KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:36 2014 Check: 00 .. Name: BACU015546/1-777 Len: 819 Check: 9489 Weight: 1.00 Name: bmy_04291T0/1-647 Len: 819 Check: 856 Weight: 1.00 Name: ENSP00000432083/1-646 Len: 819 Check: 4205 Weight: 1.00 Name: ENSTTRP00000010561/1-650 Len: 819 Check: 1017 Weight: 1.00 Name: ENSBTAP00000017497/1-650 Len: 819 Check: 1017 Weight: 1.00 // 1 50 BACU015546/1-777 MAAPLALVLV VAVTVRAALF RSSLAEFISE RVEVVSPLSS WKRVVEGLSL bmy_04291T0/1-647 MPKGPAVGID LGTTY----- -SCVGVFQHG KVEIIAN--- ---------- ENSP00000432083/1-646 MSKGPAVGID LGTTY----- -SCVGVFQHG KVEIIAN--- ---------- ENSTTRP00000010561/1-650 MSKGPAVGID LGTTY----- -SCVGVFQHG KVEIIAN--- ---------- ENSBTAP00000017497/1-650 MSKGPAVGID LGTTY----- -SCVGVFQHG KVEIIAN--- ---------- 51 100 BACU015546/1-777 LDLGVSPYSG AVFHETPLII YLFHFLIDYA ELVFMITDVL TAIALYFAIQ bmy_04291T0/1-647 -DQGN----- ---RTTP--- ----SYVAFT DTKRLIGDAA K--------- ENSP00000432083/1-646 -DQGN----- ---RTTP--- ----SYVAFT DTERLIGDAA K--------- ENSTTRP00000010561/1-650 -DQGN----- ---RTTP--- ----SYVAFT DTERLIGDAA K--------- ENSBTAP00000017497/1-650 -DQGN----- ---RTTP--- ----SYVAFT DTERLIGDAA K--------- 101 150 BACU015546/1-777 DFNKVVFKKQ KLLLELDQYA PDVAELIRTP MEMRYIPLKV ALFYLLNPYT bmy_04291T0/1-647 --NQVAMNPT NTVFDAKCLT ARRPDDAVVQ SDMKYWPF-- ---------- ENSP00000432083/1-646 --NQVAMNPT NTVFDAKRLI GRRFDDAVVQ SDMKHWPF-- ---------- ENSTTRP00000010561/1-650 --NQVAMNPT NTVFDAKRLI GRRFDDAVVQ SDMKHWPF-- ---------- ENSBTAP00000017497/1-650 --NQVAMNPT NTVFDAKRLI GRRFDDAVVQ SDMKHWPF-- ---------- 151 200 BACU015546/1-777 ILSCVAKSTC AINNTLIAFF ILTTIKVVND SGRPMVQVEY KGETKSFYPE bmy_04291T0/1-647 ---------- ---------- -----MVVND ASRPKVQVEY KGETKSFYPE ENSP00000432083/1-646 ---------- ---------- -----MVVND AGRPKVQVEY KGETKSFYPE ENSTTRP00000010561/1-650 ---------- ---------- -----MVVND AGRPKVQVEY KGETKSFYPE ENSBTAP00000017497/1-650 ---------- ---------- -----MVVND AGRPKVQVEY KGETKSFYPE 201 250 BACU015546/1-777 EVSSMVLTKM KEIAEAYLGK TVTNAVVTVP AYFNDSQHQA TKDAGTIAGL bmy_04291T0/1-647 EVSSMVLTKM KEIAEAYLGK TVTNAVVTVP TYFNDSQRQA TKDAGTIAGL ENSP00000432083/1-646 EVSSMVLTKM KEIAEAYLGK TVTNAVVTVP AYFNDSQRQA TKDAGTIAGL ENSTTRP00000010561/1-650 EVSSMVLTKM KEIAEAYLGK TVTNAVVTVP AYFNDSQRQA TKDAGTIAGL ENSBTAP00000017497/1-650 EVSSMVLTKM KEIAEAYLGK TVTNAVVTVP AYFNDSQRQA TKDAGTIAGL 251 300 BACU015546/1-777 NVLRIINEPT AAAVAYDLDK KIGAERNVLI FDLGGGTFDV SVLTIEDGIF bmy_04291T0/1-647 NVLRIINEPT AAAIAYGLDE KVGAESNVLI FDLGGDTFDV SILTIEBGIF ENSP00000432083/1-646 NVLRIINEPT AAAIAYGLDK KVGAERNVLI FDLGGGTFDV SILTIEDGIF ENSTTRP00000010561/1-650 NVLRIINEPT AAAIAYGLDK KVGAERNVLI FDLGGGTFDV SILTIEDGIF ENSBTAP00000017497/1-650 NVLRIINEPT AAAIAYGLDK KVGAERNVLI FDLGGGTFDV SILTIEDGIF 301 350 BACU015546/1-777 EVKSTAGDTH LGGEDFDNRM VNHFIAEFKC KHKKGISENK KAVRRLRTAC bmy_04291T0/1-647 EVKST--DTH LGGEDFDNRM VDHFIAEFKH KHKKDTSENK RAVRRLRTAC ENSP00000432083/1-646 EVKSTAGDTH LGGEDFDNRM VNHFIAEFKR KHKKDISENK RAVRRLRTAC ENSTTRP00000010561/1-650 EVKSTAGDTH LGGEDFDNRM VNHFIAEFKR KHKKDISENK RAVRRLRTAC ENSBTAP00000017497/1-650 EVKSTAGDTH LGGEDFDNRM VNHFIAEFKR KHKKDISENK RAVRRLRTAC 351 400 BACU015546/1-777 EHAKHTLSSS TQATIEIDSL CEGIDFYTSI TRARFEELNA DLFHGTLDPV bmy_04291T0/1-647 ERARCTLSSS TQASTETDSL YEGIDFYTSI TRARFEELNA DLFRDTLDPV ENSP00000432083/1-646 ERAKRTLSSS TQASIEIDSL YEGIDFYTSI TRARFEELNA DLFRGTLDPV ENSTTRP00000010561/1-650 ERAKRTLSSS TQASIEIDSL YEGIDFYTSI TRARFEELNA DLFRGTLDPV ENSBTAP00000017497/1-650 ERAKRTLSSS TQASIEIDSL YEGIDFYTSI TRARFEELNA DLFRGTLDPV 401 450 BACU015546/1-777 EKALRDAKLD KSQIHDIVLV GGSTRIPKNQ KLLQDFFNGK ELNKSINPDE bmy_04291T0/1-647 EKALRDAKLD KSQIHDIVLV GGSTHIPKIQ KLLQDFFNGK ELNKSINPDE ENSP00000432083/1-646 EKALRDAKLD KSQIHDIVLV GGSTRIPKIQ KLLQDFFNGK ELNKSINPDE ENSTTRP00000010561/1-650 EKALRDAKLD KSQIHDIVLV GGSTRIPKIQ KLLQDFFNGK ELNKSINPDE ENSBTAP00000017497/1-650 EKALRDAKLD KSQIHDIVLV GGSTRIPKIQ KLLQDFFNGK ELNKSINPDE 451 500 BACU015546/1-777 AVAYGAAVQA AILSGDKSEN VQDLLLLDVS PLSRGIETAG SAFLSAIFLA bmy_04291T0/1-647 AVAYGAAVQA AILSGHKSEN VQDLLLLDVT PLSLGIETAG ---------- ENSP00000432083/1-646 AVAYGAAVQA AILSGDKSEN VQDLLLLDVT PLSLGIETAG ---------- ENSTTRP00000010561/1-650 AVAYGAAVQA AILSGDKSEN VQDLLLLDVT PLSLGIETAG ---------- ENSBTAP00000017497/1-650 AVAYGAAVQA AILSGDKSEN VQDLLLLDVT PLSLGIETAG ---------- 501 550 BACU015546/1-777 LATYQSLYPL TLFVPGLLYL LQRQYIPVKV KSKAFWIFSW EYAMMYLGSL bmy_04291T0/1-647 ---------- -----GVMTV LIKRNTTIPT KQTQMQTFT- TYSDSQLGVL ENSP00000432083/1-646 ---------- -----GVMTV LIKRNTTIPT KQTQ--TFT- TYSDNQPGVL ENSTTRP00000010561/1-650 ---------- -----GVMTV LIKRNTTIPT KQTQ--TFT- TYSDNQPGVL ENSBTAP00000017497/1-650 ---------- -----GVMTV LIKRNTTIPT KQTQ--TFT- TYSDNQPGVL 551 600 BACU015546/1-777 VVI------V CLSFFLLSSW DF--IPAVYG FILSVPDLTP NIGLFWYFFA bmy_04291T0/1-647 IRVYEGERAM TKDNNLLGKF EHTGIPPA-- -----PHGVP QIEV------ ENSP00000432083/1-646 IQVYEGERAM TKDNNLLGKF ELTGIPPA-- -----PRGVP QIEV------ ENSTTRP00000010561/1-650 IQVYEGERAM TKDNNLLGKF ELTGIPPA-- -----PRGVP QIEV------ ENSBTAP00000017497/1-650 IQVYEGERAM TKDNNLLGKF ELTGIPPA-- -----PRGVP QIEV------ 601 650 BACU015546/1-777 EMFEHFSLFF VCVFQINVFF YTIPLAIKLK EHPIFFMFIQ IAIISIFKSY bmy_04291T0/1-647 ----TFDTDA NGILNVSAVD QSTG-----K ENKI------ --TITNDKGH ENSP00000432083/1-646 ----TFDIDA NGILNVSAVD KSTG-----K ENKI------ --TITNDKGR ENSTTRP00000010561/1-650 ----TFDIDA NGILNVSAVD KSTG-----K ENKI------ --TITNDKGR ENSBTAP00000017497/1-650 ----TFDIDA NGILNVSAVD KSTG-----K ENKI------ --TITNDKGR 651 700 BACU015546/1-777 PTVGDVALYM AFFPVWNHLY RFLRNIFVLA CIIIACSLLF PVLWHLWIYA bmy_04291T0/1-647 LSKEDIERMV QEADKHKTED EKQRD----- ---------- --------KV ENSP00000432083/1-646 LSKEDIERMV QEAEKYKAED EKQRD----- ---------- --------KV ENSTTRP00000010561/1-650 LSKEDIERMV QEAEKYKAED EKQRD----- ---------- --------KV ENSBTAP00000017497/1-650 LSKEDIERMV QEAEKYKAED EKQRD----- ---------- --------KV 701 750 BACU015546/1-777 GSANSNFFYA ITLTFNVGQV RDQQKDNGHL GLDVNKKECL -KCSFIKS-- bmy_04291T0/1-647 SSKNSLESYA ----FNVKAT VEDEKLQGKI N-DEDKQKIL DKRNAIINWL ENSP00000432083/1-646 SSKNSLESYA ----FNMKAT VEDEKLQGKI N-DEDKQKIL DKCNEIINWL ENSTTRP00000010561/1-650 SSKNSLESYA ----FNMKAT VEDEKLQGKI N-DEDKQKIL DKCNEIINWL ENSBTAP00000017497/1-650 SSKNSLESYA ----FNMKAT VEDEKLQGKI N-DEDKQKIL DKCNEIINWL 751 800 BACU015546/1-777 -KILLISDYF YAFLRREYY- ----LTHGLY LTT------- ---------- bmy_04291T0/1-647 DKNQTAEKEE SEHQQKELEK VCNPIITKLY QSAGGMPGGM PGGMPRGFPG ENSP00000432083/1-646 DKNQTAEKEE FEHQQKELEK VCNPIITKLY QSA----GGM PGGMPGGFPG ENSTTRP00000010561/1-650 DKNQTAEKEE FEHQQKELEK VCNPIITKLY QSAGGMPGGM PGGMPGGFPG ENSBTAP00000017497/1-650 DKNQTAEKEE FEHQQKELEK VCNPIITKLY QSAGGMPGGM PGGMPGGFPG 801 850 BACU015546/1-777 -----KDGTE AMLVLK--- bmy_04291T0/1-647 GGAPPSGGAS SGPTIE--- ENSP00000432083/1-646 GGAPPSGGAS SGPTIEEVD ENSTTRP00000010561/1-650 GGAPPSGGAS SGPTIEEVD ENSBTAP00000017497/1-650 GGAPPSGGAS SGPTIEEVD