KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:38 2014 Check: 00 .. Name: ENSTTRP00000003264/1-425 Len: 449 Check: 4577 Weight: 1.00 Name: bmy_12257T0/1-398 Len: 449 Check: 5644 Weight: 1.00 Name: ENSP00000355924/1-433 Len: 449 Check: 4452 Weight: 1.00 Name: BACU006053/1-349 Len: 449 Check: 2766 Weight: 1.00 Name: ENSBTAP00000017516/1-433 Len: 449 Check: 2432 Weight: 1.00 // 1 50 ENSTTRP00000003264/1-425 --------LG RFXXXXXXXX XXXXXXXXXX XSLFSCPDYA YVLTINERGY bmy_12257T0/1-398 ---------L NLVKLSFGK- ----LPPISG RASFTFPCLS IL-------- ENSP00000355924/1-433 MRAEGLGGLE RFCSPGKGRG LRALQPFQVG DLLFSCPAYA YVLTVNERGN BACU006053/1-349 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017516/1-433 MRAEGDGGLE RFCSPGKGRG LRALQPFQVG DLLFSCPAYA YVLTVSERGN 51 100 ENSTTRP00000003264/1-425 HCEFCFARKE GLSKCGRCKQ AFYCNVECQX XXXXXXXXXX XXXXXXXXXX bmy_12257T0/1-398 QCPFCFLRKE GLSKCGRCKQ AFYCNVXCQR EDWPMHKLEC SPMVVLGENW ENSP00000355924/1-433 HCEYCFTRKE GLSKCGRCKQ AFYCNVECQK EDWPMHKLEC SPMVVFGENW BACU006053/1-349 ---------- ---------- ---------- ----MHKLEC SPMVVLGENW ENSBTAP00000017516/1-433 HCEFCFARKE GLSKCGRCKQ AFYCNVECQR EDWPMHKLEC SPMVVFGENW 101 150 ENSTTRP00000003264/1-425 XXXXXXXXXX XXXXXXKIHP ERTPSEKLLA VKEFESXXXX XXXXXXXXXX bmy_12257T0/1-398 NPSETVRLTA RLLAKQKIHP ERTPSEKLLA VKEFESHLDK LDNEKKNLIQ ENSP00000355924/1-433 NPSETVRLTA RILAKQKIHP ERTPSEKLLA VKEFESHLDK LDNEKKDLIQ BACU006053/1-349 NPSETVRLTA RILAKQKIHL ERTPSEKLLA VKEFESHLDK LDNEKKDLIQ ENSBTAP00000017516/1-433 NPSETVRLTA RILAKQKIHP ERTPSEKLLA VKEFESHLDK LDNEKRDLIQ 151 200 ENSTTRP00000003264/1-425 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12257T0/1-398 SDIAALHHFY SKHLEFPDNH SLVVLFAQVN CNGFTIEDEE LSHLGSAIFP ENSP00000355924/1-433 SDIAALHHFY SKHLGFPDND SLVVLFAQVN CNGFTIEDEE LSHLGSAIFP BACU006053/1-349 SDIAALHHFY SKHLEFPDNH SLVVLFAQVN CNGFTIEDEE LSHLGSAIFP ENSBTAP00000017516/1-433 SDIAALHHFY SKHLEFPDND SLVVLFAQVN CNGFTIEDEE LSHLGSAIFP 201 250 ENSTTRP00000003264/1-425 XVALMNHSCC PNVIVTYKGT LAEVRAVQEI HPGEEVFTSY IDLLYPTEDR bmy_12257T0/1-398 DVALMNHSCC PNVIVTYKGT LAEVRAVQEI HPGEEVFTSY IDLLYPTEDR ENSP00000355924/1-433 DVALMNHSCC PNVIVTYKGT LAEVRAVQEI KPGEEVFTSY IDLLYPTEDR BACU006053/1-349 DVALMNHSCC PNVIVTYKGT LAEVRAVQEI HPGEEVFTSY IDLLYPTEDR ENSBTAP00000017516/1-433 DVALMNHSCC PNVIVTYKGT LAEVRAVQEI HPGEEVFTSY IDLLYPTEDR 251 300 ENSTTRP00000003264/1-425 NDRLRDSYFF TCECQECTTK DKDKAKVEIR KLNDPPKAEA IRDMVRYARN bmy_12257T0/1-398 NDRLRDSYFF TCECQECTTK DKDKAKVEIR KLSDPPKAEA IRDMVRYARN ENSP00000355924/1-433 NDRLRDSYFF TCECQECTTK DKDKAKVEIR KLSDPPKAEA IRDMVRYARN BACU006053/1-349 NDRLRDSYFF TCECQECTTK DKDKAKVEIR KLSDPPKAEA IRDMVRYARN ENSBTAP00000017516/1-433 NDRLRDSYFF TCECQECTTK DKDKAKVEIR KLNDPPKAET IRDMVRYARN 301 350 ENSTTRP00000003264/1-425 VIEEFRRAKH YK-------- --------SP SELLEICELS QEKMSCVFED bmy_12257T0/1-398 VIEEFRRAKH YKYILYNHPS LTGGVGEAPP SELLEICELS QEKMSCVFED ENSP00000355924/1-433 VIEEFRRAKH YK-------- --------SP SELLEICELS QEKMSSVFED BACU006053/1-349 VIEEFRRAKH YK-------- --------SP SELLEICELS QEKMSCVFED ENSBTAP00000017516/1-433 VIEEFRRAKH YK-------- --------SP SELLEICELS QEKMSCVFED 351 400 ENSTTRP00000003264/1-425 SNVYMLHMMY QAMGVCLYMQ DWEGALRYGQ KIIQPYSKHY PLYSLNVASM bmy_12257T0/1-398 SNVYMLHMMY QAMGVCLYMQ DWEGALRYGR KIIHPYR--- ---------- ENSP00000355924/1-433 SNVYMLHMMY QAMGVCLYMQ DWEGALQYGQ KIIKPYSKHY PLYSLNVASM BACU006053/1-349 SNVYMLHMMY QAMGVCLYMQ DWEGALRYGR KIIQPYSKHY PLYSLNVASM ENSBTAP00000017516/1-433 SNVYMLHMMY QAMGVCLYMQ DWEGALRYGQ KIIQPYSKHY PLYSLNVASM 401 450 ENSTTRP00000003264/1-425 WLKLGRLYMG LENKAAGERA LKKAIAIMEV AHGKDHPYIS EIKQEIESH bmy_12257T0/1-398 FTAVG----- ---------- -KRAIAIMEV AHGKDHPYIS EIKQEIESH ENSP00000355924/1-433 WLKLGRLYMG LEHKAAGEKA LKKAIAIMEV AHGKDHPYIS EIKQEIESH BACU006053/1-349 WLKLGRLYMG LENKAAGERA LKKAIAIMEV AHGKDHPYIS EIKQEIESH ENSBTAP00000017516/1-433 WLKLGRLYMG LENKAAGERA LKKAIAIMEV AHGKDHPYIS EIKQEIESH