KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:07 2014 Check: 00 .. Name: BACU007921/1-913 Len: 1000 Check: 3220 Weight: 1.00 Name: ENSBTAP00000017588/1-874 Len: 1000 Check: 1801 Weight: 1.00 Name: ENSP00000325002/1-874 Len: 1000 Check: 4470 Weight: 1.00 Name: bmy_09950T0/1-939 Len: 1000 Check: 34 Weight: 1.00 Name: ENSTTRP00000014469/1-874 Len: 1000 Check: 3733 Weight: 1.00 // 1 50 BACU007921/1-913 MLKKFDKKDE ESVEQVRRSV LEPGILEWSR RSGGNRRQSD TE-------- ENSBTAP00000017588/1-874 MLKKFDKKDE ES-------- ---------- -GGGSNPFQH LEKSAVLQE- ENSP00000325002/1-874 MLKKFDKKDE ES-------- ---------- -GGGSNPFQH LEKSAVLQE- bmy_09950T0/1-939 MLKKFDKKDE EL-------- ---------- -GGGSNPFQH LEKSAVLQEA ENSTTRP00000014469/1-874 MLKKFDKKDE ES-------- ---------- -GGGSNPFQH LEKSAVLQE- 51 100 BACU007921/1-913 -ARVFNETPI NPRKCAHILT KILYLINQGE HLGTTEATEA FFAMTKLFQS ENSBTAP00000017588/1-874 -ARVFNETPI NPRKCAHILT KILYLINQGE HLGTTEATEA FFAMTKLFQS ENSP00000325002/1-874 -ARVFNETPI NPRKCAHILT KILYLINQGE HLGTTEATEA FFAMTKLFQS bmy_09950T0/1-939 SARVFNETPI NPRKCAHILT KILYLINQGE HLGTTEATEA FFAMTKLFQS ENSTTRP00000014469/1-874 -ARVFNETPI NPRKCAHILT KILYLINQGE HLGTTEATEA FFAMTKLFQS 101 150 BACU007921/1-913 NDPTLRRMCY LTIKEMSCIA EDVIIVTSRR VLVSEGSTDT EPIFSRAPGA ENSBTAP00000017588/1-874 NDPTLRRMCY LTIKEMSCIA EDVIIVTSS- ---------- ---------- ENSP00000325002/1-874 NDPTLRRMCY LTIKEMSCIA EDVIIVTSS- ---------- ---------- bmy_09950T0/1-939 NDPTLRRMCY LTIKEMSCIA EDVIIVTSRR VLVSEGSTDT EPIFSRAPGA ENSTTRP00000014469/1-874 NDPTLRRMCY LTIKEMSCIA EDVIIVTSS- ---------- ---------- 151 200 BACU007921/1-913 QTSADALTKD MTGKEDSYRG PAVRALCQIT DSTMLQAIER YMKQAIVDKV ENSBTAP00000017588/1-874 ------LTKD MTGKEDSYRG PAVRALCQIT DSTMLQAIER YMKQAIVDKV ENSP00000325002/1-874 ------LTKD MTGKEDNYRG PAVRALCQIT DSTMLQAIER YMKQAIVDKV bmy_09950T0/1-939 QTSADVLTKD MTGKEDSYRG PAVRALCQIT DSTMLQAIER YMKQAIVDKV ENSTTRP00000014469/1-874 ------LTKD MTGKEDSYRG PAVRALCQIT DSTMLQAIER YMKQAIVDKV 201 250 BACU007921/1-913 PSVSSSALVS SLHLLKCSFD VVKRWVNEAQ EAASSDNIMV QYHALGLLYH ENSBTAP00000017588/1-874 PSVSSSALVS SLHLLKCSFD VVKRWVNEAQ EAASSDNIMV QYHALGLLYH ENSP00000325002/1-874 PSVSSSALVS SLHLLKCSFD VVKRWVNEAQ EAASSDNIMV QYHALGLLYH bmy_09950T0/1-939 PSVSSSALVS SLHLLKCSFD VVKRWVNEAQ EAASSDNIMV QYHALGLLYH ENSTTRP00000014469/1-874 PSVSSSALVS SLHLLKCSFD VVKRWVNEAQ EAASSDNIMV QYHALGLLYH 251 300 BACU007921/1-913 VRKNDRLAVS KMISKFTRHG LKSPFAYCMM IRVASRQLEE EDGSRDSPLF ENSBTAP00000017588/1-874 VRKNDRLAVS KMISKFTRHG LKSPFAYCMM IRVASRQLED EDGSRDSPLF ENSP00000325002/1-874 VRKNDRLAVN KMISKVTRHG LKSPFAYCMM IRVASKQLEE EDGSRDSPLF bmy_09950T0/1-939 VRKNDRLAVS KMISKFTRHG LKSPFAYCMM IRVASRQLEE EDGSRDSPLF ENSTTRP00000014469/1-874 VRKNDRLAVS KMISKFTRHG LKSPFAYCMM IRVASRQLEE EDGSRDSPLF 301 350 BACU007921/1-913 DFIESCLRNK HEMVVYEAAS AIVNLPGCSA KELAPAVSVL QLFCSSPKAA ENSBTAP00000017588/1-874 DFIESCLRNK HEMVVYEAAS AIVNLPGCSA KELAPAVSVL QLFCSSPKAA ENSP00000325002/1-874 DFIESCLRNK HEMVVYEAAS AIVNLPGCSA KELAPAVSVL QLFCSSPKAA bmy_09950T0/1-939 DFIESCLRNK HEMVVYEAAS AIVNLPGCSA KELAPAVSVL QLFCSSPKAA ENSTTRP00000014469/1-874 DFIESCLRNK HEMVVYEAAS AIVNLPGCSA KELAPAVSVL QLFCSSPKAA 351 400 BACU007921/1-913 LRYAAVRTLN KVAMKHPSAV TACNLDLENL VTDSNRSIAT LAITTLLKTG ENSBTAP00000017588/1-874 LRYAAVRTLN KVAMKHPSAV TACNLDLENL VTDANRSIAT LAITTLLKTG ENSP00000325002/1-874 LRYAAVRTLN KVAMKHPSAV TACNLDLENL VTDSNRSIAT LAITTLLKTG bmy_09950T0/1-939 LRYAAVRTLN KVAMKHPSAV TACNLDLENL VTDSNRSIAT LAITTLLKTG ENSTTRP00000014469/1-874 LRYAAVRTLN KVAMKHPSAV TACNLDLENL VTDSNRSIAT LAITTLLKTG 401 450 BACU007921/1-913 SEGSIDRLMK QISSFMSEIS DEFKVVVVQA ISALCQKYPR KHAVLMNFLF ENSBTAP00000017588/1-874 SEGSIDRLMK QISSFMSEIS DEFKVVVVQA ISALCQKYPR KHAVLMNFLF ENSP00000325002/1-874 SESSIDRLMK QISSFMSEIS DEFKVVVVQA ISALCQKYPR KHAVLMNFLF bmy_09950T0/1-939 SEGSIDRLMK QISSFMSEIS DEFKVVVVQA ISALCQKYPR KHAVLMNFLF ENSTTRP00000014469/1-874 SEGSIDRLMK QISSFMSEIS DEFKVVVVQA ISALCQKYPR KHAVLMSFLF 451 500 BACU007921/1-913 SMLREEGGFE YKRAIVDCII CIIEENAESK ETGLSHLCEF IEDCEFTVLA ENSBTAP00000017588/1-874 SMLREEGGFE YKRAIVDCII SIIEENAESK ETGLSHLCEF IEDCEFTVLA ENSP00000325002/1-874 TMLREEGGFE YKRAIVDCII SIIEENSESK ETGLSHLCEF IEDCEFTVLA bmy_09950T0/1-939 SMLREEGGFE YKRAIVDCII CIIEENAESK ETGLSHLCEF IEDCEFTVLA ENSTTRP00000014469/1-874 SMLREEGGFE YKRAIVDCII SIIEENSESK ETGLSHLCEF IEDCEFTVLA 501 550 BACU007921/1-913 TRILHLLGQE GPKTNNPSKY IRFIYNRVVL EHEEVRAGAV SALAKFGAQN ENSBTAP00000017588/1-874 TRILHLLGQE GPRTSNPSKY IRFIYNRVVL EHAEVRAGAV SALAKFGAQN ENSP00000325002/1-874 TRILHLLGQE GPKTTNPSKY IRFIYNRVVL EHEEVRAGAV SALAKFGAQN bmy_09950T0/1-939 TRILHLLGQE GPKTNNPSKY IRFIYNRVVL EHEEVRAGAV SALAKFGAQN ENSTTRP00000014469/1-874 TRILHLLGQE GPKTNNPSKY IRFIYNRVVL EHEEVRAGAV SALAKFGAQN 551 600 BACU007921/1-913 EEMLPSILVL LKRCVMDDDN EVRDRATFYL SVLAQKQKAL NAGYILNGLT ENSBTAP00000017588/1-874 EEMLPSILVL LKRCVMDDDN EVRDRATFYL NVLEQKQKAL NAGYILNGLA ENSP00000325002/1-874 EEMLPSILVL LKRCVMDDDN EVRDRATFYL NVLEQKQKAL NAGYILNGLT bmy_09950T0/1-939 EEMLPSILVL LKRCVMDDDN EVRDRATFYL SVLAQKQKAL NAGYILN--- ENSTTRP00000014469/1-874 EEMLPSILVL LKRCVMDDDN EVRDRATFYL SVLEQKQKAL NAGYILNGLT 601 650 BACU007921/1-913 VSIPGLERAL QQYTLEPSEK PFDLKSVPLA TTPMAEQRTE STPITAAKQP ENSBTAP00000017588/1-874 VSIPGLERAL QQYTLEPSEK PFDLKSVPLA TAPLAEQRTE STPVTAAKQP ENSP00000325002/1-874 VSIPGLERAL QQYTLEPSEK PFDLKSVPLA TAPMAEQRTE STPITAVKQP bmy_09950T0/1-939 ---------- ---------- ---------- ---------E STPITAAKQP ENSTTRP00000014469/1-874 VSIPGLERAL QQYTLEPSEK PFDLKSVPLA TTPMAEQRTE STPITAAKQP 651 700 BACU007921/1-913 EKVAATRQEI FQEQLAAVPE LQGLGPLFKS SPEPVALTES ETEYVIRCTK ENSBTAP00000017588/1-874 EKVAATRQEI FQEQLAAVPE FQGLGPLFKS SPEPVALTES ETEYVIRCTK ENSP00000325002/1-874 EKVAATRQEI FQEQLAAVPE FRGLGPLFKS SPEPVALTES ETEYVIRCTK bmy_09950T0/1-939 EKVAATRQEI FQEQLAAVPE FQGLGPLFKS SPEPVALTES ETEYVIRCTK ENSTTRP00000014469/1-874 EKVAATRQEI FQEQLAAVPE FQGLGPLFKS SPEPVALTES ETEYVIRCTK 701 750 BACU007921/1-913 HTFPEHMVFQ FDCTNTLNDQ TLENVTVQME PTEAYEVLCY VPARSLPYNQ ENSBTAP00000017588/1-874 HTFTDHMVFQ FDCTNTLNDQ TLENVTVQME PTEAYEVLCY VPARSLPYNQ ENSP00000325002/1-874 HTFTNHMVFQ FDCTNTLNDQ TLENVTVQME PTEAYEVLCY VPARSLPYNQ bmy_09950T0/1-939 HTFPEHMVFQ FDCTNTLNDQ TLENVTVQLE PTEAYEVLCY VPARSLPYNQ ENSTTRP00000014469/1-874 HTFPEHMVFQ FDCTNTLNDQ TLENVTVQME PTEAYEVLCY VPARSLPYNQ 751 800 BACU007921/1-913 PGTCYTLVAL PKEDPTAVGC TFSCVMKFTV KDCDPTTGET DDEGYEDEYV ENSBTAP00000017588/1-874 PGTCYTLVAL PKEDPTAVAC TFSCVMKFTV KDCDPTTGEA DDEGYEDEYV ENSP00000325002/1-874 PGTCYTLVAL PKEDPTAVAC TFSCMMKFTV KDCDPTTGET DDEGYEDEYV bmy_09950T0/1-939 PGTCYTLVAL PKEDPTAVGC TFSCMMKFTV KDCDPTTGET DDEGYEDEYV ENSTTRP00000014469/1-874 PGTCYTLVAL PKEDPTAVGC TFSCMMKFTV KDCDPTTGET DDEGYEDEYV 801 850 BACU007921/1-913 LEDLEVTVAD HIQKVMKLNF EAAWDEVGDE FEKEETFTLS TIKTLE---- ENSBTAP00000017588/1-874 LEDLEVTIAD HIQKVMKLNF EAAWDEVGDE FQKEETFTLS TIKTLE---- ENSP00000325002/1-874 LEDLEVTVAD HIQKVMKLNF EAAWDEVGDE FEKEETFTLS TIKTLE---- bmy_09950T0/1-939 LEDLEVTVAD HIQKVMKLNF EAAWDEVGDE FEKEETFTLS TIKTLEGKSW ENSTTRP00000014469/1-874 LEDLEVTIAD HIQKVMKLNF EAAWDEVGDE FEKEETFTLS TIKTLE---- 851 900 BACU007921/1-913 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017588/1-874 ---------- ---------- ---------- ---------- ---------- ENSP00000325002/1-874 ---------- ---------- ---------- ---------- ---------- bmy_09950T0/1-939 GCHFRLACLT RSLATVEELP PSPTPKSPKI QGHVWSTYFR CHFIKNCRVG ENSTTRP00000014469/1-874 ---------- ---------- ---------- ---------- ---------- 901 950 BACU007921/1-913 ---------- ---------- ----EAVGNI VKFLGMHPCE RSDKVPDNKN ENSBTAP00000017588/1-874 ---------- ---------- ----EAVGNI VKFLGMHPCE RSDKVPDNKN ENSP00000325002/1-874 ---------- ---------- ----EAVGNI VKFLGMHPCE RSDKVPDNKN bmy_09950T0/1-939 SGDGGVVVAP RGDRGLITLG FLPTEAVGNI VKFLGMHPCE RSDKVPDNKN ENSTTRP00000014469/1-874 ---------- ---------- ----EAVGNI VKFLGMHPCE RSDRVPDNKN 951 1000 BACU007921/1-913 THTLLLAGVF RGGHDILVRS RLLLLDTVTM QVTARSSEEL PVDIILASVG ENSBTAP00000017588/1-874 THTLLLAGVF RGGHDILVRS RLLLLDTVTM QVTARSSEEL PVDIVLASVG ENSP00000325002/1-874 THTLLLAGVF RGGHDILVRS RLLLLDTVTM QVTARSLEEL PVDIILASVG bmy_09950T0/1-939 THTLLLAGVF RGGHDILVRS RLLLLDTVTM QVTARSSEEL PVDIILASVG ENSTTRP00000014469/1-874 THTLLLAGVF RGGHDILVRS RLLLLDTVTM QVTARSSEEL PVDIVLASVG