KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:34 2014 Check: 00 .. Name: ENSP00000380352/1-711 Len: 715 Check: 6669 Weight: 1.00 Name: ENSBTAP00000017473/1-708 Len: 715 Check: 3141 Weight: 1.00 Name: ENSTTRP00000004231/1-715 Len: 715 Check: 6186 Weight: 1.00 Name: bmy_16857T0/1-636 Len: 715 Check: 4666 Weight: 1.00 Name: BACU007420/1-715 Len: 715 Check: 6922 Weight: 1.00 // 1 50 ENSP00000380352/1-711 MSSVQSQQEQ LSQSDPSPSP NSCSSFELID MDAGSLYEPV SPHWFYCKII ENSBTAP00000017473/1-708 MSSVESQQEQ SSQSDPSPSP NSCSSFELLD MDAGSLYEPV SPHWFYCKII ENSTTRP00000004231/1-715 MSSVESHEEQ LSQSDPSPSP NSCSSFELID MDVGSLYEPV SPHWFYCKII bmy_16857T0/1-636 MSSVESHEEQ LSQSDPSPSP NSCSSFELID MDAGSLYEPV SPHWFYCKII BACU007420/1-715 MSSVESHEEQ LSQSDPSSSP NSCSSFELID MDAGSLYEPV SPHWFYCKII 51 100 ENSP00000380352/1-711 DSKETWIPFN SEDSQQLEEA YSSGKGCNGR VVPTDGGRYD VHLGERMRYA ENSBTAP00000017473/1-708 DSKETWIPFN SQDSQQLEEA YSSGKDCD-R IVPTDGGRYD VHLGERMRYA ENSTTRP00000004231/1-715 DSKETWIPFN SQDSQQLEEA YGSGKDCDRR VVPTDGGRYD VHLGERMRYA bmy_16857T0/1-636 DSKETWIPFN SQDSQQLEEA YGSGKDCDRR VVPTDGGRYD VHLGERMRYA BACU007420/1-715 DSKETWIPFN SQDSQQLEEA YSSGKDCDRR VVPTDGGRYD VHLGERMRYA 101 150 ENSP00000380352/1-711 VYWDELASEV RRCTWFYKGD KDNKYVPYSE SFSQVLEETY MLAVTLDEWK ENSBTAP00000017473/1-708 VYWDELASEV RRCTWFYKGD KDNKYVPYSE SFSEVLEETY MLAVTLDEWK ENSTTRP00000004231/1-715 VYWDELASEV RRCTWFYKGD KDNKYVPYSE SFSQVLEETY MLAVTLDEWK bmy_16857T0/1-636 VYWDELASEV RRCTWFYKGD KDNKYVPYSE SFSQVLEETY MLAVTLDEWK BACU007420/1-715 VYWDELASEV RRCTWFYKGD KDNKYVPYSE SFSQVLEETY MLAVTLDEWK 151 200 ENSP00000380352/1-711 KKLESPNREI IILHNPKLMV HYQPVAGSDD WGSTPTEQGR PRTVKRGVEN ENSBTAP00000017473/1-708 KKLESPNREI IILHNPKLMV HYQPVAGSDE WGSAPAEQGR PRTVKRGVEN ENSTTRP00000004231/1-715 KKLESPNREV IILHNPKLMV HYQPIAGSDE WGSTPTEQGR PRTVKRGVEN bmy_16857T0/1-636 KKLESPNREV IILHNPKLMV HYQPVAGSDE WGSTPTEQGR PRTVKRGVEN BACU007420/1-715 KKLESPNREV IILHNPKLMV HYQPVAGSDE WGSTPTEQGR PRTVKRGVEN 201 250 ENSP00000380352/1-711 ISVDIHCGEP LQIDHLVFVV HGIGPACDLR FRSIVQCVND FRSVSLNLLQ ENSBTAP00000017473/1-708 ISVDIHCGEP LQIDHLVFVV HGIGPACDLR FRSIVQCVND FRSVSLNLLQ ENSTTRP00000004231/1-715 ISVDIHCGEP LQIDHLVFVV HGIGPACDLR FRSIVQCVND FRSVSLNLLQ bmy_16857T0/1-636 ISVDIHCGEP LQIDHLVFVV HGIGPACDLR FRSIVQCVND FRSVSLNLLQ BACU007420/1-715 ISVDIHCGEP LQIDHLVFVV HGIGPACDLR FRSIVQCVND FRSVSLNLLQ 251 300 ENSP00000380352/1-711 THFKKAQENQ QIGRVEFLPV NWHSPLHSTG VDVDLQRITL PSINRLRHFT ENSBTAP00000017473/1-708 THFKKAQENQ QIGRVEFLPV NWHSPLHSTG VDVDLQRITL PSINRLRHFT ENSTTRP00000004231/1-715 THFKKAQENQ QIGRVEFLPV NWHSPLHSTG VDVDLQRITL PSINRLRHFT bmy_16857T0/1-636 THFKKAQENQ QIGRVEFLPV NWHSPLHSTG VDVDLQRITL PSINRLRHFT BACU007420/1-715 THFKKAQENQ QIGRVEFLPV NWHSPLHSTG VDVDLQRITL PSINRLRHFT 301 350 ENSP00000380352/1-711 NDTILDVFFY NSPTYCQTIV DTVASEMNRI YTLFLQRNPD FKGGVSIAGH ENSBTAP00000017473/1-708 NDTILDVFFY NSPTYCQTIV DTVASEMNRI YILFLQRNPD FKGSVSIAGH ENSTTRP00000004231/1-715 NDTILDVFFY NSPTYCQTIV DTVASEMNRL YVLFLQRNPD FKGGVSIAGH bmy_16857T0/1-636 NDTILDVFFY NSPTYCQTIV DTVASEMNRL YVLFLQRNPN FKGGVSIAGH BACU007420/1-715 NDTILDVFFY NSPTYCQTIV DTVASEMNRL YVLFLQRNPN FKGGVSIAGH 351 400 ENSP00000380352/1-711 SLGSLILFDI LTNQKDSLGD IDSEKDSLNI VMDQGDTPTL EEDLKKLQLS ENSBTAP00000017473/1-708 SLGSLILFDI LTNQKDSLGD TDSKKDLPSI FMDQGDTPTL EEELKKLQLS ENSTTRP00000004231/1-715 SLGSLILFDI LTNQKDSLGD VDSKKDLPSI FMDQGDTPTL EEDLKKLQLS bmy_16857T0/1-636 SLGSLILFDI LTNQKDSLGD VDSKKDLPSI FMDQGDTPTL EEDLKKLQLS BACU007420/1-715 SLGSLILFDI LTNQKDSLGD VDSKKDLPSI FMDQGDTPTL EEDLKKLQLS 401 450 ENSP00000380352/1-711 EFFDIFEKEK VDKEALALCT DRDLQEIGIP LGPRKKILNY FSTRKNSMGI ENSBTAP00000017473/1-708 EFFSIFEKEK IDKEALTLCT DKDLQEMGIP LGPRKKILNY FRTRKNSMGV ENSTTRP00000004231/1-715 EFFSVFEKEK VDKEALALCT DKDLQEMGIP LGPRKKILNY LRTRKNSMGI bmy_16857T0/1-636 EFFSIFEKEK VDKEALALCT DKDLQEMGIP LGPRKKILNY LRTRKNSMGI BACU007420/1-715 EFFSIFEKEK VDKEALALCT DKDLQEMGIP LGPRKKILNY LRIRKNSVGI 451 500 ENSP00000380352/1-711 KRPAPQPASG A---NIPKES EFCSSSN-TR NGDYLDVGIG QVSVKYPRLI ENSBTAP00000017473/1-708 NRPTPQSPAG ANMSNIPKES EFYSSTDG-- ----LDVGIG QVPVKYPRLI ENSTTRP00000004231/1-715 NRPTPQSPAG ANMSNIPKES EFCSSTNGTG NGEHLDVGIG QVPVKYPRLI bmy_16857T0/1-636 NRPTPKSPAG ANMSNIPKES EFCSSTNGTG NDEHLDVGIG QVPVKYPRLI BACU007420/1-715 NRPTPKSPAG ANMSNIPKES EFCSSTNGTG NDEHLDVGIG QVPVKYPRLI 501 550 ENSP00000380352/1-711 YKPEIFFAFG SPIGMFLTVR GLKRIDPNYR FPTCKGFFNI YHPFDPVAYR ENSBTAP00000017473/1-708 YKPEIFFAFG SPIGMFLTVR GLKRIDPNYR FPTCKGFFNI YHPFDPVAYR ENSTTRP00000004231/1-715 YKPEIFFAFG SPIGMFLTVR GLKRIDPNYK FPTCKGFFNI YHPFDPVAYR bmy_16857T0/1-636 YKPEIFFAFG SPIGMFLTVR GLKRIDPNYK FPTCKGFFNI YHPFDPVAYR BACU007420/1-715 YKPEIFFAFG SPIGMFLTVR GLKRIDPNYK FPTCKGFFNI YHPFDPVAYR 551 600 ENSP00000380352/1-711 IEPMVVPGVE FEPMLIPHHK GRKRMHLELR EGLTRMSMDL KNNLLGSLRM ENSBTAP00000017473/1-708 IEPMVVPGVE FEPMLIPHHK GRKRMHLELR EGLTRMSMDL KNNLLGSLRM ENSTTRP00000004231/1-715 IEPMVVPGVE FEPMLIPHHK GRKRMHLELR EGLTRMSMDL KNNLLGSLRM bmy_16857T0/1-636 IEPMVVPGVE FEPMLIPHHK GRKRMHLELR EGLTRMSMDL KNNLLGSLRM BACU007420/1-715 IEPMVVPGVE FEPMLIPHHK GRKRMHLELR EGLTRMSMDL KNNLLGSLRM 601 650 ENSP00000380352/1-711 AWKSFTRAPY PALQASETPE ETEAEPESTS EKPSDVNTEE TSVAVKEEVL ENSBTAP00000017473/1-708 AWKSFTRAPY PALQASETAE ETEAEPESNS EKHSDVNTEE NPVPVKEEAP ENSTTRP00000004231/1-715 AWKSFTRAPY PALQASETAE ETEAEPESSS EKPSDVSTEE NLVAVKQEAP bmy_16857T0/1-636 AWKSFTRAPY PALQASETAE ETEAEPESSS EKPS------ ---------- BACU007420/1-715 AWKSFTRAPY PALQASETAE ETEVEPESSS EKPSDVSTEE NLVAVKQEAP 651 700 ENSP00000380352/1-711 PINVGMLNGG QRIDYVLQEK PIESFNEYLF ALQSHLCYWE SEDTVLLVLK ENSBTAP00000017473/1-708 PIHVGMLNGG QRIDYVLQEK PIESFNEYLF ALQSHLCYWE SEDTVLLVLK ENSTTRP00000004231/1-715 PIHVGMLNGG QRIDYVLQEK PIESFNEYLF ALQSHLCYWE SEDTVLLVLK bmy_16857T0/1-636 ---------G Q--------- ---------- ---------- ---------- BACU007420/1-715 PIHVGMLNGG QRIDYVLQEK PIESFNEYLF ALQSHLCYWE SEDTVLLVLK 701 750 ENSP00000380352/1-711 EIYQTQGIFL DQPLQ ENSBTAP00000017473/1-708 EIYQTQGIFL DQPLQ ENSTTRP00000004231/1-715 EIYQTQGIFL DQPLQ bmy_16857T0/1-636 ---------- ----- BACU007420/1-715 EIYQTQGIFL DQPLQ