KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:02:03 2014 Check: 00 .. Name: ENSTTRP00000003429/1-560 Len: 620 Check: 9224 Weight: 1.00 Name: ENSP00000383931/1-560 Len: 620 Check: 7673 Weight: 1.00 Name: ENSBTAP00000017571/1-583 Len: 620 Check: 8849 Weight: 1.00 Name: bmy_10127T0/1-569 Len: 620 Check: 92 Weight: 1.00 // 1 50 ENSTTRP00000003429/1-560 MLRSALLCAA LGLLRAQPFP CPPTCRCIFR DAAQCSQGSV ARIAALGLPT ENSP00000383931/1-560 MLRGTLLCAV LGLLRAQPFP CPPACKCVFR DAAQCSGGDV ARISALGLPT ENSBTAP00000017571/1-583 MLRSALLCAA LWLLRAQPFP CPPTCRCAFR DAAQCSRGTV AGIAALGLPT bmy_10127T0/1-569 MLRSALLCAA LGLLRAQPFP CPPTCRCIFR DAAQCSQGSV ARIAALGLPT 51 100 ENSTTRP00000003429/1-560 NLTHILLFRM GPGALLNSSF SGMTVLQRLM LSDTHVSAIA PGTFNDLIKL ENSP00000383931/1-560 NLTHILLFGM GRGVLQSQSF SGMTVLQRLM ISDSHISAVA PGTFSDLIKL ENSBTAP00000017571/1-583 NLTHILLFQM GRGTLQNNSF SDMTVLQRLL LSDSHVSAIA PGTFNDPIKL bmy_10127T0/1-569 NLTHILLFQM GRGALQNSSF SGMTVLQRLM LSDSQVSAIA PGTFNDLIKL 101 150 ENSTTRP00000003429/1-560 KTLRLSHNKI THLPGALLDK LVLLEQLFLD GNELKSLDQN MFQKLVNLQE ENSP00000383931/1-560 KTLRLSRNKI THLPGALLDK MVLLEQLFLD HNALRGIDQN MFQKLVNLQE ENSBTAP00000017571/1-583 KTLRLSRNKI THLPSALLDN LVLLEQLFLD GNELKSLDQN LFQKLVHLQE bmy_10127T0/1-569 KTLRLSHNKI THLPGALLDK LVLLEQLFLD GNELKSLDQN MFQKLVNLQE 151 200 ENSTTRP00000003429/1-560 LFLNQNQLAF LPASLFTHLG NLKFLDLSGN NLTHLPEGLF GVQVKLEKLL ENSP00000383931/1-560 LALNQNQLDF LPASLFTNLE NLKLLDLSGN NLTHLPKGLL GAQAKLERLL ENSBTAP00000017571/1-583 LFLNQNQLAF LPASLFTHLG NLKLLDLSGN NLTHLPEGLF GVQVKLQKLL bmy_10127T0/1-569 LFLNQNQLAF LPASLFTHLG NLKSLDLSGN NLTHLPEGLF GVQVKLEKLL 201 250 ENSTTRP00000003429/1-560 LHSNQLVSLD SGLLDSLRAL LELQLDRNHI RSVAPGAFDR LRSLSSLTLS ENSP00000383931/1-560 LHSNRLVSLD SGLLNSLGAL TELQFHRNHI RSIAPGAFDR LPNLSSLTLS ENSBTAP00000017571/1-583 LHSNRLASLE SGLLDSLRAL TELQLHTNHL RSIVPGAFDR LRSLSSLTLS bmy_10127T0/1-569 LHSNQLVSLD SGLLDSLRAL MELQLDRNHI RSVAPGAFDL LRSLSSLTLS 251 300 ENSTTRP00000003429/1-560 RNRLEFLPSA LFLHSHNLTY LTLFENPLEE LPEVLFGVMG GLRELWLNAT ENSP00000383931/1-560 RNHLAFLPSA LFLHSHNLTL LTLFENPLAE LPGVLFGEMG GLQELWLNRT ENSBTAP00000017571/1-583 ENRLEFLPSA LFLHSHNLTF LTLSENPLEE LPKVLFGEIG GLRELRLKST bmy_10127T0/1-569 RNRLEFLPSA LFLHSHNLTF LTLFENPLEE LPEVLFGEMG GLRELWLNAT 301 350 ENSTTRP00000003429/1-560 QLRTLPAAAF RNLSGLRVLG VTLSPRLSAL PEDAFRGLGE LRXXXXXXXX ENSP00000383931/1-560 QLRTLPAAAF RNLSRLRYLG VTLSPRLSAL PQGAFQGLGE LQVLALHSNG ENSBTAP00000017571/1-583 QLRTLPAAAF RNLTGLRVLE VSLSPRLSAL PEDAFRGLGE LQVLALSSTG bmy_10127T0/1-569 QLRTLPAAAF RNLSGLRVLG VTLSPRLSAL PEDAFRGLGE LRVLALRSTG 351 400 ENSTTRP00000003429/1-560 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000383931/1-560 LTALPDGLLR GLGKLRQVSL RRNRLRALPR ALFRNLSSLE SVQLDHNQLE ENSBTAP00000017571/1-583 LASLPAGLLR GLCRLRHVSL RSNRLRALPS ALFRNLSSLE EVQLDHNQLE bmy_10127T0/1-569 LASLPAGLLR GLGGLRHVSL RRNRLRTLPR ELFRNLSSLE EIQLDHNQLE 401 450 ENSTTRP00000003429/1-560 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000383931/1-560 TLPGDVFGAL PRLTEVLLGH NSWRCDCGLG PFLGWLRQHL GLVGGEEPPR ENSBTAP00000017571/1-583 TLPGDAFEAL PRLAGVLLGH NPWRCDCGLG PFLAWLRRHA GLVGRAEPPR bmy_10127T0/1-569 TLPGDVFEAL PRLANVLLGH NPWRCDCGLG PFLAWLRRHA GLVGRAEPPL 451 500 ENSTTRP00000003429/1-560 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX----- ENSP00000383931/1-560 CAGPGAHAGL PLWALPGGDA ECPGPRGPPP RPAADSSSEA PVHPA----- ENSBTAP00000017571/1-583 CHGPGPHAGR LLWTLQAGDL GCPRPES--- ---------- ---------- bmy_10127T0/1-569 CHGPGPHAGL PLWALPHGDP GCLRPGSPPS RRLALGSSEG PQHPALPAAP 501 550 ENSTTRP00000003429/1-560 ----XXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXIIVF ENSP00000383931/1-560 ----LAPNSS EPWVWAQPVT TGKGQDHSPF WGFYFLLLAV QAMITVIIVF ENSBTAP00000017571/1-583 ---------- ----WTRLVA EGQSQDHNLF WGLYFLLLAA QALITGIIVF bmy_10127T0/1-569 ARASLGPKRS ESWAWARPVA EGKSQDQSLF WGLYFLLLAA QAIITGIIVF 551 600 ENSTTRP00000003429/1-560 AMIRLGRLFR KLI------- ---------- ---------- ---------- ENSP00000383931/1-560 AMIKIGQLFR KLI------- ---------- ---------- ---------- ENSBTAP00000017571/1-583 AMIKLCRLFR KLITELWFEA GMPHGCPRTS GAAVARAPPC HRADTAPGGD bmy_10127T0/1-569 AMIRLGRLFR KLI------- ---------- ---------- ---------- 601 650 ENSTTRP00000003429/1-560 -RERALV--- ---------- ENSP00000383931/1-560 -RERALG--- ---------- ENSBTAP00000017571/1-583 SRQAALKYAE DPGAALMLQP bmy_10127T0/1-569 -RERALV--- ----------