KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:36 2014 Check: 00 .. Name: ENSTTRP00000000517/1-567 Len: 712 Check: 2565 Weight: 1.00 Name: BACU003343/1-647 Len: 712 Check: 8860 Weight: 1.00 Name: bmy_01620T0/1-671 Len: 712 Check: 9480 Weight: 1.00 Name: ENSP00000344666/1-595 Len: 712 Check: 5284 Weight: 1.00 Name: ENSBTAP00000017489/1-596 Len: 712 Check: 9266 Weight: 1.00 // 1 50 ENSTTRP00000000517/1-567 -AAAKGSA-- ---------- ---------- ------CV-- ---------- BACU003343/1-647 MAGAIASRMS FSSLKRKQPK TFTVRIVTMD AEMEFNCEGS HDCKSQLGVN bmy_01620T0/1-671 MAGAIASRMS FSSLKRKQPK TFTVRIVTMD AEMEFNCEGS HDCKSQLGVN ENSP00000344666/1-595 MAGAIASRMS FSSLKRKQPK TFTVRIVTMD AEMEFNCE-- ---------- ENSBTAP00000017489/1-596 MAGAIASRMS FSSLKRKQPK TFTVRIVTMD AEMEFNCE-- ---------- 51 100 ENSTTRP00000000517/1-567 ---------- ---------- ---------- ---------- ---------- BACU003343/1-647 VERGDHSPPC SRIPEIMTLI SPVGYWCQLL PTTEKC---- ---------- bmy_01620T0/1-671 VERGDHSPPC SRIPKIMAFH TWQPHSVLCT AQRKQCEKCN AKAAKAKKTR ENSP00000344666/1-595 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017489/1-596 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000000517/1-567 ---------- -MKWKGKDLF DLVCRTLGLR ETWFFGLQYT IKDTVAWLKM BACU003343/1-647 -CIPATFLLQ SMKWKGKDLF DLVCRTLGLR ETWFFGLQYT IKDTVAWLKM bmy_01620T0/1-671 AVFPCWFVPL QMKWKGKDLF DLVCRTLGLR ETWFFGLQYT IKDTVAWLKM ENSP00000344666/1-595 ---------- -MKWKGKDLF DLVCRTLGLR ETWFFGLQYT IKDTVAWLKM ENSBTAP00000017489/1-596 ---------- -MKWKGKDLF DLVCRTLGLR ETWFFGLQYT IKDTVAWLKM 151 200 ENSTTRP00000000517/1-567 DKKVLDHDVS KEEPVTFHFL AKFYPENAEE ELVQEITQHL FFLQVKKQIL BACU003343/1-647 DKK------- ---------- ---------- ---------- ----VKKQIL bmy_01620T0/1-671 DKKVLDHDVS KEEPVTFHFL AKFYPENAEE ELVQEITQHL FFLQVKKQIL ENSP00000344666/1-595 DKKVLDHDVS KEEPVTFHFL AKFYPENAEE ELVQEITQHL FFLQVKKQIL ENSBTAP00000017489/1-596 DKKVLDHDVS KEEPVTFHFL AKFYPENAEE ELVQEITQHL FFLQVKKQIL 201 250 ENSTTRP00000000517/1-567 DEKIYCPPEA SVLLASYAVQ AKYGDYDPSV HKRGFLAQEE LLPKRXX--- BACU003343/1-647 DEKIYCPPEA SVLLASYAVQ AKYGDYDPSV HKRGFLAQEE LLPKRVCSSP bmy_01620T0/1-671 DEKIYCPPEA SVLLASYAVQ AKYGDYDPSV HKRGFLAQEE LLPKRVI--- ENSP00000344666/1-595 DEKIYCPPEA SVLLASYAVQ AKYGDYDPSV HKRGFLAQEE LLPKRVI--- ENSBTAP00000017489/1-596 DEKIYCPPEA SVLLASYAVQ AKYGDYDPSV HKRGFLAQEE LLPKRVI--- 251 300 ENSTTRP00000000517/1-567 ---------- -------XXX XXX---XXXX XX-------- XXXXXXXX-- BACU003343/1-647 SPDFTCSSDG FCSGKGSSTY SLAHGRPEIS SKLSSVCAAL QISHFRASDG bmy_01620T0/1-671 ---------- -------NLY QMT---PEMW EE-------- RITAWYAE-- ENSP00000344666/1-595 ---------- -------NLY QMT---PEMW EE-------- RITAWYAE-- ENSBTAP00000017489/1-596 ---------- -------NLY QMT---PEMW EE-------- RITAWYAE-- 301 350 ENSTTRP00000000517/1-567 -XXXXXXDEA EMEYLKIAQD LEMYGVNYFT IR-------- -NKKGTELLL BACU003343/1-647 VFHSPRRDEA EMEYLKIAQD LEMYGVNYFT IR-------- -NKKGTELLL bmy_01620T0/1-671 -HRGRARDEA EMEYLKIAQD LEMYGVNYFT IRVCGSFCEF PNKKGTELLL ENSP00000344666/1-595 -HRGRARDEA EMEYLKIAQD LEMYGVNYFA IR-------- -NKKGTELLL ENSBTAP00000017489/1-596 -HRGRARDEA EMEYLKIAQD LEMYGVNYFT IR-------- -NKKGTELLL 351 400 ENSTTRP00000000517/1-567 GVDALGLHIY DPENRLTPKI SFPWNEIRNI SYSDKEFTIK PLDKKIDVFK BACU003343/1-647 GVDALGLHIY DPENRLTPKI SFPWNEIRNI SYSDKEFTIK PLDKKIDVFK bmy_01620T0/1-671 GVDALGLHIY DPENRLTPKI SFPWNEIRNI SYSDKEFTIK PLDKKIDVFK ENSP00000344666/1-595 GVDALGLHIY DPENRLTPKI SFPWNEIRNI SYSDKEFTIK PLDKKIDVFK ENSBTAP00000017489/1-596 GVDALGLHIY DPENKLTPKI SFPWNEIRNI SYSDKEFTIK PLDKKIDVFK 401 450 ENSTTRP00000000517/1-567 FNSSKLRVNK LILQLCIGNH DLFMRRRKAD SLEVQQMKAQ AREEKARKQM BACU003343/1-647 FNSSKLRVNK LILQLCIGNH DLFMRRRKAD SLEVQQMKAQ AREEKARKQM bmy_01620T0/1-671 FNSSKLRVNK LILQLCIGNH DLFMRRRKAD SLEVQQMKAQ AREEKARKQM ENSP00000344666/1-595 FNSSKLRVNK LILQLCIGNH DLFMRRRKAD SLEVQQMKAQ AREEKARKQM ENSBTAP00000017489/1-596 FNSSKLRVNK LILQLCIGNH DLFMRRRKAD SLEVQQMKAQ AREEKARKQM 451 500 ENSTTRP00000000517/1-567 ERQRLAREKQ MREEAERTRD ELERRLLQMK EEATMANEAL MRSEETADLL BACU003343/1-647 ERQRLAREKQ MREEAERTRD ELERRLLQMK EEATMANEAL MRSEETADLL bmy_01620T0/1-671 ERQRLAREKQ MREEAERTRD ELERRLLQMK EEATMANEAL MRSEETADLL ENSP00000344666/1-595 ERQRLAREKQ MREEAERTRD ELERRLLQMK EEATMANEAL MRSEETADLL ENSBTAP00000017489/1-596 ERQRLAREKQ MREEAERTRD ELERRLLQMK EEATMANEAL MRSEETADLL 501 550 ENSTTRP00000000517/1-567 AEKAQITEEE AKLLAQKAAE AEQEMQRIKA TAIRTEEEKR LMEQKVLEAE BACU003343/1-647 AEKAQITEEE AKLLAQKAAE AEQEMQRIKA TAIRTEEEKR LMEQKVLEAE bmy_01620T0/1-671 AEKAQITEEE AKLLAQKAAE AEQEMQRIKA TAIRTEEEKR LMEQKVLEAE ENSP00000344666/1-595 AEKAQITEEE AKLLAQKAAE AEQEMQRIKA TAIRTEEEKR LMEQKVLEAE ENSBTAP00000017489/1-596 AEKAQITEEE AKLLAQKAAE AEQEMQRIKA TAIRTEEEKR LMEQKVLEAE 551 600 ENSTTRP00000000517/1-567 VLALKMAEES ERRAKEADQL KQDLQEAREA ERRAKQKLLE ITTKPTYPPM BACU003343/1-647 VLALKMAEES ERRAKEADQL KQDLQEAREA ERRAKQKLLE ITTKPTYPPM bmy_01620T0/1-671 VLALKMAEES ERRAKEADQL KQDLQEAREA ERRAKQKLLE ITTKPTYPPM ENSP00000344666/1-595 VLALKMAEES ERRAKEADQL KQDLQEAREA ERRAKQKLLE IATKPTYPPM ENSBTAP00000017489/1-596 VLALKMAEES ERRAKEADQL KQDLQEAREA ERRAKQKLLE ITTKPTYPPM 601 650 ENSTTRP00000000517/1-567 NPLPAPLPPD IPSFNLIGDS LSFDFKDTDM KRLSMEIEKE KVEYMEKSKH BACU003343/1-647 NPLPAPLPPD IPSFNLIGDS LSFDFKDTDM KRLSMEIEKE KVEYMEKSKH bmy_01620T0/1-671 NPLPAPLPPD IPSFNLIGDS LSFDFKDTDM KRLSMEIEKE KVEYMEKSKH ENSP00000344666/1-595 NPIPAPLPPD IPSFNLIGDS LSFDFKDTDM KRLSMEIEKE KVEYMEKSKH ENSBTAP00000017489/1-596 NPLPAPLPPD MASFSLTGDS LSFDFKDTDM KRLSMEIEKE KVEYMEKSKH 651 700 ENSTTRP00000000517/1-567 LQEQLNELKT EIEALKLKER ETALDILHNE NSDQGGTSSK HNTIKKLTLQ BACU003343/1-647 LQEQLNELKT EIEALKLKER ETALDILHNE NSDQGGTSSK HNTIKKLTLQ bmy_01620T0/1-671 LQEQLNELKT EIEALKLKER ETALDILHNE NSDQGGTSSK HNTIKKVP-- ENSP00000344666/1-595 LQEQLNELKT EIEALKLKER ETALDILHNE NSDR-GGSSK HNTIKKLTLQ ENSBTAP00000017489/1-596 LQEQLNELKT EIEALRLKER ETALDMLHNE NSDRGGGGSK HNTIKKLTLQ 701 750 ENSTTRP00000000517/1-567 SAKSRVAFFE EL BACU003343/1-647 SAKSRVAFFE EL bmy_01620T0/1-671 ---SLLSFAD -- ENSP00000344666/1-595 SAKSRVAFFE EL ENSBTAP00000017489/1-596 SAKSRVAFFE EL