KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:41 2014 Check: 00 .. Name: ENSTTRP00000016451/1-304 Len: 325 Check: 6445 Weight: 1.00 Name: ENSP00000332983/1-309 Len: 325 Check: 6055 Weight: 1.00 Name: ENSBTAP00000017533/1-313 Len: 325 Check: 3152 Weight: 1.00 Name: bmy_01022T0/1-304 Len: 325 Check: 8550 Weight: 1.00 Name: BACU013424/1-256 Len: 325 Check: 5840 Weight: 1.00 // 1 50 ENSTTRP00000016451/1-304 MAVNRSHTEN RRWALIPFGE SVLKQSQDVD LSFLQQPVGY DLFNGTKRGT ENSP00000332983/1-309 MAVNQSHTEN RRGALIPNGE SLLKRSPNVE LSFPQRSEGS NVFSGRKTGT ENSBTAP00000017533/1-313 MAVNQSHTES RRGALIPSGE SVLKQCEDVD LCFLQKPVES YLFNGTKKGT bmy_01022T0/1-304 ---MNPH--- ---------- SVLKQSQDVD LSFLQQPVGS DLFNGTKRGT BACU013424/1-256 MAVNQSHSEN RRGALIPFGE SVLKQSQDVD LSFLQQPVGS DLFNGTKRGT 51 100 ENSTTRP00000016451/1-304 LFLTSYRVIF VTSHLVNDPM LSFMMPFGLM SNCTIQQPIF APNYIKGTIQ ENSP00000332983/1-309 LFLTSYRVIF ITSCSISDPM LSFMMPFDLM TNLTVEQPVF AANFIKGTIQ ENSBTAP00000017533/1-313 LFLTSYRVVF VTSHLVNDPM LSFMMPFGLM SDCTIEQPIF APNYIKGTIQ bmy_01022T0/1-304 LFLTSYRVIF VTSHLVNDPM LSFMMPLGLM SNCTIQQPIF APNFIKGTIQ BACU013424/1-256 LFLTSYRVIF VTSHLVNDPM LSFMMPFGLM SNCTIQQPIF APNYIKGTIQ 101 150 ENSTTRP00000016451/1-304 AAPDGGWEGQ AIFKLSFRKG GAIEFAQLLM KAASAXXXXX XXXXXXXXXX ENSP00000332983/1-309 AAPYGGWEGQ ATFKLVFRNG DAIEFAQLMV KAASAAARGF PLRTLNDWFS ENSBTAP00000017533/1-313 AAPGGGWEGQ AVFKLSFRKG GAIEFAQLMV KAASAAARGI PLGSVNYWFD bmy_01022T0/1-304 AAPDGGWEGQ AIFKLSFRKG GAIEFAQLMM KAASAAARGI PLGSVNYWFG BACU013424/1-256 AAPD------ ---------- ---------- -----AARGI PLGSVNYWFG 151 200 ENSTTRP00000016451/1-304 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000332983/1-309 SMGIYVITGE GN-MCTPQMP C---SVIVYG APPAGYGAPP PGYGAPPAGY ENSBTAP00000017533/1-313 TSGLYIITVP GAAVCSSQTP CPAYPIVIYG PPPPGYTVQP GEYGTPPEGY bmy_01022T0/1-304 TSGLYIITSP GDMMCTQQTP CPAYPVVVYR PPPPGYGAPP AGYRASPAGY BACU013424/1-256 TSGLYIITAP EGMMCTQQMP CPAYPVVVYR PPPPGYGAPP AGYGASPAG- 201 250 ENSTTRP00000016451/1-304 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXX------ ENSP00000332983/1-309 GAQPVGNEGP PVGYRASPVR YGAPPLGYGA PPAGYGAPPL GYGAPPLG-- ENSBTAP00000017533/1-313 GAQPGGYGAP PMGYGAPPVG YGVPPGGYGV PPGGYGVPPG GYGAPPGGYG bmy_01022T0/1-304 GAPPGGYGAP PGEYVAPPVG YEAPRGGYGA PPGGYGAPPG EYVAPPVGYE BACU013424/1-256 ---------- ---YVAPPVG YEAPRGGYGA PSAG------ ---------- 251 300 ENSTTRP00000016451/1-304 -----XXXXX XXXXXXXXXX XXXPAGNEAP P-AYES--AG NRAASHKSVA ENSP00000332983/1-309 -----YGTPP LGYGAPPLGY GAPPAGNEGP PAGYRASPAG SGARPQESTA ENSBTAP00000017533/1-313 VPPGGYGAPP GGYGAPPAGY GAPPAGNEAL PPAYEAPSAG NTAASHRSMT bmy_01022T0/1-304 APR--YGAPP VTYEALPAGY GAPPAGNEAP PPAYEAPPAG NRAASHKSVA BACU013424/1-256 -----YGTPP VTYEALPAGY GAPPAGNEAP PPAYEAPPAG NRAASYKSVA 301 350 ENSTTRP00000016451/1-304 AQP---EASL PSTSSSQAHL P---- ENSP00000332983/1-309 AQAPENEASL PSASSSQVHS ----- ENSBTAP00000017533/1-313 AQQ---ETSL PTTSSS---- ----- bmy_01022T0/1-304 AQP---EASL PSTSSSQAHL PPSKK BACU013424/1-256 AQP---EASL PSTSSSQAHL PPSKK