KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:44 2014 Check: 00 .. Name: ENSP00000274532/1-378 Len: 413 Check: 2918 Weight: 1.00 Name: bmy_14771T0/1-274 Len: 413 Check: 9911 Weight: 1.00 Name: ENSBTAP00000017547/1-340 Len: 413 Check: 9971 Weight: 1.00 Name: BACU000774/1-384 Len: 413 Check: 6310 Weight: 1.00 Name: ENSTTRP00000000554/1-371 Len: 413 Check: 4000 Weight: 1.00 // 1 50 ENSP00000274532/1-378 MSKEPLILWL MIEFWWLYLT PVTSETVVTE VLGHRVTLPC LYSSWSHNSN bmy_14771T0/1-274 VFVCLLVCFI LLGVKRPA-- PAASEIVVRA FLGQSVTLPC MYSSWSPNSN ENSBTAP00000017547/1-340 MSKGPLILWL VIELGRLCLT PAASQTVVRA FLGQPVTLPC TYSSWSPNSN BACU000774/1-384 MSKGPLILWL VIELGRLYLT PAASEIVVRA FLGQSVTLPC MYSSWSPNSN ENSTTRP00000000554/1-371 MSKGPLILWL VIELQRLYLT PAVSESVVRA FWGQSVTLPC TYSSWSPKSN 51 100 ENSP00000274532/1-378 SMCWGKDQCP YSGCKEALIR TDGMRVTSRK SAKYRLQGTI PRGDVSLTIL bmy_14771T0/1-274 IMCWGKGQCP NSKCNDELLY TNGKRVVSRK SPKYQLLGNI WRGDISLTIF ENSBTAP00000017547/1-340 SMCWGRGQCP KSKCNDELLY TDGTKVVSSK SPKYQLRGII QRGDVSLTIM BACU000774/1-384 IMCWGKGQCP NSKCNDELLY TDGTRVVSRK SPKYQLLGNI RRGDISLTIF ENSTTRP00000000554/1-371 SMCWGKGQCP NSKCNDELLY TDGRRVVSRK LPKYQLLGNI RRGDVSLTIF 101 150 ENSP00000274532/1-378 NPSESDSGVY CCRIEVPGWF NDVKINVRLN LQR------- ---------- bmy_14771T0/1-274 NTNEGDSGVY CCRIEVPGWF NDVKKNIRLE LRR------- ---------- ENSBTAP00000017547/1-340 DTNEGDQNVY CCRIEVPGWF NDVKRNIRLD LRR------- ---------- BACU000774/1-384 NTNEGDSGVY CCRIEVPGWF NDVKKNIRLE LRRGEHTGAV SVDGEVHESR ENSTTRP00000000554/1-371 NTNEGDSGVY CCRIEVPGWF NDVKRNIRLE LR-------- ---------- 151 200 ENSP00000274532/1-378 ------ASTT THRTA---TT TTRRTTTT-- -SPTTTRQMT TTPAALP-TT bmy_14771T0/1-274 ------GPTT TR------ST TTRRPTTT-- ----TTTAVT TTTAVLPTTT ENSBTAP00000017547/1-340 ------APTT TP------ST TTRRPTTTTT TTVATTTAMT TATAMLP-TT BACU000774/1-384 VLESVGGPTT TR------ST TTRRPTTT-- ----TTTAVT TTTAVLPTTT ENSTTRP00000000554/1-371 ------GPTT TRSTTTHRST TTHRPTTA-A TTRQTTAVLP TTTAVLPTTT 201 250 ENSP00000274532/1-378 VVTTPDLTTG TPLQM-TTIA VFTTANTCLS LTPSTLPEEA TGLLTPEPSK bmy_14771T0/1-274 VVPTPDLPAT PPLQMRTTAA LPTTAAACPL TTQGSLHEED TTLLTLEPST ENSBTAP00000017547/1-340 VVTTSDLTST PPLQMRTTAA LTTTASMCPL TTLSSLLEED TILLTLEPST BACU000774/1-384 VVPTPDLPDT PPLQMRTTAA LPTTAAACPL TTRGSLHEED TILLTLEPST ENSTTRP00000000554/1-371 VVPTPDLPAT PPLQMRTAAA LTTTAATCPL TTRESLREED TILLTLEPST 251 300 ENSP00000274532/1-378 EGPILTAESE TV-LPSDSWS SVESTS-ADT VLLTSKESKV WDLPSTSHVS bmy_14771T0/1-274 EGPILTA--- ---------- ---------V SIFGS----- ---------- ENSBTAP00000017547/1-340 EGPTLTAELE PALLPRTSQR SVEETSHRST ALLTSK---- ---------- BACU000774/1-384 EGPILTAESE TVLLPRTSQR STEATS-ADT ALLTSKGSKS WVLQSTHQAL ENSTTRP00000000554/1-371 EGPILTADSE TVLLPRTSQR STEATS-ADT ALLTSKGSKS WVLQSTRQAL 301 350 ENSP00000274532/1-378 MWKTSDSVSS PQPGASDTAV PEQNKTTKTG QMDGIPMSMK NEMPISQLLM bmy_14771T0/1-274 ---------- ---------- ---------- --------LV DL---PGVLG ENSBTAP00000017547/1-340 ---------- ----TPETSF LVQN------ EVEPEQIRMT SN---YDLLI BACU000774/1-384 MQEASDSVIS -HPRASETPF LVPN------ GFESEQIKMT NN---YNLLK ENSTTRP00000000554/1-371 MREASDSVVS -QPGASETPF LVQN------ GFESEQIKMT NN---YNLLM 351 400 ENSP00000274532/1-378 IIAPSLGFVL FALFVAFLLR GKLMETYCSQ KHTRLDYIGD SKNVLNDVQH bmy_14771T0/1-274 TLSKEPGNVT L--------- GQTPVPSC-- ---------R GLSPYS---- ENSBTAP00000017547/1-340 IIAPSLGFVL LALLLAFFLR GKFVKANCFQ KHTRLDNVGE GKDVLS---- BACU000774/1-384 IIAPSLGFVL LALLLAFFLR GKVMETNCVQ KHTRLDSVGE GKNVLD---- ENSTTRP00000000554/1-371 IIAPSLGFVL LALLLAYFFR GKVMKTNCVQ KHTRLDSAGE GKNVLD---- 401 450 ENSP00000274532/1-378 GRED--EDGL FTL bmy_14771T0/1-274 GIRDWLRKGL QMP ENSBTAP00000017547/1-340 GTED--EDGL FTL BACU000774/1-384 GRED--EDGL FTL ENSTTRP00000000554/1-371 EREN--EDGL FTL