KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:08 2014 Check: 00 .. Name: ENSP00000217043/1-253 Len: 253 Check: 2191 Weight: 1.00 Name: ENSBTAP00000017591/1-251 Len: 253 Check: 3888 Weight: 1.00 Name: bmy_08765T0/1-197 Len: 253 Check: 865 Weight: 1.00 Name: ENSTTRP00000012329/1-252 Len: 253 Check: 544 Weight: 1.00 Name: BACU015476/1-241 Len: 253 Check: 6290 Weight: 1.00 // 1 50 ENSP00000217043/1-253 MPLLPSTVGL AGLLFWAGQA VNALIMPNAT PAPAQPESTA MRLLSGLEVP ENSBTAP00000017591/1-251 LSVVSASFSL F-LLSVSCQT MNAL-MPNTT LALTQTKGTA VRPLSGLGVP bmy_08765T0/1-197 MPLLPGTVGL AGLLFWAGQT MNAL-MPNAT LALAQTEGTA VRPLTGLGVP ENSTTRP00000012329/1-252 MPLLPGTVGL AGLFFWAGQT MNALMMPNAT LALAQTEGTA VRPLTGLGVP BACU015476/1-241 MPLLPGTVGL AGLLFWAGQT MNTL-MPNAT LALAQTDGTA VRPLTSLGVP 51 100 ENSP00000217043/1-253 RYRRKRHISV RDMNALLDYH NHIRASVYPP AANMEYMVWD KRLARAAEAW ENSBTAP00000017591/1-251 RYRRKRHISA RDMSALLDYH NHIRASVHPP AANMEYMVWD ERLARSAEAW bmy_08765T0/1-197 RYRRKRHISA RDMSALLDYH NHIRASVHPP AANMEYMVWD KRLARSAEAW ENSTTRP00000012329/1-252 RYRRKRHISA RDMSALLDYH NHIRASVHPP AANMEYMVWD ERLARSAEAW BACU015476/1-241 RYRRKRHISA RDMSALLDYH NHIRASVHPP AANMEYMVWD KRLARSAEAW 101 150 ENSP00000217043/1-253 ATQCIWAHGP SQLMRYVGQN LSIHSGQYRS VVDLMKSWSE EKWHYLFPAP ENSBTAP00000017591/1-251 ASQCIWAHGP SQLMRYVGQN LSVHSGRYRS VVDLVKSWSE EKRHYLFPAP bmy_08765T0/1-197 ATQCIWAHGP SQLMRYVGQN LSIHSGRYRS VVDLVKSWSE EKRHYLFPVP ENSTTRP00000012329/1-252 ATQCIWAHGP SQLLRYVGQN LSIHSGRYRS VVDLVKSWSE EKRHYLFPAP BACU015476/1-241 ATQCIWAHGP SQLMRYVGQN LSIHSGRYRS VVDLVKSWSE EKRHYLFPVP 151 200 ENSP00000217043/1-253 RDCNPHCPWR CDGPTCSHYT QMVWASSNRL GCAIHTCSSI SVWGNTWHRA ENSBTAP00000017591/1-251 KDCTPRCPWR CSGPVCSHYT QMVWASSNRL GCAIHTCGSI RVWGSTWRQA bmy_08765T0/1-197 KDCTPRCPLR CSGPVCSHYT Q--------- ---VHLCWDV ---GLMREQI ENSTTRP00000012329/1-252 KDCTPRCPWR CSGPVCSHYT QMVWASSNRL GCAIHTCGSI HVLGSTWHQA BACU015476/1-241 KDCTPRCPLR CSGPVCSHYT QMVWASSNRL GCAIHTCGSI RVLGSTWHQA 201 250 ENSP00000217043/1-253 AYLVCNYAIK GNWIGESPYK MGKPCSSCPP SYQGSCNSNM CFKGLKSNKF ENSBTAP00000017591/1-251 VYLVCNYAIK GNWIGEAPYK TGRPCSACPP IYQGSCSSNM CFSRRKSNKL bmy_08765T0/1-197 LYL----RRK RMWWDSN--- ---------- ---------- ---------- ENSTTRP00000012329/1-252 VYLVCNYAIK GNWIGEAPYK KGRPCSACPP SYQGSCNSNM CF-GLKSNRL BACU015476/1-241 VYLVCNYAIK GNWIGEAPYK MGRPCSACPP SYQGSCNSNM CF-------- 251 300 ENSP00000217043/1-253 TWF ENSBTAP00000017591/1-251 LWF bmy_08765T0/1-197 --- ENSTTRP00000012329/1-252 PWF BACU015476/1-241 ---