KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:04 2014 Check: 00 .. Name: ENSP00000416508/1-1226 Len: 1302 Check: 2551 Weight: 1.00 Name: ENSBTAP00000017579/1-1226 Len: 1302 Check: 9538 Weight: 1.00 Name: bmy_10126T0/1-1127 Len: 1302 Check: 7563 Weight: 1.00 Name: BACU016495/1-1259 Len: 1302 Check: 4750 Weight: 1.00 Name: ENSTTRP00000003445/1-1226 Len: 1302 Check: 2533 Weight: 1.00 // 1 50 ENSP00000416508/1-1226 ---------- ---------- ---------- ---------- --MDREERKT ENSBTAP00000017579/1-1226 ---------- ---------- ---------- ---------- --MDKEERKI bmy_10126T0/1-1127 MVRSKSRLLK ALLISTVGKN DDTVPLLSSI VLKHKTFPNT VDMDKEERKT BACU016495/1-1259 ---------- ---------- ---------- ---------- --MDKEERKT ENSTTRP00000003445/1-1226 ---------- ---------- ---------- ---------- --MDKEERKT 51 100 ENSP00000416508/1-1226 INQGQEDEME IYGYNLSRWK LAIVSLGVIC SGGFLLLLLY WMPEWRVKAT ENSBTAP00000017579/1-1226 INQGQEDEME IYGYNLCRWK LAIISLGVVC TGGFLLLLLY WMPEWRVKVT bmy_10126T0/1-1127 INQGQEDEME IYGYNLCRWK LAIVSLGVVC TGGFLLLLLY WMPEWRVKAT BACU016495/1-1259 INQGQEDEME IYGYNLCRWK LAIVSLGVVC TGGFLLLLLY WMPEWRVKAT ENSTTRP00000003445/1-1226 INQGQEDEME IYGYNLCRWK LAIVSLGVVC TGGFLLLLLY WMPEWRVKAT 101 150 ENSP00000416508/1-1226 CVRAAIKDCE VVLLRTTDEF KMWFCAKIRV LSLETYPVSS PKSMSNKLSN ENSBTAP00000017579/1-1226 CVRAAIKDCE VVLLRTTDEF RTWFCAKVRF LSLETPPFSS SKSLVNKVLN bmy_10126T0/1-1127 CIRAAVKDCE VVLLRTTDEF RMWFCAKIRF LSLETPPFSI PKSMANKVSN BACU016495/1-1259 CIRAAVKDCE VVLLRTTDEF RMWFCAKIRF LSLETPPFSS PKSMANKVSN ENSTTRP00000003445/1-1226 CIRAAVKDCE VVLLRTTDEF RMWFCAKIRL LSLETPPFSS PKSMANKVSN 151 200 ENSP00000416508/1-1226 GHAVCLIENP TEENRHRISK YSQTESQQIR YFTHHSVKYF WNDTIHNFDF ENSBTAP00000017579/1-1226 GHAVHLTENL AEENRLEMNK YSQPQSQQIR YFTHHSMKYF WNDTLHNFDF bmy_10126T0/1-1127 GHAVHLTENL AEENRLEMNK YSQPQSQQIR CFTHHSVKYF WNDTLHNFVF BACU016495/1-1259 GHAVHLTENL AEENRLEMNK YSQPQSQQIR CFTHHSVKYF WNDTLHNFVF ENSTTRP00000003445/1-1226 GHAVHLTENL AEENRLEMNK YSQPQSQQIR YFTHHSVKYF WNDTLHNFVF 201 250 ENSP00000416508/1-1226 LKGLDEGVSC TSIYEKHSAG LTKGMHAYRK LLYGVNEIAV KVPSVFKLLI ENSBTAP00000017579/1-1226 LKGLDEGVSC TSIYEKHSAG LTKGMHAYRK LLYGVNEIAV KVPSVFKLLV bmy_10126T0/1-1127 LKGLDEGVSC TSIYEKHSAG LTKGMHAYRK LLYGVNEIAV KVPSVFKLLI BACU016495/1-1259 LKGLDEGVSC TSIYEKHSAG LTKGMHAYRK LLYGVNEIAV KVPSVFKLLI ENSTTRP00000003445/1-1226 LKGLDEGVSC TSIYEKHSAG LTKGMHAYRK LLYGVNEIAV KVPSVFKLLI 251 300 ENSP00000416508/1-1226 KEVLNPFYIF QLFSVILWST DEYYYYALAI VVMSIVSIVS SLYSIRKQYV ENSBTAP00000017579/1-1226 KEVLNPFYIF QLFSVILWST DEYYYYAIAI VIMSVVSIIS SLYAIRKQYI bmy_10126T0/1-1127 KELEELVYIN EL-------- ---------- ---------- KFFSLIQQYI BACU016495/1-1259 KEVLNPFYIF QLFSVILWST DEYYYYAIAI VIMSVVSIIS SLYAIRKQYI ENSTTRP00000003445/1-1226 KEVLNPFYIF QLFSVILWST DEYYYYAIAI VIMSVVSIIS SLYAIRKQYI 301 350 ENSP00000416508/1-1226 MLHDMVATHS TVRVSVCRVN EEIEEIFSTD LVPGDVMVIP LNGTIMPCDA ENSBTAP00000017579/1-1226 MLHDMVAAHS TVRVSVCRVN EEIEEIFSTD LVPGDVMVIP LNGTVMPCDA bmy_10126T0/1-1127 MLHDMVAAHS TVRVSVCRVN EEIEEIFSTD LVPGDVMVIP LNGTVMPCDA BACU016495/1-1259 MLHDMVAAHS TVRVSVCRVN EEIEEIFSTD LVPGDVMVIP LNGTVMPCDA ENSTTRP00000003445/1-1226 MLHDMVAAHS TVRVSVCRVN EEIEEIFSTD LVPGDVMVIP LNGTVMPCDA 351 400 ENSP00000416508/1-1226 VLINGTCIVN ESMLTGESVP VTKTNLPNPS VDVKGIGDEL YNPETHKRHT ENSBTAP00000017579/1-1226 VLINGTCIVN ESMLTGESVP VTKTNLPNPS VDMKGTRDEL YSPETHRRHT bmy_10126T0/1-1127 VLINGTCIVN ESMLTGESVP VTKTNLPNPS VDIKGMGDEL YSPETHRRHT BACU016495/1-1259 VLINGTCIVN ESMLTGESVP VTKTNLPNPS VDIKGMGDEL YSPETHRRHT ENSTTRP00000003445/1-1226 VLINGTCIVN ESMLTGESVP VTKTNLPNPS VDVKGMGDEL YSPETHRRHT 401 450 ENSP00000416508/1-1226 LFCGTTVIQT RFYTGELVKA IVVRTGFSTS KGQLVRSILY PKPTDFKLYR ENSBTAP00000017579/1-1226 LFCGTTVIQT RFYTGELVKA IVVRTGFSTS KGQLVRSILY PKPTDFKLYR bmy_10126T0/1-1127 LFCGTTVIQT RFYTGELVKA IVVRTGFSTS KGQLVRSILY PKPTDFKLYR BACU016495/1-1259 LFCGTTVIQT RFYTGELVKA IVVRTGFSTS KGQLVRSILY PKPTDFKLYR ENSTTRP00000003445/1-1226 LFCGTTVIQT RFYTGELVKA IVVRTGFSTS KGQLVRSILY PKPTDFKLYR 451 500 ENSP00000416508/1-1226 DAYLFLLCLV AVAGIGFIYT IINSILNEVQ VGVIIIESLD IITITVPPAL ENSBTAP00000017579/1-1226 DAYLFLLCLV GVAAIGFIYT IINNILNEVE VGDIIIESLD IITITVPPAL bmy_10126T0/1-1127 DAYLFLLCLV A--------- --------VE VGDIIIESLD IITITVPPAL BACU016495/1-1259 DAYLFLLCLV AVAGIGFIYT IINSILNEVE VGDIIIESLD IITITVPPAL ENSTTRP00000003445/1-1226 DAYLFLLCLV AVAGIGFIYT IINSILNEVE VGDIIIESLD IITITVPPAL 501 550 ENSP00000416508/1-1226 PAAMTAGIVY AQRRLKKIGI FCISPQRINI CGQLNLVCFD KTGTLTEDGL ENSBTAP00000017579/1-1226 PAAMTAGIVY AQRRLKKVGI FCISPQRINI CGQLNLVCFD KTGTLTEDGL bmy_10126T0/1-1127 PAAMTAGIVY AQRRLKKVGI FCISPQRINI CGQLNLVCFD K--------- BACU016495/1-1259 PAAMTAGIVY AQRRLKKVGI FCISPQRINI CGQLNLVCFD KTGTLTEDGL ENSTTRP00000003445/1-1226 PAAMTAGIVY AQRRLKKVGI FCISPQRINI CGQLNLVCFD KTGTLTEDGL 551 600 ENSP00000416508/1-1226 DLWGIQRVEN ARFLSPEENV CNEMLVKSQF VACMATCHSL TKIEGVLSGD ENSBTAP00000017579/1-1226 DLWGIQRVEN ARFLLPEEKV CSEMLVKSQF VACMATCHSL TKIEGVLSGD bmy_10126T0/1-1127 ---------N LSFLLPEEKV CNEMLVKSQF VACMATCHSL TKIEGVLSGD BACU016495/1-1259 DLWGIQRVEN ARFLLPEEKV CNEMLVKSQF VACMATCHSL TKIEGVLSGD ENSTTRP00000003445/1-1226 DLWGIQRVEN TRFLLPEEKV CNEMLVKSQF VACMATCHSL TKIEGVLSGD 601 650 ENSP00000416508/1-1226 PLDLKMFEAI GWILEEATEE ETALHNRIMP TVVRPPKQLL PESTPAGNQE ENSBTAP00000017579/1-1226 PLDLKMFEAI GWILEEATEE ETALHNRIMP TVVRPPKQLL PESAPAGSQE bmy_10126T0/1-1127 PLDLKMFEAI GWILEEATEE ETALHNRIMP TVVRPPKQLL PESTPAGNQE BACU016495/1-1259 PLDLKMFEAI GWILEEATEE ETALHNRIMP TVVRPPKQLL PESTPAGNQE ENSTTRP00000003445/1-1226 PLDLKMFEAI GWILEEATEE ETALHNRIMP TVVRPPKQLL PESTPAGNQE 651 700 ENSP00000416508/1-1226 MELFELPATY EIGIVRQFPF SSALQRMSVV ARVLGDRKMD AYMKGAPEAI ENSBTAP00000017579/1-1226 MELFELPAVY EIGIVRQFPF SSALQRMCVV ARVLGDRKMD AYMKGAPEVI bmy_10126T0/1-1127 MELFELPAIY EIGIVRQFPF SSALQRMSVV ARVLGDRKMD AYVKGAPEVI BACU016495/1-1259 MELFELPAIY EIGIVRQFPF SSALQRMSVV ARVLGDRKMD AYVKGAPEVI ENSTTRP00000003445/1-1226 MELFELPAIY EIGIVRQFPF SSALQRMSVV ARVLGDRKMD AYVKGAPEVI 701 750 ENSP00000416508/1-1226 AGLCKPETVP VDFQNVLEDF TKQGFRVIAL AHRKLESKLT WHKVQNISRD ENSBTAP00000017579/1-1226 AGLCKPETVP VDFEKVLEDY TKQGFRVIAL AHRKLESKLT WHKVQNVGRD bmy_10126T0/1-1127 AGLCKPETVP VDFEKVLENY TKQGFRVIAL AHRKLESKLT WHKVQNISRD BACU016495/1-1259 AGLCKPETVP VDFEKVLENY TKQGFRVIAL AHRKLESKLT WHKVQNISRD ENSTTRP00000003445/1-1226 ASLCKPETVP VDFEKVLENY TKQGFRVIAL AHRKLESKLT WHKVQNISRD 751 800 ENSP00000416508/1-1226 AIENNMDFMG LIIMQNKLKQ ETPAVLEDLH KANIRTVMVT GDSMLTAVSV ENSBTAP00000017579/1-1226 AIENNMDFMG LIIMQNKLKR ETPAVLEDLH KANIRTVMVT GDNMLTAVSV bmy_10126T0/1-1127 AIENNMDFMG LIIMQNKLKR ETPAVLEDLH KASIRTVMVT GDNMLTAVSV BACU016495/1-1259 AIENNMDFMG LIIMQNKLKR ETPAVLEDLH KASIRTVMVT GDNMLTAVSV ENSTTRP00000003445/1-1226 AIENNMDFMG LIIMQNKLKR ETPAVLEDLH KANIRTVMVT GDNMLTAVSV 801 850 ENSP00000416508/1-1226 ARDCGMILPQ DKVIIAEALP PKDGKVAKIN WHYADSLTQC SHPSAIDPEA ENSBTAP00000017579/1-1226 ARDCGMILPQ DKVIIAEALP PKDGKVAKIN WHYADTITQS NDSSAIDPEA bmy_10126T0/1-1127 ARDCGMILPQ DKVIIAEALP PKDGKVAKIN WHYADTLTQS SDSSAIDSEA BACU016495/1-1259 ARDCGMILPQ DKVIIAEALP PKDGKVAKIN WHYADTLTQS SDSSAIDSEA ENSTTRP00000003445/1-1226 ARDCGMILPQ DKVIIAEALP PKDGKVAKIN WHYADTLTQS SDSSAIDSEA 851 900 ENSP00000416508/1-1226 IPVKLVHDSL EDLQMTRYHF AMNGKSFSVI LEHFQDLVPK LMLHGTVFAR ENSBTAP00000017579/1-1226 IPIKLVHDNL EDLQVTRYHF AMNGKSFSVI LEHFQDLVPK LMLHGTVFAR bmy_10126T0/1-1127 IPIKLVHNNL EDLQVTRYHF AMNGKSFSVI LEHFQDLVPK VI-------- BACU016495/1-1259 IPIKLVHDNV EDLQATRYHF AMNGRSFSVI LEHFQDLVPK LMLHGTVFAR ENSTTRP00000003445/1-1226 IPVM--HDNL -DLQVTRYHF AMNGKSFSVI LEHFQDLVPK LMLHGTVFAR 901 950 ENSP00000416508/1-1226 MAPDQKTQLI EALQNVDYFV GMCGDGANDC GALKRAHGGI SLSELEASVA ENSBTAP00000017579/1-1226 MAPDQKTQLV EALQNVDYYV GMCGDGANDC GALKRAHGGI SLSELEASVA bmy_10126T0/1-1127 ---------- ----SMSYFV GMCGDGANDC GALKRAHGGI SLSELEASVA BACU016495/1-1259 MAPDQKTQVV EALQNVDYFV GMCGDGANDC GALKRAHGGI SLSELEASVA ENSTTRP00000003445/1-1226 MAPDQKTQLV EALQNVDYFV GMCGDGANDC GALKRAHGGI SLSELEASVA 951 1000 ENSP00000416508/1-1226 SPFTSKTPSI SCVPNLIREG RAALITSFCV FKFMALYSII QYFSVTLLYS ENSBTAP00000017579/1-1226 SPFTSKTPSI SCVPNLIREG RAALMTSFCV FKFMALYSII QYFSVTLLYS bmy_10126T0/1-1127 SPFTSKTPSI SCVPNLIREG RAALMTSFCV FKFMALYSII QYFSVTLLYS BACU016495/1-1259 SPFTSKTPSI SCVPNLIREG RAALMTSFCV FKFMALYSII QYFSVTLLYS ENSTTRP00000003445/1-1226 SPFTSKTPSI SCVPNLIREG RAALMTSFCV FKFMALYSII QYFSVTLLYS 1001 1050 ENSP00000416508/1-1226 ILSNLGDFQF LFIDLAIILV VVFTMSLNPA WKELVAQRPP SGLISGALLF ENSBTAP00000017579/1-1226 ILSNLGDFQF LFIDLAIILV VVFTMSLNPA WKELVAQRPP SGLISGALLF bmy_10126T0/1-1127 ILSNLGDFQF LFIDLAIILV VVFTMSLNPA WKELVAQRPP SGLISGALLF BACU016495/1-1259 ILSNLGDFQF LFIDLAIILV VVFTMSLNPA WKELVAQRPP SGLISGALLV ENSTTRP00000003445/1-1226 ILSNLGDFQF LFIDLAIILV VVFTMSLNPA WKELVAQRPP SGLISGALLF 1051 1100 ENSP00000416508/1-1226 SVLSQIIICI GFQSLGFFWV KQQPWYEVWH PKSD---ACN TTGSGFWNSS ENSBTAP00000017579/1-1226 SVLSQIIISI GFQSLGFFWV KQQTWYKESH PYSY---AFN TTESLDGNSS bmy_10126T0/1-1127 SVLSQIIICI GFQSLGFFWV KQQTWYKESH PHSDTQEAFN TTGNLYGNSS BACU016495/1-1259 SVLSQIIICI GFQSLGFFWV KQQTWYKESR PHSDTQEAFN TTGSLYGNSS ENSTTRP00000003445/1-1226 SVLSQIIICI GFQSLGFFWV KQQTWYKESH PHSDTQEAFN TTGSLYGNSS 1101 1150 ENSP00000416508/1-1226 HVDNETELDE HNIQNYENTT VFFISSFQYL IVAIAFSKGK PFRQPCYKNY ENSBTAP00000017579/1-1226 HVDDETNPDK HNIENYENTT VFFISSFQYL IVAIAFSKGK PFRQPCYKNY bmy_10126T0/1-1127 HLYNETNPDR HNIENYENTT VFFISSFQYL IVAIAFSKGK PFRQPCYKNY BACU016495/1-1259 HLYNETNPDR HNIENYENTT VFFISSFQYL IVAIAFSKGK PFRQPCYKNY ENSTTRP00000003445/1-1226 HSYNETNPDR HNIENYENTT VFFISSFQYL IVAIAFSKGK PFRQPCYKNY 1151 1200 ENSP00000416508/1-1226 FFVFSVIFLY IFILFIMLYP VASVDQVLQI VCVPYQWRVT MLIIVLVNAF ENSBTAP00000017579/1-1226 FFVVSVIMLY AFILFIMLHP VDSIDQVLQI VCVPYQWRIT MLIIVLVNAF bmy_10126T0/1-1127 FFVVSLIILY VFILFIMLHP VASIDQILQI VCVPYQWRVT MLIIVLVNAF BACU016495/1-1259 FFVVSLIILY VFILFIMLHP VASIDQILQI VCVPYQWRVT MLIIVLVNAF ENSTTRP00000003445/1-1226 FFVVSLIILY VFILFIMLHP VASIDQILQI VCVPYQWRVT MLIIVLVNAF 1201 1250 ENSP00000416508/1-1226 VSITVE---- ---------- ---------- ------ESVD RWGKCCLPWA ENSBTAP00000017579/1-1226 VSIAVE---- ---------- ---------- ------ESMD WWEKCCLSWA bmy_10126T0/1-1127 VSIVVE---- ---------- ---------- ---------- ---------- BACU016495/1-1259 VSIVVENFFL DMVLWKVVFN RDKQGEYRFT TTQPPQESVD WWGKCCLSWA ENSTTRP00000003445/1-1226 VSIMVE---- ---------- ---------- ------ESVD WWGKCCLSWA 1251 1300 ENSP00000416508/1-1226 LGCRKKTPKA KYMYLAQELL VDPEWPPKPQ TTTEAKALVK ENGSCQIITI ENSBTAP00000017579/1-1226 LNCRKKMPKA KYMYLAQELL VDPEWPPKPQ TTTEAKALVK ENGSCQIITI bmy_10126T0/1-1127 ---------- ---------- ---------- ---------- ------VSTL BACU016495/1-1259 LNCRKKMPKA KYMYLAQELL VDPEWPPKPQ TTTEAKALVK ENGSCQIITI ENSTTRP00000003445/1-1226 LNCRKKMPKA KYMYLAQELL VDPEWPPKPQ TTTEAKALVK ENGSCQIITI 1301 1350 ENSP00000416508/1-1226 T- ENSBTAP00000017579/1-1226 T- bmy_10126T0/1-1127 RN BACU016495/1-1259 T- ENSTTRP00000003445/1-1226 T-