KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:44 2014 Check: 00 .. Name: ENSP00000377369/1-488 Len: 652 Check: 1299 Weight: 1.00 Name: ENSTTRP00000012564/1-540 Len: 652 Check: 7261 Weight: 1.00 Name: ENSBTAP00000017544/1-479 Len: 652 Check: 4421 Weight: 1.00 Name: bmy_03499T0/1-517 Len: 652 Check: 4028 Weight: 1.00 Name: BACU010836/1-480 Len: 652 Check: 8781 Weight: 1.00 // 1 50 ENSP00000377369/1-488 MHIQFPSKPT LPRACWEGRI TAGSPGMPPD EIEIEPVRQS SDKMLYCEAE ENSTTRP00000012564/1-540 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017544/1-479 MDNDEPLEPE ---------- -------TKD ESDSVSALQS SNETLYCEAE bmy_03499T0/1-517 MDNDDPLEPE ---------- -------TKD ESDTVLARQS SDETLYCEAE BACU010836/1-480 MDNDDPLEPE ---------- -------TKD ESDTVSARQS SDETLYCEAE 51 100 ENSP00000377369/1-488 SPPTVEKVKP ARENSETDLE IE-DDEKFFT TGQKELYLEA CKLMGVVPVS ENSTTRP00000012564/1-540 ---------- ---------- ---------- ---------- ---VGVVPVS ENSBTAP00000017544/1-479 APVAVEKEKP ARESSETDLE IEADTEKFFT TGQKELYLEA CKLVGVVPVS bmy_03499T0/1-517 APMAVEKEKP ARESSETDLE IE-DTEKFFT TGQRELYLEA CKLVGVAPVS BACU010836/1-480 APMAVEKEKP ARESSETDLE IE-DTEKFFT TGQRELYLEA CKLVGVVPVS 101 150 ENSP00000377369/1-488 YFIRNMEESY VNLNHHGLGP RGTKAIAIAL VSNMAVTKLE LEDNCIMEEG ENSTTRP00000012564/1-540 YFIRNMEESY VNLNHRGLGP RGTKAIAIAL VSNTSVLTLE LADNSITEEG ENSBTAP00000017544/1-479 YFIRNMEESY INLNHHGLGP NGTKAIAIAL VSNTTVLTLE LADNCITEEG bmy_03499T0/1-517 YFIRNMEESY VNLNHHGLGP RGTKAIAIAL VSNTTVVTLE LADNCITEEG BACU010836/1-480 YFIRNMEESY VNLNHHGLGP RGTKAIAIAL VSNTTVVTLE LADNCITEEG 151 200 ENSP00000377369/1-488 VLSLVEMLQE NYYLQEM--- ---------- ---------- -------NIS ENSTTRP00000012564/1-540 ILSLVEMLQE NYYLQEMVLC PV-------- -----LPVPT TMLRVSEPSS ENSBTAP00000017544/1-479 ILSLVEMLQE NYYLQEM--- ---------- ---------- -------NVS bmy_03499T0/1-517 XLSLVEMLQE NYYLQEMFLQ PCLESQNTLQ TSQSPLPEPR PASRLSANIS BACU010836/1-480 ILSLVEMLQE NYYLQEM--- ---------- ---------- -------NIS 201 250 ENSP00000377369/1-488 NNHLGLEGAR IISDFFERNS SSIWSLELSG NDFKEDSAAL L--------- ENSTTRP00000012564/1-540 EKPASLPEAR PAPGFCNQ-- ----SLPSPG SNFSEEVHTI FPTMILVWRG ENSBTAP00000017544/1-479 DNDLGLEGAR ILSEFLQNNT SSLFSLQLSG NNFKEESAEL F--------- bmy_03499T0/1-517 DNDLGLEGAR ILSEFLQNNT SSLFSLQLSG NNFKEESAEL F--------- BACU010836/1-480 DNDLGLEGAR ILSEFLQNNT SSLFSLQLSG NNFKEESAEL F--------- 251 300 ENSP00000377369/1-488 ---------- -----CQALS TNYQIKKLDL SHNQFSDVGG EHLGQMLAIN ENSTTRP00000012564/1-540 PESSVSSSRT PLRSLVFSFX TNYRIKSLDL SHNQFSDKAG EYLGQMLALN ENSBTAP00000017544/1-479 ---------- -----CQALS NNYRIKSLDL SHNKFCDKAG EYLGQMLAIN bmy_03499T0/1-517 ---------- -----CQALS TNYRIKSLDL SHNQFSDKAG EYLGQMLALN BACU010836/1-480 ---------- -----CQALS TNYRIKSLDL SHNQFSDKAG EYLGQMLALN 301 350 ENSP00000377369/1-488 VGLTSLDLSW NNFHTRGAVA LCNGLRGNVT LTKLDLSMNG FGNEVALALG ENSTTRP00000012564/1-540 VGLQSLDLSW NHLYIQGVVA LCSGLRANVS LKKLDLSMNS FGNEGAAALG ENSBTAP00000017544/1-479 VGLQSLDLSW NHLYIRGVVA LCNGLRSNVS LKKLDLSMNS FGNEGAAALG bmy_03499T0/1-517 VGLQSLDLSW NHLYIQGVVA LCSGLRANVS LKKLDLSMNS FGNEGAAALG BACU010836/1-480 VGLQSLDLSW NHLYIQGAVA LCSGLRANAS LKKLDLSMNS FGNEGAAALG 351 400 ENSP00000377369/1-488 EVLRLNRCLV YLDIGGNDIG NEGASKISKG LESNESLRVL KLFLNPINMD ENSTTRP00000012564/1-540 EVLRLNNSLA YLDLSSNNIN NEGLSKISKG LELNESLKVL KLYLNPLSMD ENSBTAP00000017544/1-479 EVLRLNSYLT YLDLSSNNIT NDGLSKISRA LELNESLKVL KLFLNPISMD bmy_03499T0/1-517 EVLRLNNSLA YLDLSSNNIS NEGLSKISKG LELNESLKVL KLYLNPLSMD BACU010836/1-480 EVLRLNNSLA YLDLSSNNIS NEGLSKISKG LELNESLKVL KLYLNPLSMD 401 450 ENSP00000377369/1-488 GAILLILAIK RNPKSRMEEL DIS------- ---------- ---------- ENSTTRP00000012564/1-540 GAVLLILSIK RNPKSKMEDI DISXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000017544/1-479 GAVLLILSIK RNPKSRMEDI DIS------- ---------- ---------- bmy_03499T0/1-517 GAXLLILSIK RNPKSKMEDI DIS------- ---------- ---------- BACU010836/1-480 GAVLLILSIK RNPKSKMEDI DIS------- ---------- ---------- 451 500 ENSP00000377369/1-488 ---------- ---------- ---------- ----NVLVSE QFMKTLDGVY ENSTTRP00000012564/1-540 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXNVLVSE QFVKILDGVC ENSBTAP00000017544/1-479 ---------- ---------- ---------- ----NVLVSE QFVKILDGVC bmy_03499T0/1-517 ---------- ---------- ---------- ----NVLVSE QFVKILDGVC BACU010836/1-480 ---------- ---------- ---------- ----NVLVSE QFVKILDGVC 501 550 ENSP00000377369/1-488 AVHPQLDVVF KAVQGLSPKK TIFLLTNPMK LIQSYADQHK ITIVDFFKSL ENSTTRP00000012564/1-540 AIHPQLDVMY KAVQGLSNKK NLFMWTNPVK LIQSYADQHK ISVLDFFRSL ENSBTAP00000017544/1-479 AIHPQLDVIY KSVQAPSAKK TLFTWTNPVK LIQSYADQNK ISVLDFFRSL bmy_03499T0/1-517 AVHPQLDVMY KAVQGLSNKK NLFTSMSPVK LIQSYADQHK ISVLDFFRSL BACU010836/1-480 AVHPQLDVMY KAVQGLSNKK NLFTWTSPVK LIQSYADQHK ISVLDFFRSL 551 600 ENSP00000377369/1-488 NPTGTMKMSV DEFQKVMIEQ NKVPLNQYQV REVIKKLDEK TGMVNFSF-- ENSTTRP00000012564/1-540 NPRGGTTMPV GEFRKAMIQQ NKVPINRYQV RELIKKLGEK TDMVDFRRHT ENSBTAP00000017544/1-479 NPSGEMMMPV GEFRKAMIQQ NKVPINRYQV RELIKKLGEK TGMVDFRK-- bmy_03499T0/1-517 NPSGETTMPV GEFRKAMIQQ NKVPVNRYQV RELIKKLGEK TDMVDFRS-- BACU010836/1-480 NPSGETTMPV GEFRKAMIQQ NKVPVNRHQV RELIKKLGEK TDMVDFRK-- 601 650 ENSP00000377369/1-488 ---------- ---------- ---------- -LNTMKP--- ---------- ENSTTRP00000012564/1-540 ANGALVVLPH SLLPHLRPPP SASLTWRSHR TLTQLQLLLV RVRPCAELSV ENSBTAP00000017544/1-479 ---------- ---------- ----AWSQVL AARKGQL--- ---------- bmy_03499T0/1-517 ---------- ---------- ----ARPRRP ALSGLHFCPG QAPGSL---- BACU010836/1-480 ---------- ---------- ----AQNQVL VARKGQLWP- ---------- 651 700 ENSP00000377369/1-488 -- ENSTTRP00000012564/1-540 SL ENSBTAP00000017544/1-479 -- bmy_03499T0/1-517 -- BACU010836/1-480 --