KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:01:45 2014 Check: 00 ..
Name: ENSP00000375069/1-540 Len: 651 Check: 7328 Weight: 1.00
Name: ENSBTAP00000017548/1-398 Len: 651 Check: 6616 Weight: 1.00
Name: ENSTTRP00000010067/1-541 Len: 651 Check: 297 Weight: 1.00
Name: bmy_13645T0/1-616 Len: 651 Check: 5942 Weight: 1.00
Name: BACU002893/1-247 Len: 651 Check: 7858 Weight: 1.00
//
1 50
ENSP00000375069/1-540 MGPGERAGGG GDAGKGNAAG GGGGGRSATT AGSRAVSALC LLLSVGSAAA
ENSBTAP00000017548/1-398 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000010067/1-541 MSPGQ--GAG GDARKGCRTG GGGGGRPATA AGAWAVSALC LLLSAGSAAA
bmy_13645T0/1-616 VARGP-ITNP FPLSLPRAGR AKASGRPSEE ASLWRPEPLP LRLRVMLGPI
BACU002893/1-247 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000375069/1-540 CLLL---GVQ AAALQGRVAA LEEEREL--L RRAGPPGALD AWA--EPHLE
ENSBTAP00000017548/1-398 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000010067/1-541 CLLL---GVQ AAALQGRVAA LEEEREL--L WRAGSPDTLV AWA--EPQLE
bmy_13645T0/1-616 SFREFKGKME LLGLQGPQDP LGPGALLATL GKMAPGEHQA QWARVDPQGP
BACU002893/1-247 ---------- ---------- ---------- ---------- ----------
101 150
ENSP00000375069/1-540 RLLREKLDGL AKIRTAREAP SECVCPPGPP GRRGK----- --PGRRGDPG
ENSBTAP00000017548/1-398 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000010067/1-541 RLLREKMEGP VKLRTVREAP TDCVCPPGPP GRRGK----- --PGRRGDPG
bmy_13645T0/1-616 RGMMGHQASQ GSQDPQGPSP LGCTEPTAPN PRVGSGTFSG TTPEAHRPRR
BACU002893/1-247 ---------- ---------- ---------- ---------- ----------
151 200
ENSP00000375069/1-540 PPGQSGRDGY PGPLGLDGKP GLPGPKGEKG APGDFGPR-- --------GD
ENSBTAP00000017548/1-398 ---------F QGPLGLDGKP GLPGPKGEKG APGDFGPQ-- --------GD
ENSTTRP00000010067/1-541 PPGQSGRDGY PGPLGLDGKP GLPGPKGEKG APGDFGPR-- --------GD
bmy_13645T0/1-616 PPACPSALSQ HTPL-LQGKP GSAGPQGENG VDRAPGPKVT SQSTALLPKG
BACU002893/1-247 ---------- ---------- ---------- ---------- ----------
201 250
ENSP00000375069/1-540 QGQDGAAGPP GPPGPPGARG PPG-----DT GKDGPRG--A QGPAGPKGEP
ENSBTAP00000017548/1-398 PGQDGAAGPP GPPGPPGARG PPG-----DT GKDGPRG--A PGPEGPKGEA
ENSTTRP00000010067/1-541 QGQDGAAGPP GPPGPPGARG PPG-----DT GKDGPRG--A PGPVGAKGEA
bmy_13645T0/1-616 PSRGEMVSPP ICPFKLGVRE VPGPGVLFDW QSEAHLGPWA SGPQWPISTQ
BACU002893/1-247 ---------- ---------- ---------- ---------- ----------
251 300
ENSP00000375069/1-540 GQDGEMGPKG PPGPKGEPGV PGKKGDDGTP SQPG---PPG PKGEPGSMGP
ENSBTAP00000017548/1-398 GQGGATGPSG PPGPKAKPSV SGKKGDDGIP GQPGLSGPPG PKASQGAKGP
ENSTTRP00000010067/1-541 GQDGETGPSG PPGPKGEPSV PGKKGDDGTP GQPGLPGPSG PKGKPGSAGP
bmy_13645T0/1-616 -QGSEEGLSG PPSGSPIPGM P------VTS TWPCVLWVRG HWRGQGNFWL
BACU002893/1-247 ---------- ---------- ---------- ---------- ----------
301 350
ENSP00000375069/1-540 RGENGVDGAP GPKGEPGHRG TDGAAGPRGA PGLKGEQGDT VVIDYDGRIL
ENSBTAP00000017548/1-398 QVENGTDRAQ GPKGEPGHPG TDGATGQRGP PGLKGEQGDT VVIDYDGRIL
ENSTTRP00000010067/1-541 QGENGVDRAL GPKGEPGQPG ADGATGPRGA PGLKGEQGDT VVIDYDGRIL
bmy_13645T0/1-616 QPCTPGCNHA SSQGEPGQPG AYGATGPRGP PGLKGEQGDT VVIDYDGRIL
BACU002893/1-247 ---------- ---------- ---------- ---------- ----------
351 400
ENSP00000375069/1-540 DALKGPPGPQ GPPGPPGIPG AKGELGLPGA PGIDGEKGPK GQKGDPGEPG
ENSBTAP00000017548/1-398 DALKGPPGPQ GPPGPPGIPG AKGELGLPGA PGIDGEKGPK GQKGDPGEAG
ENSTTRP00000010067/1-541 DALMGPPGPQ GPPGPPGIPG AKGELGLPGA PGIDGEKGPK GQKGDPGEAG
bmy_13645T0/1-616 DALMGPPGPQ GPPGPAGIPG AKGELGLPGA PGIDGEKGPK GQKGDPGEAG
BACU002893/1-247 ---MGPPGPQ GPPGPAGIPG AKGELGLPGA PGIDGEKGPK GQKGDPGEAG
401 450
ENSP00000375069/1-540 PAGLKGEAGE MGLSGLP--- ---------- ----GADGLK GEKGESASDS
ENSBTAP00000017548/1-398 PTGPKGEAGE MGLSGLP--- ---------- ----GANGPK GEKGESASDK
ENSTTRP00000010067/1-541 PIGPKGEAGE MGLSGLP--- ---------- ----GADGPK GEKGDPASDN
bmy_13645T0/1-616 LIGPKGEAGE MGLSGLPVRG WVGLTLLAPC RGPKGADGPK GEKGEPASDN
BACU002893/1-247 LIGPKGEAGE MGLSGLP--- ---------- ----GADGPK GEKGEPASDN
451 500
ENSP00000375069/1-540 LQESL----- ---------- ---------- ---------A QLIVEPGPPG
ENSBTAP00000017548/1-398 LQESL----- ---------- ---------- ---------A QIIAEPGPPG
ENSTTRP00000010067/1-541 LQESL----- ---------- ---------- ---------A QIIVEPGPPG
bmy_13645T0/1-616 LQESLASTGP PTRQCPPGGS RELGAHTQGV LLQCPMNSSA QIIVEPGPPG
BACU002893/1-247 LQESL----- ---------- ---------- ---------A QIIVEPGPPG
501 550
ENSP00000375069/1-540 PPGPPGPMGL QGIQGPKGLD GAKGEKGASG ERGPSGLPGP VGPPGLIGLP
ENSBTAP00000017548/1-398 PPGPPGPMGL QGMQGPKGLD GAKGEKGSSG ERGPTGLPGP AGPPGLIGLP
ENSTTRP00000010067/1-541 PPGPPGPMGL QGIQGPKGLD GAKGEKGMSG ERGSSGLPGP AGPPGLIGLP
bmy_13645T0/1-616 PPGPPGPMGL QGIQGPKGLD GAKGEKGMSG ERGPSGLPGP AGPPGLIGLP
BACU002893/1-247 PPGPPGPMGL QGIQGPKGLD GAKGEKGMSG ERGPSGLPGP AGPPGLIGLP
551 600
ENSP00000375069/1-540 GTKGEKGRPG EPGLDGFPGP RGEKGDRSER GEKGERGVPG RKGVKGQKGE
ENSBTAP00000017548/1-398 GTKGEKGRPG EPGLDGFPGP RGEKGDRSER GEKGDRGVPG RKGMKGQKGE
ENSTTRP00000010067/1-541 GTKGEKGRPG EPGLDGFPGP RGEKGDRSER GEKGERGVPG RKGMKGQKGE
bmy_13645T0/1-616 GTKGEKGRPG EPGLDGFPGP RGEKGDRSER GEKGERGVPG RKGMKGQKGE
BACU002893/1-247 GTKGEKGRPG EPGLDGFPGP RGEKGDRSER GEKGERGVPG RKGMKGQKGE
601 650
ENSP00000375069/1-540 PGPPGLDQPC PV-------- ---------- --------GP DGLPVPGCWH
ENSBTAP00000017548/1-398 PGPPGLDQPC PV-------- ---------- --------GP DGLPVPGCWH
ENSTTRP00000010067/1-541 PGPPGLDQPW PV-------- ---------- --------GP DGLPVPGCWH
bmy_13645T0/1-616 PGPPGLDQPC PV-------- ---------- --------GP DGLPVPGCWH
BACU002893/1-247 PGPPGLDQPC PVEDLKCGGR RGAPGSRGLA RGSRPCPAGP DGLPVPGCWH
651 700
ENSP00000375069/1-540 K
ENSBTAP00000017548/1-398 K
ENSTTRP00000010067/1-541 K
bmy_13645T0/1-616 K
BACU002893/1-247 K