KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:42 2014 Check: 00 .. Name: ENSP00000299505/1-1070 Len: 1087 Check: 5794 Weight: 1.00 Name: ENSBTAP00000017535/1-1071 Len: 1087 Check: 6484 Weight: 1.00 Name: ENSTTRP00000012231/1-1061 Len: 1087 Check: 764 Weight: 1.00 Name: bmy_18150T0/1-567 Len: 1087 Check: 789 Weight: 1.00 Name: BACU000574/1-1076 Len: 1087 Check: 11 Weight: 1.00 // 1 50 ENSP00000299505/1-1070 MYCCSAQDSK MDYKRRFLLG GSKQKVQQHQ QYPMPELGRA LSAPLASTAT ENSBTAP00000017535/1-1071 MYCCSAQDSK MDYKRRFLLG GSKQKVQQHQ QYPMPELGRA LSAPLASTAT ENSTTRP00000012231/1-1061 MYCCSAQDSK MDYKRRFLLG GSKQKVQQHQ QYPMPELGRA LSAPLASTAT bmy_18150T0/1-567 ---------- ---------- ---------- ---------- ---------- BACU000574/1-1076 ---------- MDYKRRFLLG GSKQKVQQHQ QYPMPELGRA LSAPLASTAT 51 100 ENSP00000299505/1-1070 TAPLGSLTAA GSCHHAMPHT TPIADIQQGI SKYLDALNVF CRASTFLTDL ENSBTAP00000017535/1-1071 TTPLGSLTAA GSCHHAMPHS TPIADIQQGI SKYLDALNVF CRASTFLTDL ENSTTRP00000012231/1-1061 TAPLGSLTAA GSCHHAMPHS TPIADIQQGI SKYLDALNVF CRASTFLTDL bmy_18150T0/1-567 ---------- ---------- ---------- ---------- ---------- BACU000574/1-1076 TAPLGSLTAA GSCHHAMPHS TPIADIQQGI SKYLDALNVF CRASTFLTDL 101 150 ENSP00000299505/1-1070 FSTVFRNSHY SKAATQLKDV QEHVMEAASR LTSAIKPEIA KMLMELSAGA ENSBTAP00000017535/1-1071 FSTVFRNSHY SKAAMQLKDV QEHVMEAASR LTSAIKPEIA KMLMELSAGA ENSTTRP00000012231/1-1061 FSTVFRNSHY SKAAMQLKDV QEHVMEAASR LTSAIKPEIA KMLMELSAGA bmy_18150T0/1-567 ---------- ---------- ---------- ---------- ---------- BACU000574/1-1076 FSTVFRNSHY SKAAMQLKDV QEHVMEAASR LTSAIKPEIA KMLMELSAGA 151 200 ENSP00000299505/1-1070 ANFTDQKEFS LQDIE----- ---------- -VLGRCFLTV VQVHFQFLTH ENSBTAP00000017535/1-1071 ANLTDQKEFS LQDIE----- ---------- -VLGRCFLTV VQVHFQFLTQ ENSTTRP00000012231/1-1061 ANFTDQKEFS LQDIE----- ---------- -XXXXXXXXX XXXXXXXXXX bmy_18150T0/1-567 ---------- ---------- ---------- ---------- ---------- BACU000574/1-1076 ANFTDQKEFS LQDIEVEYLL CHTWVGKCIP EVLGRCFLTV VQVHFQFLTQ 201 250 ENSP00000299505/1-1070 ALQKVQPVAH SCFAEVIVPE KKNSGSGGGL SGMGHTPEVE EAVRSWRGAA ENSBTAP00000017535/1-1071 ALQKVQPVAH SCFAEVVVPE KKNSSSGGGL SGAGHTSELE EAVRSWRGAA ENSTTRP00000012231/1-1061 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXTPELE DAVRSWRGAA bmy_18150T0/1-567 ---------- ---------- ---------- ---------- ---------- BACU000574/1-1076 ALQKVQPVAH SCFAEVVVPE KKNSSSGGGL SGMGHTPELE EAVRSWRGAA 251 300 ENSP00000299505/1-1070 EATSRLRERG CDGCLAGIEV QQLFCSQSAA IPEHQLKELN IKIDSALQAY ENSBTAP00000017535/1-1071 EATSRLRERG CDGRLAGIEV QQLFCSQSAA IPEHQLKELN IKIDSALQAY ENSTTRP00000012231/1-1061 EATSRLRERG CDGRLAGIEV QQLFCSQSAA IPEHQLKELN IKIDSALQAY bmy_18150T0/1-567 ---------- ---------- ---------- ---------- ---------- BACU000574/1-1076 EATSRLRERG CDGRLAGIEV QQLFCSQSAA IPEHQLKELN IKIDSALQAY 301 350 ENSP00000299505/1-1070 KIALESLGHC EYAMKAGFHL NPKAIEASLQ GCCSEAEAQQ TGRRQTPPQP ENSBTAP00000017535/1-1071 KIALESLGHC EYAMKAGFHL NPKAIEASLQ GCCSEAEAQQ TGRRQTPPQP ENSTTRP00000012231/1-1061 KIALESLGHC EYAMKAGFHL NPKAIEASLQ GCCSEAEAQQ TGRRQTPPQP bmy_18150T0/1-567 ---------- ---------- ---------- ---------- ---------- BACU000574/1-1076 KIALESLGHC EYAMKAGFHL NPKAIEASLQ GCCSEAEAQQ TGRRQTPPQP 351 400 ENSP00000299505/1-1070 MQCELPTVPV QIGSHFLKGV SFNESAADNL KLKTHTMLQL MKEAGCYNGI ENSBTAP00000017535/1-1071 MQCELPTVPV QIGSSFLKGV SFNESAADNL KLKTHTMLQL IKEAGCYNGM ENSTTRP00000012231/1-1061 MQCELPTVPV QIGSNFLKGV SFNESATDNL KLKTHTMLQL IKEAGCYNGI bmy_18150T0/1-567 ---------- ---------- ---------- ---------- ---------- BACU000574/1-1076 MQCELPTVPV QIGSNFLKGV SFNESAADNL KLKTHTMLQL IKEAGCYNGI 401 450 ENSP00000299505/1-1070 TSRDDFPVTE VLNQVCPSTW RGACKTAVQL LFGQAGLVVV DTAQIENKEA ENSBTAP00000017535/1-1071 TPRDDFPVTE VLNQVCPSTW RGACKTAVQL LFGQAGLVVV DTAQIENKEA ENSTTRP00000012231/1-1061 TPRDDFPVTE VLNQVCPSTW RGACKTAVQL LFGQAGLVVV DTAQIENKEA bmy_18150T0/1-567 ---------- ---------- ---------- ---------- ---------- BACU000574/1-1076 TPRDDFPVTE VLNQVCPSTW RGACKTAVQL LFGQAGLVVV DTAQIENKEA 451 500 ENSP00000299505/1-1070 YAPQISLEGS RIVVQVPSTW CLKEDPATMS LLQRSLDPEK TLGLVDVLYT ENSBTAP00000017535/1-1071 YAPQISLEGS RIVVQVPSTW CLKEDPATMS LLQRSLDPEK TLGLVDVLYT ENSTTRP00000012231/1-1061 YAPQISLEGS RIVVQVPSTW CLKEDPATMS LLQRSLDPEK TLGLVDVLYT bmy_18150T0/1-567 ---------- ---------- --------MS LLQRSLDPEK TLGLVDVLYT BACU000574/1-1076 YAPQISLEGS RIVVQVPSTW CLKEDPATMS LLQRSLDPEK TLGLVDVLYT 501 550 ENSP00000299505/1-1070 AVLDLNRWRA GREQALPCIQ IQLQREICDF GNQADLPSGN GNKSSGGLQK ENSBTAP00000017535/1-1071 AVLDLTRWRA GREQALPCIQ IQLQREICDF GNQADLPSGN GNKSSGGLQK ENSTTRP00000012231/1-1061 AVLDLTRWRA GREQALPCIQ IQLQREICDF GNQADLPSGN GNKSSGGLQK bmy_18150T0/1-567 AVLDLTRWRA GREQALPCIQ IQLQREICDF GNQADLPSGN GNKSSAG--- BACU000574/1-1076 AVLDLTRWRA GREQALPCIQ IQLQREICDF GNQADLPSGN GNKSSGGLQK 551 600 ENSP00000299505/1-1070 TFSKLTSRFT KKASCTSSSS STNYSIQNTP SKNIFIAGCS EEKAKMPGNI ENSBTAP00000017535/1-1071 TFSKLTSRFT KKASCPSSSS NTSYSIPNTP SKNIFIAGCS EEKAKMPTNM ENSTTRP00000012231/1-1061 TFSKLTSRFT KKASCTSSSS STNYSIPNTP SKNIFIAGCS EEKAKMPSNT bmy_18150T0/1-567 ---------- ---------- ---------- --------CS EEKAKMPSNI BACU000574/1-1076 TFSKLTSRFT KKASCTSSSS STNYSIPNTP SKNIFIAGCS EEKAKMPSHI 601 650 ENSP00000299505/1-1070 DTRLQSILNI GNFPRTTDPS QSAQNSSNTV ANGFLMERRE NFLHGDDGKD ENSBTAP00000017535/1-1071 DSRLQSILNI GNFPRTADPS QSAQNSSNHM ANGFLLERRD NFLQGDDGKD ENSTTRP00000012231/1-1061 DSRLQSILNI GNFPRTADPS QSAQNSSNQM ANGFLMERHD SFVQGDDGKD bmy_18150T0/1-567 DSRLQSILNI GNFPRTADPS QSAQNSSNQM ANGFLMERHD NFLQGDDGKD BACU000574/1-1076 DSRLQSILNI GNFPRTADPS QSAQNSSNQM ANGFLMERHD NFLQGDDGKD 651 700 ENSP00000299505/1-1070 EKGMNLPTDQ EMQEVIDFLS GFNMGQSHQG SPLVTRHNSA ATAMVTEQKA ENSBTAP00000017535/1-1071 EKGMNLPTDQ EMQEVIDFLS GFNMGQSHQG SPLVTRRNSA ATAMVTEQKA ENSTTRP00000012231/1-1061 EKGMNLPTDQ EMQEVIDFLS GFNMGQSHHG SPLVTRRNSA AIAMVTEQKR bmy_18150T0/1-567 EKGMNLPTDQ EMQEVIDFLS GFNMGQSHQG SPLVTRRNSA ATAMVTEQKA BACU000574/1-1076 EKGMNLPTDQ EMQEVIDFLS GFNMGQSHQG SPLVTRRNSA ATAVVTEQKA 701 750 ENSP00000299505/1-1070 GAMQPQQPSL PVPPPPRAPQ AGAHTPLTPQ PGLAPQQQSP KQQQPQVQYY ENSBTAP00000017535/1-1071 GAMQPQQPSL PVPPPSRPPQ AGAHTPLTPQ PGLAPQQQSP KQQQPQVQYY ENSTTRP00000012231/1-1061 -AMQPQQPSL PVPPP-RPPQ TRAHTPLTQ- ----PAQQQP KQQQPQVQYY bmy_18150T0/1-567 GAMQPQQPSL PVPPPPRPPQ ARAHTPLTPQ PGLAPQQQSP KQQQPQVQYY BACU000574/1-1076 GAMQPQQPSL PVPPPPRPPQ ARAHTPLTPQ PGLAPQQQSP KQQQPQVQYY 751 800 ENSP00000299505/1-1070 QHLLQPIGPQ QPPPQPRAPG KWVHGSSQQP AQAVGAGLSP LGQWPGISDL ENSBTAP00000017535/1-1071 QHLLQPVGPQ QPPPQPRAPG KWVPGSSQQP AQPVGAGLSP LGQWPGISDL ENSTTRP00000012231/1-1061 Q-LLQPVGPQ QPLPQHRAPG KWVHGSSQQP TQPIGAGLSP LGQWPGISDL bmy_18150T0/1-567 QHLLQPVGPQ QPLPQHRAPG KWVHGSSQQP TQPIAAGLSP LGQWPGITDL BACU000574/1-1076 QHLLQPVGPQ QPLPQHRAPG KWVHSSSQQP TQPIGAGLSP LGQWPGITDL 801 850 ENSP00000299505/1-1070 SSDLYSLGLV SSYMDNVMSE VLGQKPQGPR NNTWPNRDQS DGVFGMLGEI ENSBTAP00000017535/1-1071 SSDLYSLGLV SSCLDDVMSE VLGQKAQGPR NNTWPNRDQS DGVFGMLGEI ENSTTRP00000012231/1-1061 SSDLYSLGLV SSYMDNVMSE VLGQKPQGPR NNTWPNRDQS DGVFGMLGEI bmy_18150T0/1-567 SSDLYSLGLV SSYMDNMMSE VLGQKPQGPR NNTWPNRDQS DGVFGMLGEI BACU000574/1-1076 SSDLYSLGLV SSYMDNMMSE VLGQKPQGPR NNTWPNRDQS DGVFGMLGEI 851 900 ENSP00000299505/1-1070 LPFDPAVGSD PEFARYVAGV SQAMQQKRQA QHGRRPGNPR GNWPPMDDAH ENSBTAP00000017535/1-1071 LPFDPAVGSD PEFARYVAGV SQAMQQKRQV QHGRRPGNPR GHWPPMDDAH ENSTTRP00000012231/1-1061 LPFDPAVGSD PEFARYVAGV SQAMQQKRQV QHGRRPGNPR GHWPPMDDAH bmy_18150T0/1-567 LPFDPAVGSD PEFARYVAGV SQAMQQKRQV QHGRRPGNPR GHWPPMDDAH BACU000574/1-1076 LPFDPAVGSD PEFARYVAGV SQAMQQKRQV QHGRRPGNPR GHWPPMDDAH 901 950 ENSP00000299505/1-1070 RTWPFPEFFT EGDGLHGGWS GAQGDSASSS DETSSANGDS LFSMFSGPDL ENSBTAP00000017535/1-1071 RTWPFPEFFA EGDGLHSGWA GAQGDSASSS DETSSANGDS LFSMFSGPDL ENSTTRP00000012231/1-1061 RTWPFPEFFA EGDGLHSGWS GAQGDSASSS DETSSANGDS LFSMFSGPDL bmy_18150T0/1-567 RTWPFPEFFA EGDGLHSGWS GAQGDSASSS DETSSANGDS LFSMFSGPDL BACU000574/1-1076 RTWPFPEFFA EGDGLHSGWS GAQGDSASSS DETSSANGDS LFSMFSGPDL 951 1000 ENSP00000299505/1-1070 VAAVKQRRKH SSGEQDTSTL PSPPLLTTVE DVNQDNKTKT WPPKAPWQHP ENSBTAP00000017535/1-1071 VAAVKQRRKH SSGEQETSAL PSPPLLTAVE DVNQDNKTKT WPPKAPWQHP ENSTTRP00000012231/1-1061 VAAVKQRRKH SSGEQETSTL PSPPLLTTVE DVNQDNKTKT WPPKAPWQHP bmy_18150T0/1-567 VAAVKQRRKH SSGEQETSTL PSPPLLTTVE DVNQDNKTKT WPPKAPWQHP BACU000574/1-1076 VAAVKQRRKH SSGEQETSTL PSPPLLTTVE DVNQDNKTKT WPPKAPWQHP 1001 1050 ENSP00000299505/1-1070 SPLPSTLPSP SAPLYAVTSP GSQWNDTMQM LQSPVWAATN DCS-AAAFSY ENSBTAP00000017535/1-1071 SPLPSTLPGP SAPLYAVASP GSQWSDTMQM LQSPVWAATS DCSAAASFAY ENSTTRP00000012231/1-1061 SPLPSTLPGP SAPLYAVASP GSQWNDTMQM LQSPVWAATS DCS-AASFTY bmy_18150T0/1-567 SPLPSTLPGP SAPLYAVASP GSQWNDTMQM LQSPVWAATS DCS-AASFTY BACU000574/1-1076 SPLPSTLPGP SAPLYAVASP GSQWNDTMQM LQSPVWAATS DCS-AASFTY 1051 1100 ENSP00000299505/1-1070 VQTPPQPPPP PAHKAAPKGF KAFPGKGERR PAYLPQY ENSBTAP00000017535/1-1071 VQTPPQPPPP PAHKAAPKGF KAFPGKAERR PAYLPQY ENSTTRP00000012231/1-1061 VQTPPQPAPP PAHNAAPKGF KAFPGKAE-R PAYLPQY bmy_18150T0/1-567 VQTPPQPAPP PAHKAAPKGF KAFPGKAERR PAYLPQY BACU000574/1-1076 VQTPPQPAPP PAHKAAPKGF KAFPGKAERR PAYLPQY