KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:06 2014 Check: 00 .. Name: ENSP00000356975/1-837 Len: 839 Check: 2304 Weight: 1.00 Name: ENSBTAP00000017583/1-839 Len: 839 Check: 2734 Weight: 1.00 Name: ENSTTRP00000008731/1-834 Len: 839 Check: 4356 Weight: 1.00 Name: bmy_06342T0/1-776 Len: 839 Check: 9200 Weight: 1.00 Name: BACU003855/1-815 Len: 839 Check: 9621 Weight: 1.00 // 1 50 ENSP00000356975/1-837 MSQTGSHPGR GLAGRWLWGA QPCLLLPIVP LSWLVWLLLL LLASLLPSAR ENSBTAP00000017583/1-839 MSHMDSHPGR GLADGWLWGI QPRLLLPTVP VSGSRLVWLL LLASLLPSAW ENSTTRP00000008731/1-834 MSRTDSHPGR GLAECCLWGI QPRLLLPSVP VSE---LLLL LLASLLPSAW bmy_06342T0/1-776 MSRTDSHPGR GLAECCLWGI QPRLLLPTVP VSG---PLLL LLASLLPSAW BACU003855/1-815 MSRTDSHPGR GLAECCLWGI QPRLLLPTVP ISG---PLLL LLASLLPSAW 51 100 ENSP00000356975/1-837 LASPLPREEE IVFPEKLNGS VLPGSGAPAR LLCRLQAFGE TLLLELEQDS ENSBTAP00000017583/1-839 PASPLPREEE IVFPEKLNGS VLPGLGAPAR LLYRLPAFGE TLLLELEKDP ENSTTRP00000008731/1-834 PASPLPREEE IVFPEKLNDS VLPGLGTPAR LSYRLPAFGE TLLLELEQDP bmy_06342T0/1-776 PASPLPREEE IVFPEKLNDS VLPGLGTPAR LLYRLPAFGE MLLLELEQDP BACU003855/1-815 PASPLPREEE IVFPEKLNDS VLPGLGTPAR LLYHLPAFGE MLLLELEQDP 101 150 ENSP00000356975/1-837 GVQVEGLTVQ YLGQAPELLG GAEPGTYLTG TINGDPESVA SLHWDGGALL ENSBTAP00000017583/1-839 GVQVEGLTVQ YLGRAPELLG GAEPGTYLTG TINGDPESVA SLHWDGGALL ENSTTRP00000008731/1-834 GVRVEGLTVQ YLGRAPELLG GAEPGTYFTG TINGDPESVA SLHWDGGALL bmy_06342T0/1-776 GVRVEGLTVQ YLGRAPELLG GAEPGTYLTG TINGDPESVA SLHWDGGALL BACU003855/1-815 GVRVEGLTVQ YLGRAPELLG GAEPGTYLTG TINGDPESVA SLHWDGGALL 151 200 ENSP00000356975/1-837 GVLQYRGAEL HLQPLEGGTP NSAGGPGAHI LRRKSPASGQ GPMCNVKAPL ENSBTAP00000017583/1-839 GVLQYRGTEL HIQPLEGGAP NSAGGPGAHI LRRKSPVSGQ GPMCNVKAPP ENSTTRP00000008731/1-834 GVLQYRGTEL HIQPLEGGTP NSAGGPGAHI LRRKSPASGQ GPICNVQAPP bmy_06342T0/1-776 GVLQYRGTEL HIQPLEGGTP NSAGGPGAHI LRRKSPASGQ GPICNVQAPP BACU003855/1-815 GVLQYRGTEL HIQPLEGGTP NSAGGPGAHI LRRKSPASGQ GPICNVQAPP 201 250 ENSP00000356975/1-837 GSPSPRPRRA KRFASLSRFV ETLVVADDKM AAFHGAGLKR YLLTVMAAAA ENSBTAP00000017583/1-839 GKPSPSPRRA KRFASLSRFV ETLVVADDKM AAFHGAGLKR YLLTVMAAAA ENSTTRP00000008731/1-834 GSPSSSPRRA KRFASVSRFV ETLVVADDKM AAFHGAGLKR YLLTVMAAAA bmy_06342T0/1-776 GNPSSSPRRA KRFASLSRFV ETLVVADDKM AAFHGGGLKR YLLTVMAAAA BACU003855/1-815 GNPSSSPRRA KRFASLSRFV ETLVVADDKM AAFHGGGLKR YLLTVMAAAA 251 300 ENSP00000356975/1-837 KAFKHPSIRN PVSLVVTRLV ILGSGEEGPQ VGPSAAQTLR SFCAWQRGLN ENSBTAP00000017583/1-839 KAFKHPSIRN PVSLVVTRLV VLGPGEEGPQ VGPSAAQTLR SFCAWQRGLN ENSTTRP00000008731/1-834 KAFKHPSIRN PVSLVVTRLV ILGPGEEGPQ VGPSAAQTLR SFCAWQRGLN bmy_06342T0/1-776 KAFKHPSIRN PVSLVVTRLV ILGPGEEGP- ---------- ---------- BACU003855/1-815 KAFKHPSIRN PVSLVVTRLV ILGPGEEGPQ VGPSAAQTLR SFCAWQRGLN 301 350 ENSP00000356975/1-837 TPEDSDPDHF DTAILFTRQD LCGVSTCDTL GMADVGTVCD PARSCAIVED ENSBTAP00000017583/1-839 TPDDADPGHF DTAILFTRQD LCGVSTCDTL GMADVGTVCD PARSCAIVED ENSTTRP00000008731/1-834 TPEDSDPDHF DTAILFTRQD LCGVSTCDTL GMADVGTVCD PARSCAIVED bmy_06342T0/1-776 ---------- --------QD LCGVSTCDTL GMADVGTVCD PARSCAIVED BACU003855/1-815 TPEDSDPDHF DTAILFTRQD LCGVSTCDTL GMADVGTVCD PARSCAVVED 351 400 ENSP00000356975/1-837 DGLQSAFTAA HELGHVFNML HDNSKPCISL NGPLSTSRHV MAPVMAHVDP ENSBTAP00000017583/1-839 DGLQSAFTAA HELGHVFSML HDNSKQCTGL NGPESTSRHV MAPVMAHVDP ENSTTRP00000008731/1-834 DGLQSAFTAA HELGHVFNML HDNSKPCAGL NGPGSTSRHV MAPVMAHVDP bmy_06342T0/1-776 DGLQSAFTAA HELGHVFNML HDNSKPCVGL NGPGSTSRHV MAPVMAHVDP BACU003855/1-815 DGLQSAFTAA HELGHVFNML HDNSKPCVGL NGPGSTSRHV MAPVMAHVDP 401 450 ENSP00000356975/1-837 EEPWSPCSAR FITDFLDNGY GHCLLDKPEA PLHLPVTFPG KDYDADRQCQ ENSBTAP00000017583/1-839 EEPWSPCSAR FITDFLDNGF GHCLLDKPEA PLHLPVTFPG KDYDADRQCQ ENSTTRP00000008731/1-834 EEPWSPCSAR FITDFLDNGY GHCLLDKPEA PLHLPVTFPG KDYDADRQCQ bmy_06342T0/1-776 EEPWSPCSAR FITDFLDNGY GQCLLDKPEA PLHLPVTFPG KDYDADRQCQ BACU003855/1-815 EEPWSPCSAR FITDFLDNGY GHCLLDKPEA PLHLPVTFPG KDYDADHQCQ 451 500 ENSP00000356975/1-837 LTFGPDSRHC PQLPPPCAAL WCSGHLNGHA MCQTKHSPWA DGTPCGPAQA ENSBTAP00000017583/1-839 LTFGPDSRHC PQLPPPCAAL WCSGHLNGHA MCQTKHSPWA DGTPCGPAQA ENSTTRP00000008731/1-834 LTFGPDSRHC PQLPPPCAAL WCSGHLNGHS MCQTKHSPWA DGTPCGPAQA bmy_06342T0/1-776 LTFGPDSRHC PQLPPPCAAL WCSGHLNGHS MCQTKHSPWA DGTPCGPAQA BACU003855/1-815 LTFGPDSRHC PQLPPPCAAL WCSGHLNGHS MCQTKHSPWA DGTPCGPAQA 501 550 ENSP00000356975/1-837 CMGGRCLHMD QLQDFNIPQA GGWGPWGPWG DCSRTCGGGV QFSSRDCTRP ENSBTAP00000017583/1-839 CMGGRCLHVD QLQAFNVPQA GGWGPWGSWG DCSRSCGGGV QFSSRDCTRP ENSTTRP00000008731/1-834 CMGGRCLHVD QLQDFNIPQA GGWGPWGSWG DCSRSCGGGV QFSSRDCTRP bmy_06342T0/1-776 CMGGRCLHVD QLQDFNIPQA GGWGPWGSWG DCSRSCGGGV QFSSRDCTRP BACU003855/1-815 CMGGRCLHVD QLQDFNIPQA GGWGPWGSWG DCSRSCGGGV QFSSRDCTRP 551 600 ENSP00000356975/1-837 VPRNGGKYCE GRRTRFRSCN TEDCPTGSAL TFREEQCAAY NHRTDLFKSF ENSBTAP00000017583/1-839 VPRNGGKYCE GRRTRFRSCN TQDCPTGSAL TFREEQCAAY NHRTDLFKNF ENSTTRP00000008731/1-834 IPRNGGKYCE GRHTRFRSCN TQDCPTGSAL TFREEQCAAY NHRTDLFKNF bmy_06342T0/1-776 IPRNGGKYCE GRHTRFRSCN TQDCPTGSAL TFREEQCAAY NHRTDLFKNF BACU003855/1-815 IPRNGGKYCE GRHTRFRSCN TQDCPTGSAL TFREEQCAAY NHRTDLFKNF 601 650 ENSP00000356975/1-837 PGPMDWVPRY TGVAPQDQCK LTCQAQALGY YYVLEPRVVD GTPCSPDSSS ENSBTAP00000017583/1-839 PGPMDWVPRY TGVAPRDQCK LTCQTRALGY YYVLDPRVAD GTPCSPDSSS ENSTTRP00000008731/1-834 PGPMDWVPRY TGVAPRDQCK LTCQARALGY YYVLEPRVVD GTPCSPDSSS bmy_06342T0/1-776 PGPMDWVPRY TGVAPRDQCK LTCQARALGY YYVLEPRVVD GTPCSPDSSS BACU003855/1-815 PGPMDWVPRY TGVAPRDQCK LTCQARALGY YYVLEPRVVD GTPCSPDSSS 651 700 ENSP00000356975/1-837 VCVQGRCIHA GCDRIIGSKK KFDKCMVCGG DGSGCSKQSG SFRKFRYGYN ENSBTAP00000017583/1-839 VCVQGRCIHA GCDRVIGSKK KFDKCMVCGG DGSSCSKQSG SFKKFRYGYN ENSTTRP00000008731/1-834 VCVRGRCIHA GCDRVIGSKK KFDKCMVCGG DGSSCSKQSG SFRKFRYGYN bmy_06342T0/1-776 VCVQGRCIHA GCDRVIGSKK KFDKCMV--- ---------- ------YGYN BACU003855/1-815 VCVQGRCIHA GCDRVIGSKK KFDKCMV--- ---------- ------YGYN 701 750 ENSP00000356975/1-837 NVVTIPAGAT HILVRQQGNP GHRSIYLALK LPDGSYALNG EYTLMPSPTD ENSBTAP00000017583/1-839 NVVTIPAGAT HILVRQQGSP SVRSLYLALK LPDGSYALNG EYTLIPSPTD ENSTTRP00000008731/1-834 DVVTIPAGAT HILVRQQGSP GVRSLYLALK LPDGSYALNG EYTLIPSPTD bmy_06342T0/1-776 NVVTIPAGAT HILVRQQGTP GVRSLYLALK LPDGSYALNG EYTLIPSPTD BACU003855/1-815 NVVTIPAGAT HILVRQQGTP GVRSLYLALK LPDGSYALNG EYTLIPSATD 751 800 ENSP00000356975/1-837 VVLPGAVSLR YSGATAASET LSGHGPLAQP LTLQVLVAGN PQDTRLRYSF ENSBTAP00000017583/1-839 VVLPGAVSLR YSGATAASET LSGHGPLAEP LTLQVLVAGN PQNARLRYSF ENSTTRP00000008731/1-834 VVLPGAVSLR YSGATAASET LSGHGPLAQP LTLQVLVAGN PQNVRLRYSF bmy_06342T0/1-776 VVLPGAVSLR YSGATAASET LSGHGPLAQP LTLQVLVAGN PQNVRLRYSF BACU003855/1-815 VVLPGAVSLR YSGATAASET LSGHGPLAQP LTLQVLVAGN PENVRLRYSF 801 850 ENSP00000356975/1-837 FVP--RPTPS TPRPTPQDWL HRRAQILEIL RRRPWAGRK ENSBTAP00000017583/1-839 FVPRPRPVPS TPRPTPQDWL RRKSQILEIL SRKSSGGRK ENSTTRP00000008731/1-834 FVP--WPTPS TPRPPPQDWV HRKAQILEIL RRRSWAGRK bmy_06342T0/1-776 FVP--WPAPS TPRPPPQDWL HRKAQILEIL RRRSWAGRK BACU003855/1-815 FVP--WPAPS TPRPPPQDWL HRKAQILEIL RRRSWAGRK