KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:29 2014 Check: 00 .. Name: ENSP00000300738/1-792 Len: 801 Check: 7468 Weight: 1.00 Name: ENSBTAP00000017428/1-791 Len: 801 Check: 2882 Weight: 1.00 Name: ENSTTRP00000005323/1-791 Len: 801 Check: 3099 Weight: 1.00 Name: bmy_03646T0/1-745 Len: 801 Check: 3284 Weight: 1.00 Name: BACU004951/1-339 Len: 801 Check: 6955 Weight: 1.00 // 1 50 ENSP00000300738/1-792 MHVIKRDGRQ ERVMFDKITS RIQKLCYGLN MDFVDPAQIT MKVIQGLYSG ENSBTAP00000017428/1-791 MHVIKRDGRQ ERVMFDKITS RIQKLCYGLN MDFVDPAQIT MKVIQGLYSG ENSTTRP00000005323/1-791 MHVIKRDGRQ ERVMFDKITS RIQKLCYGLN MDFVDPAQIT MKVIQGLYSG bmy_03646T0/1-745 ---------- ---MFDKITS RIQKLCYGLN MDFVDPAQIT MKVIQGLYSG BACU004951/1-339 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000300738/1-792 VTTVELDTLA AETAATLTTK HPDYAILAAR IAVSNLHKET KKVFSDVMED ENSBTAP00000017428/1-791 VTTVELDTLA AETAATLTTK HPDYAILAAR IAVSNLHKET KKVFSDVMED ENSTTRP00000005323/1-791 VTTVELDTLA AETAATLTTK HPDYAILAAR IAVSNLHKET KKVFSDVMED bmy_03646T0/1-745 VTTVELDTLA AETAATLTTK HPDYAILAAR IAVSNLHKET KKVFSDVMED BACU004951/1-339 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000300738/1-792 LYNYINPHNG KHSPMVAKST LDIVLANKD- --------RL NSAIIYDRDF ENSBTAP00000017428/1-791 LFNYINPHNG KHSPMVAKST LDIVLANKD- --------RL NSAIIYDRDF ENSTTRP00000005323/1-791 LFNYINPHNG KHSPMVAKST VDIVLANKD- --------RL NSAIIYDRDF bmy_03646T0/1-745 LFNYINPHNG KHSPMVAKST VDIVLANKDV RMDFYSTTRL NSAIIYDRDF BACU004951/1-339 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000300738/1-792 SYNYFGFKTL ERSYLLKING KVAERPQHML MRVSVGIHKE DIDAAIETYN ENSBTAP00000017428/1-791 SYNYFGFKTL ERSYLLKING KVAERPQHML MRVSVGIHKE DIDAAIETYN ENSTTRP00000005323/1-791 SYNYFGFKTL ERSYLLKISG KVAERPQHML MRVSVGIHKE DIDAAIETYN bmy_03646T0/1-745 SYNYFGFKTL ERSYLLKISG KVAERPQHML MRVSVGIHKE DIDAAIETYN BACU004951/1-339 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000300738/1-792 LLSERWFTHA SPTLFNAGTN RPQLSSCFLL SMKDDSIEGI YDTLKQCALI ENSBTAP00000017428/1-791 LLSEKWFTHA SPTLFNAGTN RPQLSSCFLL SMKDDSIEGI YDTLKQCALI ENSTTRP00000005323/1-791 LLSEKWFTHA SPTLFNAGTN RPQLSSCFLL SMKDDSIEGI YDTLKQCALI bmy_03646T0/1-745 LLSEKWFTHA SPTLFNAGTN RPQLSRCLY- ---------- ---------- BACU004951/1-339 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000300738/1-792 SKSAGGIGVA VSCIRATGSY IAGTNGNSNG LVPMLRVYNN TARYVDQGGN ENSBTAP00000017428/1-791 SKSAGGIGVA VSCIRATGSY IAGTNGNSNG LVPMLRVYNN TARYVDQGGN ENSTTRP00000005323/1-791 SKSAGGIGVA VSCIRATGSY IAGTNGNSNG LVPMLRVYNN TARYVDQGGN bmy_03646T0/1-745 ---------- -------PQF LFQTNGNSNG LVPMLRVYNN TARYVDQGGN BACU004951/1-339 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000300738/1-792 KRPGAFAIYL EPWHLDIFEF LDLKKNTGKE EQRARDLFFA LWIPDLFMKR ENSBTAP00000017428/1-791 KRPGAFAIYL EPWHLDIFEF LDLKKNTGKE EQRARDLFFA LWIPDLFMKR ENSTTRP00000005323/1-791 KRPGAFAIYL EPWHLDIFEF LDLKKNTGKE EQRARDLFFA LWIPDLFMKR bmy_03646T0/1-745 KRPGAFAIYL EPWHLDIFEF LDLKKNTGKE EQRARDLFFA LWIPDLFMKR BACU004951/1-339 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000300738/1-792 VETNQDWSLM CPNECPGLDE VWGEEFEKLY ASYEKQGRVR KVVKAQQLWY ENSBTAP00000017428/1-791 VETNQDWSLM CPNECPGLDE VWGEEFEKLY ERYEKEGRVR KVIKAQQLWY ENSTTRP00000005323/1-791 VETNQDWSLM CPNECPGLDE VWGEEFEKLY ESYEKEGRFR KVVKAQQLWY bmy_03646T0/1-745 VETNQDWSLM CPNECPGLDE VWGEEFEKLY ESYEKESRVR KVVKAQQLWY BACU004951/1-339 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000300738/1-792 AIIESQTETG TPYMLYKDSC NRKSNQQNLG TIKCSNLCTE IVEYTSKDEV ENSBTAP00000017428/1-791 AIIESQTETG TPYMLYKDSC NRKSNQQNLG TIKCSNLCTE IVEYTSKDEV ENSTTRP00000005323/1-791 AIIESQTETG TPYMLYKDSC NRKSNQQNLG TIKCSNLCTE IVEYTSKDEV bmy_03646T0/1-745 AIIESQTETG TPYMLYKDSC NRKSNQQNLG TIKCSNLCTE IVEYTSKDEV BACU004951/1-339 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000300738/1-792 AVCNLASLAL NMYVTSEHTY DFKKLAEVTK VVVRNLNKII DINYYPVPEA ENSBTAP00000017428/1-791 AVCNLASLAL NMYVTSEHTY DFTKLAEVTK VIVRNLNKII DINYYPVPEA ENSTTRP00000005323/1-791 AVCNLASLAL NMYVTSEHTY DFMKLAEVTK VIVRNLNKII DINYYPVPEA bmy_03646T0/1-745 AVCNLASLAL NMYVTSEHTY DFMKLAEVTK VVVRNLNKII DINYYPVPEA BACU004951/1-339 ---------- -MYVTSEHTY DFMKLAEVTK VIVRNLNKII DINYYPVPEA 501 550 ENSP00000300738/1-792 CLSNKRHRPI GIGVQGLADA FILMRYPFES AEAQLLNKQI FETIYYGALE ENSBTAP00000017428/1-791 SLSNKLHRPI GIGVQGLADA FILMRYPFES PEAQLLNKQI FETIYYGALE ENSTTRP00000005323/1-791 SVSNRCHRPI GIGVQGLADA FILMRYPFES PEAQLLNKQI FETIYYGALE bmy_03646T0/1-745 SVSNRCHRPI GIGVQGLADA FILMRYPFES PEAQLLNKQI FETIYYGALE BACU004951/1-339 SVSNRCHRPI GIGVQGLADA FILMRYPFES PEAQLLNKQI FETIYYGALE 551 600 ENSP00000300738/1-792 ASCDLAKEQG PYETYEGSPV SKGILQYDMW NVTPTDLWDW KVLKEKIAKY ENSBTAP00000017428/1-791 ASCDLAKEYG PYETYEGSPV SKGILQYDMW NVTPTDLWDW NLLKEKIAKY ENSTTRP00000005323/1-791 ASCELAKEYG PYETYEGSPV SKGILQYDMW NVTPTNLWDW KLLKEKIAKY bmy_03646T0/1-745 ASCELAKEYG PYETYEGSP- ---ILQYDMW NVTPTNLWDW KLLKEKIAKY BACU004951/1-339 ASCELAKEYG PYETYEGSPV SKGILQYDMW NVTPTNLWDW KLLKEKIAKY 601 650 ENSP00000300738/1-792 GIRNSLLIAP MPTASTAQIL GNNESIEPYT SNIYTRRVLS GEFQIVNPHL ENSBTAP00000017428/1-791 GVRNSLLIAP MPTASTAQIL GNNESIEPYT SNIYTRRVLS GEFQIVNPHL ENSTTRP00000005323/1-791 GIRNSLLIAP MPTASTAQIL GNNESIEPYT SNIYTRRVLS GEFQIVNPHL bmy_03646T0/1-745 GIRNSLLIAP MPTASTAQIL GNNESIEPYT SNIYTRRVLS GEFQIVNPHL BACU004951/1-339 GIRNSLLIAP MPTASTAQIL GNNESIEPYT SNIYTRRVLS GEFQIVNPHL 651 700 ENSP00000300738/1-792 LKDLTERGLW HEEMKNQIIA CNGSIQSIPE IPDDLKQLYK TVWEISQKTV ENSBTAP00000017428/1-791 LKDLTERGLW NEEMKNQIIA CNGSIQSIPE IPDDLKQLYK TVWEISQKTV ENSTTRP00000005323/1-791 LKDLTERGLW NEEMKNQIIA CNGSIQSIPE IPEDLKQLYK TVWEISQKTI bmy_03646T0/1-745 LKDLTERGLW NEEMKNQIIA CNGSIQSIPE IPDDLKQLYK TVWEISQKTV BACU004951/1-339 LKDLTERGLW NEEMKNQIIA CNGSIQSIPE IPDDLKQLYK TVWEISQKTV 701 750 ENSP00000300738/1-792 LKMAAERGAF IDQSQSLNIH IAEPNYGKLT SMHFYGWKQG LKTGMYYLRT ENSBTAP00000017428/1-791 LKMAAERGAF IDQSQSLNIH IAEPNYGKLT SMHFYGWKQG LKTGMYYLRT ENSTTRP00000005323/1-791 LKMAAERGAF IDQSQSLNIH IAEPNYGKLT SMHFYGWKQG LKTGMYYLRT bmy_03646T0/1-745 LKMAAERGAF IDQSQSLNIH IAEPNYGKLT SMHFYGWKQG LKTGMYYLRT BACU004951/1-339 LKMAAERGAF IDQSQSLNIH IAEPNYGKLT SMHFYGWKQG LKTGMYYLRT 751 800 ENSP00000300738/1-792 RPAANPIQFT LNKEKLKDKE KVSKEEEEKE RNTAAMVCSL ENRDECLMCG ENSBTAP00000017428/1-791 RPAANPIQFT LNKEKLKDKE KVSK-EEEKE RNTAAMVCSL ENRDECLMCG ENSTTRP00000005323/1-791 RPAANPIQFT LNKEKLKDKE KVSK-EEEKE RNTAAMVCSL ENRDECLMCG bmy_03646T0/1-745 RPAANPIQFT LNKEKLKDKE KVSK-EEEKE RNTAAMVCSL ENRDECLMCG BACU004951/1-339 RPAANPIQFT LNKEKLKDKE KVSK-EEEKE RNTAAMVCSL ENRDECLMCG 801 850 ENSP00000300738/1-792 S ENSBTAP00000017428/1-791 S ENSTTRP00000005323/1-791 S bmy_03646T0/1-745 S BACU004951/1-339 S