNPAH FIMTDDVDDM DEEIVSPLSM QSPSLQSSSV 501 550 ENSTTRP00000005320/1-638 RQRLMEPQHG LGSQR----- ---------- ---------- ---------- ENSP00000300737/1-685 RQRLTEPQHG LGSQR----- ---------- ---------- ---------- ENSBTAP00000017425/1-683 RQRLTEPQHG LGSQR----- ---------- ---------- ---------- bmy_03647T0/1-577 RQRLTEPQHG LGSQRLVEGE AGHFLTSRVS LRRMRSLSSG QSFSSEGLGT BACU004952/1-791 RQRLTEPQHG LGSQRLVEGE AGHFLTSRVS LRRMRSLSSG QSFSSEGLGT 551 600 ENSTTRP00000005320/1-638 ---------- ---------- ---------- ---------- ---------- ENSP00000300737/1-685 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017425/1-683 ---------- ---------- ---------- ---------- ---------- bmy_03647T0/1-577 SAPSASASSC SSTTTTTATT SSTITTTTTV HIHPVYHHHS TSYFLQMEPY BACU004952/1-791 SAPSASASSC SSTTTTTATT SSTITTTTTV HIHPVYYHHS TSYFLQMKPY 601 650 ENSTTRP00000005320/1-638 ---------- ---------- DLTHSDSESS LHMSDRQRLV LKPPQMVRAA ENSP00000300737/1-685 ---------- ---------- DLTHSDSESS LHMSDRQRVA PKPPQMSRAA ENSBTAP00000017425/1-683 ---------- ---------- DLTHSDSESS LHMSDRQRLA PKPPQMIRAA bmy_03647T0/1-577 PDPPPSYSTA VMPWHSESLG DLTHSDSESS LHMSDRQRLV LKPPQMVRAA BACU004952/1-791 PDPPPSYSTA VMPWHSESLG DLTHSDSESS LHMSDRQRLV LKPPQTVHAA 651 700 ENSTTRP00000005320/1-638 DEALSAMTSN GSHRLIEGVH PASLVEKLPD SPXXXXXXXX XXXXXXXXXX ENSP00000300737/1-685 DEALNAMTSN GSHRLIEGVH PGSLVEKLPD SPALAKKALL ALNHGLDKAH ENSBTAP00000017425/1-683 DEALSAMTSN GSHRLIEGAH PGSLVEKLPD SPALAKKALL ALNHGLDKAH bmy_03647T0/1-577 DEALSAMTSN GSHRLIEGVH PFSLVEKLPD SPALAKKALL ALNHGLDKAH BACU004952/1-791 DEALSAMTSN GSHRLIEGVH PISLVEKLPD SPALAKKALL ALNHGLDKAH 701 750 ENSTTRP00000005320/1-638 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXTRI ENSP00000300737/1-685 SLMELSPSAP PGGSPHLDSS RSHSPSSPDP DTPSPVGDSR ALQASRNTRI ENSBTAP00000017425/1-683 SLMELSSPAL PSGSPHLDSS RSHSPSPPDP DTPSPAGDSR ALQASRNTRI bmy_03647T0/1-577 SLMELSSPAP PSGSPHLDSS RSHSPSSPDP DTPSPAGDSR ALQASRNTRI BACU004952/1-791 SLMELSSPAP PSGSPHLDSS RSHSPSSPDP DTPSPAGDSR ALQASRNTRI 751 800 ENSTTRP00000005320/1-638 PHLAGKKAVA EEDNGSIGEE TDSSPGRKKF PLKIFKKPLK K ENSP00000300737/1-685 PHLAGKKAVA EEDNGSIGEE TDSSPGRKKF PLKIFKKPLK K ENSBTAP00000017425/1-683 PHLAGKKAAA EEDNGSIGEE TDSSPGRKKF PLKIFKKPLK K bmy_03647T0/1-577 PHLAGKKAVA EEDNGSIGEE TDSSPGRKKF PLKIFKKPLK K BACU004952/1-791 PHLAGKKAVA EEDNGSIGEE TDSSPGRKKF PLKIFKKPLK K