KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:32 2014 Check: 00 .. Name: ENSTTRP00000013235/1-1192 Len: 1272 Check: 8727 Weight: 1.00 Name: ENSBTAP00000017447/1-1194 Len: 1272 Check: 9032 Weight: 1.00 Name: ENSP00000367762/1-1194 Len: 1272 Check: 6938 Weight: 1.00 Name: bmy_16931T0/1-901 Len: 1272 Check: 1070 Weight: 1.00 Name: BACU000638/1-1206 Len: 1272 Check: 6786 Weight: 1.00 // 1 50 ENSTTRP00000013235/1-1192 ---------- ---MAKPYEF NWQKEVPSFL QEGAVFDRYE EESFVFEPNC ENSBTAP00000017447/1-1194 ---------- ---MAKPYEF NWQKEVPSFL QEGAVFDRYE EESFVFEPNC ENSP00000367762/1-1194 ---------- ---MAKPYEF NWQKEVPSFL QEGAVFDRYE EESFVFEPNC bmy_16931T0/1-901 MENSNLLKVL NIIMAKPYEF NWQKEVPSFL QEGAVFDRYE EESFVFEPNC BACU000638/1-1206 ---------- ---MAKPYEF NWQKEVPSFL QEGAVFDRYE EESFVFEPNC 51 100 ENSTTRP00000013235/1-1192 LFKVDEFGFF LTWRSEGKEG QVLECSLINS VRLGATPKDP KILAALEAIG ENSBTAP00000017447/1-1194 LFKVDEFGFF LTWRSEGKEG QVLECSLINS VRLGATPKDP KILAALEALG ENSP00000367762/1-1194 LFKVDEFGFF LTWRSEGKEG QVLECSLINS IRSGAIPKDP KILAALEAVG bmy_16931T0/1-901 LFKVDEFGFF LTWRSEGKEG QVLECSLINS VRLGATPKDP KILAALEAIG BACU000638/1-1206 LFKVDEFGFF LTWRSEGKEG QVLECSLINS VRLGATPKDP KILAALEAIG 101 150 ENSTTRP00000013235/1-1192 KSENDLEGRV VCVCSGTDLV NISFTYMVAE NSEVTK---- ---------- ENSBTAP00000017447/1-1194 KSENDLEGRI VCVCSGADLV NISFTYMVAE NPEITK---- ---------- ENSP00000367762/1-1194 KSENDLEGRI VCVCSGTDLV NISFTYMVAE NPEVTK---- ---------- bmy_16931T0/1-901 KSENDLEGRV VCVCSGTDLV NISFTYMVAE NSEVTKEPGP GAKGGFAVVL BACU000638/1-1206 KSENDLEGRV VCVCSGTDLV NISFTYMVAE NSEVTK---- ---------- 151 200 ENSTTRP00000013235/1-1192 ---------- ---------- ---------- ---------Q WVEGLRSIIH ENSBTAP00000017447/1-1194 ---------- ---------- ---------- ---------Q WVEGLRSIIH ENSP00000367762/1-1194 ---------- ---------- ---------- ---------Q WVEGLRSIIH bmy_16931T0/1-901 RSFFTFIRLS NKCSPKKPRP FRPALADLLT KNTFFFLFQQ WVEGLRSIIH BACU000638/1-1206 ---------- ---------- ---------- ---------Q WVEGLRSIIH 201 250 ENSTTRP00000013235/1-1192 NFRANNVSPM TCLKKHWMKL AFMTNTNGKI PVRSITRTFA SGKTEKVIFQ ENSBTAP00000017447/1-1194 NFRANNVSPM TCLKKHWMKL AFMTNTNGKI PVRSITRTFA SGKTEKVIFQ ENSP00000367762/1-1194 NFRANNVSPM TCLKKHWMKL AFMTNTNGKI PVRSITRTFA SGKTEKVIFQ bmy_16931T0/1-901 NFRANNVSPM TCLKKHWMKL AFMTNTNGKI PVRSITRTFA SGKTEKVIFQ BACU000638/1-1206 NFRANNVSPM TCLKKHWMKL AFMTNTNGKI PVRSITRTFA SGKTEKVIFQ 251 300 ENSTTRP00000013235/1-1192 ALKELGLPSG KNDEIEPAAF TYEKFYELTQ KICPRTDIED LFKKINGDKT ENSBTAP00000017447/1-1194 ALKELGLPSG KNDEIEPAAF TYEKFYELTQ KICPRTDIED LFKKINGDKT ENSP00000367762/1-1194 ALKELGLPSG KNDEIEPTAF SYEKFYELTQ KICPRTDIED LFKKINGDKT bmy_16931T0/1-901 ALKELGLPSG KNDEIEPAAF TYEKFYELTQ KICPRTDIED LFKKINGDKT BACU000638/1-1206 ALKELGLPSG KNDEIEPAAF TYEKFYELTQ KICPRTDIED LFKKINGDKT 301 350 ENSTTRP00000013235/1-1192 DYLTVDQLVS FLNEHQRDPR LNEILFPFYD TKRAMQIIEM YEPDEDLKKK ENSBTAP00000017447/1-1194 DYLTVDQLVS FLNEHQRDPR LNEILFPFYD AKRAMQIIEM YEPDEDLKKQ ENSP00000367762/1-1194 DYLTVDQLVS FLNEHQRDPR LNEILFPFYD AKRAMQIIEM YEPDEDLKKK bmy_16931T0/1-901 DYLTVDQLVS FLNEHQRDPR LNEILFPFYD AKRAMQIIEM YEPDEDLKKK BACU000638/1-1206 DYLTVDQLVS FLNEHQRDPR LNEILFPFYD AKRAMQIIEM YEPDEDLKKK 351 400 ENSTTRP00000013235/1-1192 GQISSDGFCR YLMSDENAPV FLDRLELYQE MDHPLAHYFI SSSHNTYLTG ENSBTAP00000017447/1-1194 GLISSDGFCR YLMSDENAPV FLDRLELYQE MDHPLAHYFI SSSHNTYLTG ENSP00000367762/1-1194 GLISSDGFCR YLMSDENAPV FLDRLELYQE MDHPLAHYFI SSSHNTYLTG bmy_16931T0/1-901 GQISSDGFCR YLMSDENAPV FLDRLELYQE MDHPLAHYFI SSSHNTYLTG BACU000638/1-1206 GQISSDGFCR YLMSDENAPV FLDRLELYQE MDHPLAHYFI SSSHNTYLTG 401 450 ENSTTRP00000013235/1-1192 RQFGGKSSVE MYRQVLLAGC RCVELDCWDG KGEDQEPIIT HGKAMCTDIL ENSBTAP00000017447/1-1194 RQFGGKSSVE MYRQVLLAGC SIVEIERWSG EKKSQEQIFT KYDALVVDVL ENSP00000367762/1-1194 RQFGGKSSVE MYRQVLLAGC RCVELDCWDG KGEDQEPIIT HGKAMCTDIL bmy_16931T0/1-901 RQFGGKSSVE MYRQVLLAGC ---------- ---------S HGLLVISMYN BACU000638/1-1206 RQFGGKSSVE MYRQVLLAGC RCVELDCWDG KGEDQEPIIT HGKAMCTDIL 451 500 ENSTTRP00000013235/1-1192 FKDVIQAIKE TAFVTSEYPV ILSFENHCSK YQQYKMSKYC EDLFGDLLLK ENSBTAP00000017447/1-1194 LKDVIQAIKE TAFVTSEYPV ILSFENHCSK YQQYKMSKYC EDLFGDLLLK ENSP00000367762/1-1194 FKDVIQAIKE TAFVTSEYPV ILSFENHCSK YQQYKMSKYC EDLFGDLLLK bmy_16931T0/1-901 LKDVIQAIKE TAFVTSEYPV ILSFENHCSK YQQYKMSKYC EDLFGDLLLK BACU000638/1-1206 FKDVIQAIKE TAFVTSEYPV ILSFENHCSK YQQYKMSKYC EDLFGDLLLK 501 550 ENSTTRP00000013235/1-1192 QALESHPLEP GRPLPSPNDL KRKILIKNKR LKSEVEKKQL EALKSMMEAG ENSBTAP00000017447/1-1194 QALESHPLEP GRPLPSPNDL KRKILIKNKR LKPEVEKKQL EALKSMMEAG ENSP00000367762/1-1194 QALESHPLEP GRALPSPNDL KRKILIKNKR LKPEVEKKQL EALRSMMEAG bmy_16931T0/1-901 QALESHPLEP GRPLPSPNDL KRKILIKNKR LKPEVEKKQL EALKSMMEAG BACU000638/1-1206 QALESHPLEP GRPLPSPNDL KRKILIKNKR LKPEVEKKQL EALKSMMEAG 551 600 ENSTTRP00000013235/1-1192 ESAAPVNILE DDNEEEIESA EQEEEAHPEY KYGNELSADD LGHKEAIANS ENSBTAP00000017447/1-1194 ESAAPVNILE DDNEEEIESA EQEEEAHPEY KYGSELSADD LGHKEAIANS ENSP00000367762/1-1194 ESASPANILE DDNEEEIESA DQEEEAHPEF KFGNELSADD LGHKEAVANS bmy_16931T0/1-901 ESAAPVNILE DDNEEEIESA EQEEEAHPEY KYGNELSADD LGQKEAIANS BACU000638/1-1206 ESAAPVNILE DDNEEEIESA EQEEEAHPEY KYGNELSADD LGQKEAIANS 601 650 ENSTTRP00000013235/1-1192 V--------- ---KKGLVTI EDEQAWMASY KYVGATTNIH PYLSTMINYA ENSBTAP00000017447/1-1194 V--------- ---KKGLVTV EDEQAWMASY KYVGATTNIH PYLSTMINYA ENSP00000367762/1-1194 V--------- ---KKGLVTV EDEQAWMASY KYVGATTNIH PYLSTMINYA bmy_16931T0/1-901 VKKTSDDLEH ENNKKGLVTI EDEQAWMASY KYVGATTNIH PYLSTMINYA BACU000638/1-1206 VKKASDDLEH ENNKKGLVTI EDEQAWMASY KYVGATTNIH PYLSTMINYA 651 700 ENSTTRP00000013235/1-1192 QPVKFQGFHV AEERNIHYNM SSFNESVGLG YLKTHAIEFV NYNKRQMSRI ENSBTAP00000017447/1-1194 QPVKFQGFHV AEERNIHYNM SSFNESVGLG YLKTHAIEFV NYNKRQMSRI ENSP00000367762/1-1194 QPVKFQGFHV AEERNIHYNM SSFNESVGLG YLKTHAIEFV NYNKRQMSRI bmy_16931T0/1-901 QPVKFQGFHV AEERNIHYNM SSFNESVGLG YLKTHAIEFV NYNKRQMSRI BACU000638/1-1206 QPVKFQGFHV AEERNIHYNM SSFNESVGLG YLKTHAIEFV NYNKRQMSRI 701 750 ENSTTRP00000013235/1-1192 YPKGGRVDSS NYTPLIFWN- -CPQMVVNYQ TPDLAMQLNQ GKFEYNGSCG ENSBTAP00000017447/1-1194 YPKGGRVDSS NYMPQIFWNA GCQMVSLNYQ TPDLAMQLNQ GKFEYNGSCG ENSP00000367762/1-1194 YPKGGRVDSS NYMPQIFWNA GCQMVSLNYQ TPDLAMQLNQ GKFEYNGSCG bmy_16931T0/1-901 YPKGGRVDSS NYMPQIFWNA GCQMVSLNYQ TPDLAMQLNQ GKFEYNGSCG BACU000638/1-1206 YPKGGRVDSS NYMPQIFWNA GCQMVSLNYQ TPDLAMQLNQ GKFEYNGSCG 751 800 ENSTTRP00000013235/1-1192 YLLKPDFMRR PDRTFDPFSE TPVDGVIAAT CSVQVISGQF LSDKKIGTYV ENSBTAP00000017447/1-1194 YLLKPDFMRR PDRTFDPFSE TPVDGVIAAT CSVQVISGQF LSDKKIGTYV ENSP00000367762/1-1194 YLLKPDFMRR PDRTFDPFSE TPVDGVIAAT CSVQVISGQF LSDKKIGTYV bmy_16931T0/1-901 YLLKPDFMRR PDRTFDPFSE TPVDGVIAAT CSVQVISGQF LSDKKIGTYV BACU000638/1-1206 YLLKPDFMRR PDRTFDPFSE TPVDGVIAAT CSVQVISGQF LSDKKIGTYV 801 850 ENSTTRP00000013235/1-1192 EVDMYGLPTD TIRKEFRTRM VMNNGLNPVY NEESFVFRKV ILPDLAVLRL ENSBTAP00000017447/1-1194 EVDMYGLPTD TIRKEFRTRM VMNNGLNPVY NEESFVFRKV ILPDLAVLRI ENSP00000367762/1-1194 EVDMYGLPTD TIRKEFRTRM VMNNGLNPVY NEESFVFRKV ILPDLAVLRI bmy_16931T0/1-901 EVDMYGLPTD TIRKEFRTRM VMNNGLNPVY NEESFVFRKV ILPDLAVLRI BACU000638/1-1206 EVDMYGLPTD TIRKEFRTRM VMNNGLNPVY NEESFVFRKV ILPDLAVLRI 851 900 ENSTTRP00000013235/1-1192 AVYDDNNKLI GQRILPLDGL QAGYRHISLR NEGNKPLSLP TIFCNIVLKT ENSBTAP00000017447/1-1194 AVYDDNNKLI GQRILPLDGL QAGYRHISLR NEGNKPLSLP TIFCNIVLKT ENSP00000367762/1-1194 AVYDDNNKLI GQRILPLDGL QAGYRHISLR NEGNKPLSLP TIFCNIVLKT bmy_16931T0/1-901 AVYDDNNKLI GQRILPLDGL QAGYRHISLR NEGNKPLSLP TIFCNIVLKT BACU000638/1-1206 AVYDDNNKLI GQRILPLDGL QAGYRHISLR NEGNKPLSLP TIFCNIVLKT 901 950 ENSTTRP00000013235/1-1192 YVPDGFGDIV DALSDPKKFF XXXXXXXXXX XXXXXXXSDI ADVPSDTSKN ENSBTAP00000017447/1-1194 YVPDGFGDIV DALSDPKKFL SITEKRADQM RAMGIETSDI ADVPSDTSKN ENSP00000367762/1-1194 YVPDGFGDIV DALSDPKKFL SITEKRADQM RAMGIETSDI ADVPSDTSKN bmy_16931T0/1-901 YVPDGFGG-- ---------- ---------- ---------- ---------- BACU000638/1-1206 YVPDGFGDIV DALSDPKKFL SITEKRADQM RAMGIETSDI ADVPSDTSKN 951 1000 ENSTTRP00000013235/1-1192 DKKGKANTAK ASVTPQSSSE LRPTTTAALG AGLEAKKGIE LIPQVRIEDL ENSBTAP00000017447/1-1194 DKKGKANTAK ANVTPQSSSE LRPTTTAALG AGLEAKKGIE LIPQVRIEDL ENSP00000367762/1-1194 DKKGKANTAK ANVTPQSSSE LRPTTTAALA SGVEAKKGIE LIPQVRIEDL bmy_16931T0/1-901 ---------- ---------- ---------- ---------- ---------- BACU000638/1-1206 EKKGKANTAK ASVTPQSSSE LRPTTTAALG AGLEAKKGIE LIPQVRIEDL 1001 1050 ENSTTRP00000013235/1-1192 KQMKAYLKHL KKQQKELNSL KKKHAKEHST MQKLHCTQVD KIVAQYDKEK ENSBTAP00000017447/1-1194 KQMKAYLKHL KKQQKELSSL KKKHAKEHST MQKLHCTQVD KIVAQYDKEK ENSP00000367762/1-1194 KQMKAYLKHL KKQQKELNSL KKKHAKEHST MQKLHCTQVD KIVAQYDKEK bmy_16931T0/1-901 ---------- ---------- ---------- ---------- ---------- BACU000638/1-1206 KQMKAYLKHL KKQQKELNSL KKKHAKEHST MQKLHCTQVD KIVAQYDKEK 1051 1100 ENSTTRP00000013235/1-1192 STHEKILEKA MKKKGGSNCL EMKKETEIKI QTLTSDHKSK VKEIVAQHTK ENSBTAP00000017447/1-1194 LTHEKILEKA MKKKGGSNCL EMKKETEIKI QTLTSDHKSK VKEIVAQHTK ENSP00000367762/1-1194 STHEKILEKA MKKKGGSNCL EMKKETEIKI QTLTSDHKSK VKEIVAQHTK bmy_16931T0/1-901 ---------- ---------- ---------- ---------- ---------- BACU000638/1-1206 STHEKILEKA MKKKGGSNCL EMKKETEVKI QTLTSDHKSK VKEIVAQHTK 1101 1150 ENSTTRP00000013235/1-1192 EWSDMINTHS AEEQEIRDLH LSQQCELLRK LLINAHEQQT LQLKLSHDRE ENSBTAP00000017447/1-1194 EWSDMINTHS AEEQEIRDLH LSQQCELLRK LLISAHEQQT QQLKLSHDRE ENSP00000367762/1-1194 EWSEMINTHS AEEQEIRDLH LSQQCELLKK LLINAHEQQT QQLKLSHDRE bmy_16931T0/1-901 ---------- ---------- ---------- ---------- ---------- BACU000638/1-1206 EWSDMINTHS AEEQEIRDLH LSQQCELLKK LLINAHEQQT QQLKLSHDRE 1151 1200 ENSTTRP00000013235/1-1192 SKEMRAHQAK ISMENSKAIS QDKSIKNKAE RERRVRELNS SNTKKFLEER ENSBTAP00000017447/1-1194 SKEMRAHQAK ISMENSKAIS QDKSIKNKAE RERRVRELNS SNTKKFLEER ENSP00000367762/1-1194 SKEMRAHQAK ISMENSKAIS QDKSIKNKAE RERRVRELNS SNTKKFLEER bmy_16931T0/1-901 ---------- ---------- ---------- ---------- ---------- BACU000638/1-1206 SKEMRAHQAK ISMENSKAIS QDKSIKNKAE RERRVRELNS SNTKKFLEER 1201 1250 ENSTTRP00000013235/1-1192 KRLAMKQSKE MDQLKKVQLE HLEFLEKQNE QXXXXXXXXX XXXXEGDAAD ENSBTAP00000017447/1-1194 KRLAMKQSKE MDQLKKVQLE HLEFLEKQNE QLLKSCHAVS QTQGEGDAAD ENSP00000367762/1-1194 KRLAMKQSKE MDQLKKVQLE HLEFLEKQNE QLLKSCHAVS QTQGEGDAAD bmy_16931T0/1-901 ---------- ---------- --EFIFAQN- ---------- ---------- BACU000638/1-1206 KRLAMKQSKE MDQLKKVQLE HLEFLEKQNE QLLKSCHAVS QTQGEGDAAD 1251 1300 ENSTTRP00000013235/1-1192 GEIGSRDGPQ TSNSCVKLQD AN ENSBTAP00000017447/1-1194 GEIGSRDGPQ TSNSCVKLQD TN ENSP00000367762/1-1194 GEIGSRDGPQ TSNSSMKLQN AN bmy_16931T0/1-901 --------PV NSP------- -- BACU000638/1-1206 GEIGSRDGPQ TSNSCVKLQD AN