KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:01:30 2014 Check: 00 .. Name: bmy_15267T0/1-344 Len: 375 Check: 9803 Weight: 1.00 Name: ENSTTRP00000008618/1-323 Len: 375 Check: 7397 Weight: 1.00 Name: ENSP00000263116/1-333 Len: 375 Check: 3657 Weight: 1.00 Name: ENSBTAP00000017437/1-302 Len: 375 Check: 1929 Weight: 1.00 // 1 50 bmy_15267T0/1-344 MVIAAQGAGG TLLAVSPI-- -PDVPDSSDA SLSRVVLVAM VIAATGPSGL ENSTTRP00000008618/1-323 MVIGA--TRN TFGAPSPT-- -SRI---RDA RLSRVVLVAM VIAATGPSGL ENSP00000263116/1-333 MVIAGASWML GRAAASPTQT PPTTSTIRVA RRSRVALVAM VIAAAGSGGP ENSBTAP00000017437/1-302 ---------- ---------- ---------- --SREALVAM VMAAQGAGGT 51 100 bmy_15267T0/1-344 GSVRSLC--- ---SCRRMRS SVMPLGPTVS RDRVITSFPK WYTPAACLQL ENSTTRP00000008618/1-323 GSVRPLQ--- PPQDSGRMRS SVMPLGPTVS RDRVITSFPK WYTPAACLQL ENSP00000263116/1-333 GRAEPQL-SQ PSLDCGRMRS SLTPLGPPVS RDRVIASFPK WYTPEACLQL ENSBTAP00000017437/1-302 PGRRPAPAAL HTLPADRMRS SLTPLGPSVS RDRVISSFPK WYTPAACLQL 101 150 bmy_15267T0/1-344 REHFHGQVSA ACQHRNTGTV G--------- ---------- ---FCKNVFD ENSTTRP00000008618/1-323 REHFHGQVSA ACQHRNTGTV GXXXXXXXXX XXXXXXKTSL IHRFCKNVFD ENSP00000263116/1-333 REHFHGQVSA ACQRRNTGTV GLKLSKVVVV GDLYVGKTSL IHRFCKNVFD ENSBTAP00000017437/1-302 REHFHGQVST ACQRGNTGTV GLRLSKVVVV GDLYVGKTSL IHRFCKNVFD 151 200 bmy_15267T0/1-344 RDYKATIGVD FEMERFEVAG IPFSLQIWDT AGQEKFKCIA SAYYRGAQVI ENSTTRP00000008618/1-323 RDYKATIGVD FEMERFEVAG IPFSLQIWDT AGQEKFKCIA SAYYRGAQVI ENSP00000263116/1-333 RDYKATIGVD FEIERFEIAG IPYSLQIWDT AGQEKFKCIA SAYYRGAQVI ENSBTAP00000017437/1-302 HDYKATIGVD FEIERFEVAG TPFSLQIWDT AGQEKFKCIA SAYYRGAQVI 201 250 bmy_15267T0/1-344 ITAFDLTDMQ TLEHTRQVWG SAAPWLEDAL RENEPGACFL FLVGTKKDLL ENSTTRP00000008618/1-323 ITAFDLTDMQ TLEHTRQ--- ----WLEDAL RENEPGACFL FLVGTKKDLL ENSP00000263116/1-333 ITAFDLTDVQ TLEHTRQ--- ----WLEDAL RENEAGSCFI FLVGTKKDLL ENSBTAP00000017437/1-302 ITAFDLTDVQ TLEHSRQ--- ----WLEDAL RENEPGACFV FLVGTKKDLL 251 300 bmy_15267T0/1-344 SGAACKQAEA EAVRLANEMQ AEYWSVSAKT GENVKAFFSR VAALAFEHSV ENSTTRP00000008618/1-323 SGAACEQAEA EAVRLANEMQ AEYWSVSAKT GENVKAFFSR VAALAFERSV ENSP00000263116/1-333 SGAACEQAEA DAVHLAREMQ AEYWSVSAKT GENVKAFFSR VAALAFEQSV ENSBTAP00000017437/1-302 SGAACEQAEA EAVRLANEMR AEYWSVSAKT GENVKAFFSR VAALAFERSV 301 350 bmy_15267T0/1-344 LQDLERRSSA RPQVGDGDII RTCRDGGTPT RDPGQQEALQ PRLLLAEPAS ENSTTRP00000008618/1-323 LQDLERRSSA QLQVGDGDII RM---EGHP- --PETQDSKR P--------- ENSP00000263116/1-333 LQDLERQSSA RLQVGNGDLI QM---EGSP- --PETQESKR P--------- ENSBTAP00000017437/1-302 LQDLERRSNS PLQVGGGDVI RM---EGRR- --PETPDSRR P--------- 351 400 bmy_15267T0/1-344 EASTACMRVG SASSDLEGDM EHPPC ENSTTRP00000008618/1-323 -SSPGC---- ---------- ----C ENSP00000263116/1-333 -SSLGC---- ---------- ----C ENSBTAP00000017437/1-302 -SGPSC---- ---------- ----C