KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:33 2014 Check: 00 .. Name: BACU012486/1-601 Len: 711 Check: 2679 Weight: 1.00 Name: ENSP00000337353/1-608 Len: 711 Check: 5849 Weight: 1.00 Name: ENSBTAP00000017463/1-612 Len: 711 Check: 2627 Weight: 1.00 Name: bmy_17226T0/1-507 Len: 711 Check: 2676 Weight: 1.00 Name: ENSTTRP00000012887/1-601 Len: 711 Check: 9765 Weight: 1.00 // 1 50 BACU012486/1-601 ---------- -IMSQEGSYG RWTISSSDES EEEKPRPDEP STSFLPHAEQ ENSP00000337353/1-608 ---------- --MSQEGDYG RWTISSSDES EEEKPKPDKP STSSLLCARQ ENSBTAP00000017463/1-612 ---------- -MMSQEGNYG KWTISSSDES EEEKPQPDKP SASLLPDAGQ bmy_17226T0/1-507 MKFPPFISRG SIMSQEGNYG RWTISSSDES EEEKPKPDEP STSFLPHAEQ ENSTTRP00000012887/1-601 ---------- --MSQEGNYG RWTISSSDES EEEKPRPDEP STSFLPHAEQ 51 100 BACU012486/1-601 GAASEAKYTC SEARKAAHRR KIAPVKFSNA ESVSEASPPK RQKGGSQEDL ENSP00000337353/1-608 GAANEPRYTC SEAQKAAHKR KISPVKFSNT DSV---LPPK RQKSGSQEDL ENSBTAP00000017463/1-612 GAAGQLKYTC SEARKAAHRR KLEPMKFSST DSVSEASPCK RQKTGSQEDL bmy_17226T0/1-507 GAASEPKYTC SEARKAAHRR KIAPVKFSNT DSISEASPPK RQKGSSQEDL ENSTTRP00000012887/1-601 GAASEPKYTC SEARKAAHRR KIAPVKFSST DSVSEASPPK RQKGGSQEDL 101 150 BACU012486/1-601 GRHLSSSEDE LPTNSEPLNG VFPSRCILDC FSELPVTSFL PPIQFNYCFD ENSP00000337353/1-608 GWCLSSSDDE L--------- ---------- ---------- ---------- ENSBTAP00000017463/1-612 GWCLSSSEDE L--------- ---------- ---------- ---------- bmy_17226T0/1-507 GWHLSSSEDE L--------- ---------- ---------- ---------- ENSTTRP00000012887/1-601 GWCLSSSEDE L--------- ---------- ---------- ---------- 151 200 BACU012486/1-601 VDWLVKQYPP EFRGSIMSQE GSYGRWTISS SDESEEEKPR PDEPSTSFLP ENSP00000337353/1-608 --------QP EMPQKQAEKV VI-------- --KKEKDISA PNDGT----- ENSBTAP00000017463/1-612 --------PQ ELQQEQAKDS RV-------- --KEEQGPPS PRDRT----- bmy_17226T0/1-507 --------PP ETQQKRAKDT GI-------- --KEEKGLPS PRDGA----- ENSTTRP00000012887/1-601 --------PP ETQQKQAEDT GV-------- --KEEKGLPS PRDGA----- 201 250 BACU012486/1-601 HAEQGAASEA KYTCSEARKA AHRRKIAPVK FSNAESVSEA SPPKRQKGGS ENSP00000337353/1-608 ---------- ------AQRT ENHGAPACHR LKEEEDEYET S-------GE ENSBTAP00000017463/1-612 ---------- ------ARGA GPHGPPTSCG LPEEEDEQET S-------GE bmy_17226T0/1-507 ---------- ------VPGA GHHSPSAGHG L-------ET S-------GE ENSTTRP00000012887/1-601 ---------- ------VPGA EHHSPSAGHG L-------ET S-------GE 251 300 BACU012486/1-601 QEDLGWHLSS SEDELPTNSE PLNGVFP--- --SRCILDCF SELPVTSFLP ENSP00000337353/1-608 GQDI-WDMLD KGNPFQFYLT RVSGVKPKYN SGALHIKDIL SPL-FGTLVS ENSBTAP00000017463/1-612 GQDV-WDLLD KGNPFQFYLT RVSGIKPKYN TGALHIKDIL SPL-FGTLVS bmy_17226T0/1-507 GQDI-WDMLE KGNPFQFYLT RVSGIKPKYN SGALHIRDIL SPL-FGTLVS ENSTTRP00000012887/1-601 GQDI-WDMLG KGNPFQFYLT RVSGIKPKYN SGALHIRDIL SPL-FGTLVS 301 350 BACU012486/1-601 PIQFNYCFDV DWLVKQYPPE FRKKPILLVH GDKREAKAHL HAQAKPYENI ENSP00000337353/1-608 SAQFNYCFDV DWLVKQYPPE FRKKPILLVH GDKREAKAHL HAQAKPYENI ENSBTAP00000017463/1-612 SAQFNYCFDV DWLIRQYPPE FRKKPVLLVH GDKREAKAHL LAEAKPYGNV bmy_17226T0/1-507 SAQFNYCFDV DWLVKQYPPE FRSXQSF--- ---------- --RLRPRGSI ENSTTRP00000012887/1-601 SAQFNYCFDV DWLIKQYPPE FRKKPILLVH GDKREAKAHL HAQAKPYENI 351 400 BACU012486/1-601 ALCQAKLDIA FGTHHT---- ---------- ---------- -------IWL ENSP00000337353/1-608 SLCQAKLDIA FGTHHTKMML LLYEEGLRVV IHTSNLIHAD WHQKTQGIWL ENSBTAP00000017463/1-612 TLCQAKLDIA FGTHHTKMML LLYEEGLRVV IHTSNLIRED WHQKTQGIWL bmy_17226T0/1-507 --IKAKLDIA FGTHHTKMML LLYEEGLRVV IHTSNLIHAD WHQKTQGIWL ENSTTRP00000012887/1-601 ALCQAKLDIA FGTHHTKMML LLYEEGLRVV IHTSNLIHAD WHQKTQGMWL 401 450 BACU012486/1-601 SPLYPRIVHG THRSGESTTH FKADLISYLM AYNAAPLKEW IDTIQEHDLS ENSP00000337353/1-608 SPLYPRIADG THKSGESPTH FKADLISYLM AYNAPSLKEW IDVIHKHDLS ENSBTAP00000017463/1-612 SPLYPRIVHG THGSGESATN FKADLISYLA AYNAAPLKEW IDTIQEHDLS bmy_17226T0/1-507 SPLYPRIVHG THRSGESTTH FKADLISYLM AYNAAPLKEW IDTIQEHDLS ENSTTRP00000012887/1-601 SPLYPRIVHG THRSGESTTH FKADLISYLM AYNASPLKEW IDTIQEHDLS 451 500 BACU012486/1-601 ETNVYLIGST PGRFQGNQKD NWGHFRLRKL LKEHASSIPK AESWPIVGQF ENSP00000337353/1-608 ETNVYLIGST PGRFQGSQKD NWGHFRLKKL LKDHASSMPN AESWPVVGQF ENSBTAP00000017463/1-612 ETNVYLIAST PGRFQGNQKD NWGHFRLRKL LKEHASPMPK AESWPVIGQF bmy_17226T0/1-507 ETNVYLIGST PGRFQGNQKD NWGHFRLRKL LKEHASSIPK AESWPIVGQF ENSTTRP00000012887/1-601 ETNVYLIGST PGRFQGNQKD NWGHFRLRKI LKEHTSSTPK AESWPVVCQF 501 550 BACU012486/1-601 SSVGSMGADE SKWLCSEFKE SLVTPGKESR TPG-SAVPLH LIYPSVENVR ENSP00000337353/1-608 SSVGSLGADE SKWLCSEFKE SMLTLGKESK TPGKSSVPLY LIYPSVENVR ENSBTAP00000017463/1-612 SSIGSMGADE SKWLCSEFKE SLVTLGKESR TLG-SAAPLH LIYPSVENVR bmy_17226T0/1-507 SSVGSMGADE SKWLCSEFKE SLVTPGKESR TPG-SAVPLH LIYPSVENVR ENSTTRP00000012887/1-601 SSVGSMGADE SKWLCSEFKE SLVTLGKEST AL---EVPLH LIYPSVENVR 551 600 BACU012486/1-601 TSLEGYPVMC VFPVT----- ---------S KWSADTSGRS NAMPHIKTYM ENSP00000337353/1-608 TSLEGYPAGG SLPYSIQTAE KQNWLHSYFH KWSAETSGRS NAMPHIKTYM ENSBTAP00000017463/1-612 TSLEGYPAGG SLPYSIQTAE KQNWLHSYFH KWSADTSGRS NAMPHIKTYL bmy_17226T0/1-507 TSLEGYPAGG SLPYSIQTAE KQNWLHSYFH KWSADTSGRS NAMPHIKTYM ENSTTRP00000012887/1-601 TSLEGYPAGG SLPYSIQTAE KQNWLHSYFH KWSADTSGRS NAMPHIKTYM 601 650 BACU012486/1-601 RPSPDFSQLA WFLVTREERA RALHHQMVLD ETI------- --CLLLDEPS ENSP00000337353/1-608 RPSPDFSKIA WFLVTSANLS KAAWGALEKN GTQLMIRSYE LGVLFLPSAF ENSBTAP00000017463/1-612 RPSPDFSQIA WFLVTSANLS KAAWGALEKS GTQLMIRSYE LGVLFLPSAF bmy_17226T0/1-507 RPSPDFSQLA WFLVTSSSI- ---------- ---------- ---------- ENSTTRP00000012887/1-601 RPSPDFSQLA WFLVTSANLS KAAWGALEKN GAQLMIRSYE LGVLFLPSAF 651 700 BACU012486/1-601 AVNEFLNRSE -----SQTPR CTAATRL--- ---------- ---------- ENSP00000337353/1-608 GLDSFKVKQK FFAG-SQEPM ATFPVPYDLP PELYGSKDRP WIWNIPYVKA ENSBTAP00000017463/1-612 GLDSFKVKQK FFSGSSQEPT ASFPVPYDLP PEVYGDRDRP WIWNIPYVKA bmy_17226T0/1-507 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012887/1-601 XXXXXXXXXX XXXX-XXXXX XXXXXXXXXX XXXXXXXXRP WIWNIPYVKA 701 750 BACU012486/1-601 ---------- - ENSP00000337353/1-608 PDTHGNMWVP S ENSBTAP00000017463/1-612 PDTHGNMWVP S bmy_17226T0/1-507 ---------- - ENSTTRP00000012887/1-601 PDTHGNMWVP S