KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:05 2014 Check: 00 .. Name: BACU005201/1-453 Len: 559 Check: 5377 Weight: 1.00 Name: ENSP00000409964/1-532 Len: 559 Check: 1557 Weight: 1.00 Name: ENSBTAP00000017582/1-527 Len: 559 Check: 1886 Weight: 1.00 Name: bmy_00310T0/1-459 Len: 559 Check: 9286 Weight: 1.00 Name: ENSTTRP00000004335/1-435 Len: 559 Check: 8653 Weight: 1.00 // 1 50 BACU005201/1-453 ---------- -------MDH AAAQLEKQHV HDVYES---- -----TAPYF ENSP00000409964/1-532 ---------- -------MDQ FGDILEGEVD HSFFDSDFEE GKKCETNSVF ENSBTAP00000017582/1-527 ---------- -------MDR FDDISEGEVD HSFFDSDFEE ARKGDSSSVF bmy_00310T0/1-459 MRKPAREGLY KLYMFAVMDR FGDISEGEVD HSFFDSDFEE AKKCESNSVF ENSTTRP00000004335/1-435 ---------- -------MDQ FGDTSEGEVD HSFFDSDFEE AKKCESNSVF 51 100 BACU005201/1-453 SDLQSKAWPR VRQFLQDQKP GSLIADIGC- ---------G TGKYLKVNSQ ENSP00000409964/1-532 DKQNDDPKER I-----DKDT KNVNSNTGMQ TTENYLTEKG NERNVKFPPE ENSBTAP00000017582/1-527 DKQDDDAEER T-----DKDT ENVNLKLGLQ RKEDDLTEKG TESSGKTPPE bmy_00310T0/1-459 DKQNDDDEER I-----DKDT ENVNLKFGIQ RRKNNLTEKR TERNEKIPPE ENSTTRP00000004335/1-435 DKQNDDAEER I-----DKDT ENVNLKFGIQ RRKSDLTEKG TERNEKISPE 101 150 BACU005201/1-453 VHTLGCDY-- ---CAPLVEI ARR-RGCEVM VCDNLNLPFR DQGFDAIISI ENSP00000409964/1-532 -HPVENDVTQ TVSSFSLPAS SRSKKLCDVT TGLKIHVSIP NR-IPKIVKE ENSBTAP00000017582/1-527 EHPVEGDNAQ TGNSSSSTTS SRS-KLGNAR VEHKIHLPTP NS-LPQTVKD bmy_00310T0/1-459 EHPIENDNIQ ARNSLSLTTS SRS-KLCDAT VEHKIHLPIP SS-IPKILK- ENSTTRP00000004335/1-435 EHPIENDNIQ ARDSLFLTTS SRS-KLCDAT VEHKIHLPIP SS-IPKIVKE 151 200 BACU005201/1-453 GVIHHF---- --STKQRRIR AIKEMARVLV PGGQLMIYVW AMEQKNRHFE ENSP00000409964/1-532 GEDDYYTDGE ESSDDGKKYH VKSKSAKPST NVKKSIRKKY C-KVSSSSSS ENSBTAP00000017582/1-527 GEHDYYTDGE ESTDDEKKHH VRSKSAKLPN NFKKSLSKKY S---RSSSSS bmy_00310T0/1-459 GERDYYTDGE ESSDDEKNHH VRSKSAKPSN NFKKSXSKKY SISNSSSSSS ENSTTRP00000004335/1-435 GERDYYTDGE ESSDDEKKHH VRSKSAKPSN NFKKSVSKK- --DSRSNSSS 201 250 BACU005201/1-453 KQDVLVPWNK ALCSQP---- -LSESSQ--- PGRKKQCG-- HPERSHPYHP ENSP00000409964/1-532 SLSSSSSGSG TDCLDAGSDS HLSDSSPSSK SSKKHVSGIT LLSPKHKYKS ENSBTAP00000017582/1-527 SLSLSSSSSD TGCSDTGSDV GLSDSSP--- SPKKHLPGAT HLSPKLKYKP bmy_00310T0/1-459 SLSSSSSSSD TDCSNTGSDV CLSDSSP--- SLKKRLSGVT HLPPKQKYKL ENSTTRP00000004335/1-435 SLSSSSSSSD TDCSNTGSDV CLSDSSP--- SLKKRLFGVT HLPPKQKYKL 251 300 BACU005201/1-453 PCSACRC-PV CFKGRWDSRR SHSVDCDSAL AGTCCANISK EGEEENGFYN ENSP00000409964/1-532 GIKSTETQPS STTPKCGHYP EESEDTVTDV SPLSTPDISP LQSFELGIAN ENSBTAP00000017582/1-527 GEKSPGAHAS GTKPKVGDDT EESEDTVTDV TPLSTPDISP VQSFELGASS bmy_00310T0/1-459 GEKSTGAQTS STKPKVGDYT EESEDTVTDV TPLSTPDISP VQSFELV--- ENSTTRP00000004335/1-435 REKSTGAQTS GTKPKVGDYT EESEDTVTDV SPLSTPDISP VQSFELAASN 301 350 BACU005201/1-453 TLGKSFRYWF SSRS---LDE STLRKQIEKM RPLKNTESWA NSTISTQPS- ENSP00000409964/1-532 DQKVKIKKQE NVSQEIYEDV EDLKNNSKYL KAAKKGKEKH EPDVSSKSSS ENSBTAP00000017582/1-527 DRKMKVKRQE NVRQEVYENV EDLKNNSKSL KSAKKGKEKH EPSLTSKST- bmy_00310T0/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004335/1-435 NQKMKVKRQE NVSQEVYENV EDFKNNSKSL KSDKKGKEKH EPSLASVSA- 351 400 BACU005201/1-453 -RHSSFDLDH PEPFSTGEQN LDE--EVFVE TSQKHLEWLR ------APAT ENSP00000409964/1-532 VLDSSLDHRH KQKVLHDTMD LNHLLKAFLQ LDKKGPQKHH FDQPSVAPGK ENSBTAP00000017582/1-527 ALDSSLDHRY KQKVLHDTMD LNHLLKAFLQ LDKKRPQKHH FDQPSVAPRK bmy_00310T0/1-459 -LDSNLDHRY KQKVLHDTMD LNHLLKAFLQ LDKKGPQKHH FDQPSVAPRK ENSTTRP00000004335/1-435 VLDSSLDHRY KEKVLHDTMD LNHLLKAFLQ LDKKGPQKHH FDQPSVAPRK 401 450 BACU005201/1-453 HKHLNGDHPR GVRRNGDGNF LGSTNTKENC MDAGNLE-EG TPSASKIWRR ENSP00000409964/1-532 NYSFTREEVR QIDRENQRLL KELSRQAEKP GSKSTIP-RS ADHPPKLYHS ENSBTAP00000017582/1-527 NYSFTREEVR QIDRENQRLL KELSRQAEKP GSKSMIP-RS TGPPPKLYHS bmy_00310T0/1-459 NYSFTREEVR QIDRENQRLL KELSRQAEKP GSKSTIPRRS TGPPPKLYHS ENSTTRP00000004335/1-435 NYSFTREEVR QIDRENQRLL KELSRQAEKP GSKSTIPRRS TGPPPRLYHS 451 500 BACU005201/1-453 -ISAADSKDS NPGDTISVEE QQSDILDSGA FMRYYHVFRE GELYGLLKES ENSP00000409964/1-532 ALNRQKEQQR IERENLALLK RLEAVKPTVG MKRSEQLMDY HRNMGYLNSS ENSBTAP00000017582/1-527 ALNRQREQQR IERENLAFLK RLEAVKPTVG MKRSEQLMDY HRNMGYLSSS bmy_00310T0/1-459 ALNRQREQQR IERENLALLK RLEAVKPTVG MKRSEQLMDY HRNMGHLSSS ENSTTRP00000004335/1-435 ALNRQREQQR IERENL---- ---------- ---------- ---------- 501 550 BACU005201/1-453 VSELHILSSG NDHGNWCIIA EKKESCD--- ---------- ---------- ENSP00000409964/1-532 PLSRRARSTL GQYSPLR-AS RTSSATSGLS CRSERSAVDP SSGHPRRRPK ENSBTAP00000017582/1-527 PISRRVRSTL SQYSSLKGAS RTSSATSGLS CKSERSAFNT TGGGLLLRPK bmy_00310T0/1-459 PTSRRVRSTL GQYSPLQLGQ CDIT------ ---------- ---------- ENSTTRP00000004335/1-435 ---------- ---------- ---------- ---------- ---------- 551 600 BACU005201/1-453 --------- ENSP00000409964/1-532 PPNVRTAWL ENSBTAP00000017582/1-527 PPNVRTAWL bmy_00310T0/1-459 --------- ENSTTRP00000004335/1-435 ---------