KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:45 2014 Check: 00 .. Name: ENSP00000375069/1-540 Len: 651 Check: 7328 Weight: 1.00 Name: ENSBTAP00000017548/1-398 Len: 651 Check: 6616 Weight: 1.00 Name: ENSTTRP00000010067/1-541 Len: 651 Check: 297 Weight: 1.00 Name: bmy_13645T0/1-616 Len: 651 Check: 5942 Weight: 1.00 Name: BACU002893/1-247 Len: 651 Check: 7858 Weight: 1.00 // 1 50 ENSP00000375069/1-540 MGPGERAGGG GDAGKGNAAG GGGGGRSATT AGSRAVSALC LLLSVGSAAA ENSBTAP00000017548/1-398 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010067/1-541 MSPGQ--GAG GDARKGCRTG GGGGGRPATA AGAWAVSALC LLLSAGSAAA bmy_13645T0/1-616 VARGP-ITNP FPLSLPRAGR AKASGRPSEE ASLWRPEPLP LRLRVMLGPI BACU002893/1-247 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000375069/1-540 CLLL---GVQ AAALQGRVAA LEEEREL--L RRAGPPGALD AWA--EPHLE ENSBTAP00000017548/1-398 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010067/1-541 CLLL---GVQ AAALQGRVAA LEEEREL--L WRAGSPDTLV AWA--EPQLE bmy_13645T0/1-616 SFREFKGKME LLGLQGPQDP LGPGALLATL GKMAPGEHQA QWARVDPQGP BACU002893/1-247 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000375069/1-540 RLLREKLDGL AKIRTAREAP SECVCPPGPP GRRGK----- --PGRRGDPG ENSBTAP00000017548/1-398 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010067/1-541 RLLREKMEGP VKLRTVREAP TDCVCPPGPP GRRGK----- --PGRRGDPG bmy_13645T0/1-616 RGMMGHQASQ GSQDPQGPSP LGCTEPTAPN PRVGSGTFSG TTPEAHRPRR BACU002893/1-247 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000375069/1-540 PPGQSGRDGY PGPLGLDGKP GLPGPKGEKG APGDFGPR-- --------GD ENSBTAP00000017548/1-398 ---------F QGPLGLDGKP GLPGPKGEKG APGDFGPQ-- --------GD ENSTTRP00000010067/1-541 PPGQSGRDGY PGPLGLDGKP GLPGPKGEKG APGDFGPR-- --------GD bmy_13645T0/1-616 PPACPSALSQ HTPL-LQGKP GSAGPQGENG VDRAPGPKVT SQSTALLPKG BACU002893/1-247 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000375069/1-540 QGQDGAAGPP GPPGPPGARG PPG-----DT GKDGPRG--A QGPAGPKGEP ENSBTAP00000017548/1-398 PGQDGAAGPP GPPGPPGARG PPG-----DT GKDGPRG--A PGPEGPKGEA ENSTTRP00000010067/1-541 QGQDGAAGPP GPPGPPGARG PPG-----DT GKDGPRG--A PGPVGAKGEA bmy_13645T0/1-616 PSRGEMVSPP ICPFKLGVRE VPGPGVLFDW QSEAHLGPWA SGPQWPISTQ BACU002893/1-247 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000375069/1-540 GQDGEMGPKG PPGPKGEPGV PGKKGDDGTP SQPG---PPG PKGEPGSMGP ENSBTAP00000017548/1-398 GQGGATGPSG PPGPKAKPSV SGKKGDDGIP GQPGLSGPPG PKASQGAKGP ENSTTRP00000010067/1-541 GQDGETGPSG PPGPKGEPSV PGKKGDDGTP GQPGLPGPSG PKGKPGSAGP bmy_13645T0/1-616 -QGSEEGLSG PPSGSPIPGM P------VTS TWPCVLWVRG HWRGQGNFWL BACU002893/1-247 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000375069/1-540 RGENGVDGAP GPKGEPGHRG TDGAAGPRGA PGLKGEQGDT VVIDYDGRIL ENSBTAP00000017548/1-398 QVENGTDRAQ GPKGEPGHPG TDGATGQRGP PGLKGEQGDT VVIDYDGRIL ENSTTRP00000010067/1-541 QGENGVDRAL GPKGEPGQPG ADGATGPRGA PGLKGEQGDT VVIDYDGRIL bmy_13645T0/1-616 QPCTPGCNHA SSQGEPGQPG AYGATGPRGP PGLKGEQGDT VVIDYDGRIL BACU002893/1-247 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000375069/1-540 DALKGPPGPQ GPPGPPGIPG AKGELGLPGA PGIDGEKGPK GQKGDPGEPG ENSBTAP00000017548/1-398 DALKGPPGPQ GPPGPPGIPG AKGELGLPGA PGIDGEKGPK GQKGDPGEAG ENSTTRP00000010067/1-541 DALMGPPGPQ GPPGPPGIPG AKGELGLPGA PGIDGEKGPK GQKGDPGEAG bmy_13645T0/1-616 DALMGPPGPQ GPPGPAGIPG AKGELGLPGA PGIDGEKGPK GQKGDPGEAG BACU002893/1-247 ---MGPPGPQ GPPGPAGIPG AKGELGLPGA PGIDGEKGPK GQKGDPGEAG 401 450 ENSP00000375069/1-540 PAGLKGEAGE MGLSGLP--- ---------- ----GADGLK GEKGESASDS ENSBTAP00000017548/1-398 PTGPKGEAGE MGLSGLP--- ---------- ----GANGPK GEKGESASDK ENSTTRP00000010067/1-541 PIGPKGEAGE MGLSGLP--- ---------- ----GADGPK GEKGDPASDN bmy_13645T0/1-616 LIGPKGEAGE MGLSGLPVRG WVGLTLLAPC RGPKGADGPK GEKGEPASDN BACU002893/1-247 LIGPKGEAGE MGLSGLP--- ---------- ----GADGPK GEKGEPASDN 451 500 ENSP00000375069/1-540 LQESL----- ---------- ---------- ---------A QLIVEPGPPG ENSBTAP00000017548/1-398 LQESL----- ---------- ---------- ---------A QIIAEPGPPG ENSTTRP00000010067/1-541 LQESL----- ---------- ---------- ---------A QIIVEPGPPG bmy_13645T0/1-616 LQESLASTGP PTRQCPPGGS RELGAHTQGV LLQCPMNSSA QIIVEPGPPG BACU002893/1-247 LQESL----- ---------- ---------- ---------A QIIVEPGPPG 501 550 ENSP00000375069/1-540 PPGPPGPMGL QGIQGPKGLD GAKGEKGASG ERGPSGLPGP VGPPGLIGLP ENSBTAP00000017548/1-398 PPGPPGPMGL QGMQGPKGLD GAKGEKGSSG ERGPTGLPGP AGPPGLIGLP ENSTTRP00000010067/1-541 PPGPPGPMGL QGIQGPKGLD GAKGEKGMSG ERGSSGLPGP AGPPGLIGLP bmy_13645T0/1-616 PPGPPGPMGL QGIQGPKGLD GAKGEKGMSG ERGPSGLPGP AGPPGLIGLP BACU002893/1-247 PPGPPGPMGL QGIQGPKGLD GAKGEKGMSG ERGPSGLPGP AGPPGLIGLP 551 600 ENSP00000375069/1-540 GTKGEKGRPG EPGLDGFPGP RGEKGDRSER GEKGERGVPG RKGVKGQKGE ENSBTAP00000017548/1-398 GTKGEKGRPG EPGLDGFPGP RGEKGDRSER GEKGDRGVPG RKGMKGQKGE ENSTTRP00000010067/1-541 GTKGEKGRPG EPGLDGFPGP RGEKGDRSER GEKGERGVPG RKGMKGQKGE bmy_13645T0/1-616 GTKGEKGRPG EPGLDGFPGP RGEKGDRSER GEKGERGVPG RKGMKGQKGE BACU002893/1-247 GTKGEKGRPG EPGLDGFPGP RGEKGDRSER GEKGERGVPG RKGMKGQKGE 601 650 ENSP00000375069/1-540 PGPPGLDQPC PV-------- ---------- --------GP DGLPVPGCWH ENSBTAP00000017548/1-398 PGPPGLDQPC PV-------- ---------- --------GP DGLPVPGCWH ENSTTRP00000010067/1-541 PGPPGLDQPW PV-------- ---------- --------GP DGLPVPGCWH bmy_13645T0/1-616 PGPPGLDQPC PV-------- ---------- --------GP DGLPVPGCWH BACU002893/1-247 PGPPGLDQPC PVEDLKCGGR RGAPGSRGLA RGSRPCPAGP DGLPVPGCWH 651 700 ENSP00000375069/1-540 K ENSBTAP00000017548/1-398 K ENSTTRP00000010067/1-541 K bmy_13645T0/1-616 K BACU002893/1-247 K