KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 17:02:13 2014 Check: 00 ..
Name: ENSBTAP00000017614/1-572 Len: 634 Check: 2251 Weight: 1.00
Name: ENSTTRP00000002329/1-476 Len: 634 Check: 6903 Weight: 1.00
Name: bmy_20659T0/1-533 Len: 634 Check: 9060 Weight: 1.00
Name: BACU005357/1-572 Len: 634 Check: 7694 Weight: 1.00
//
1 50
ENSBTAP00000017614/1-572 MDREPPEPSA GVISVPSQPP SEPSGPGPQV PSAGGDS--- ----------
ENSTTRP00000002329/1-476 MDREPYEPSA GVVSVPRQPP SEHSGSGPQG PSMGGDSXXX XXXXXXXXXX
bmy_20659T0/1-533 ---------- ---------- ---------- ---------- ----------
BACU005357/1-572 MDREPHESSV GVVSVPHQPP SEHSGSGPQG PSMGGDS--- ----------
51 100
ENSBTAP00000017614/1-572 ---------- ---------- ---------- ---------- ---------G
ENSTTRP00000002329/1-476 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
bmy_20659T0/1-533 ---------- ---------- ---------- ---------- ----------
BACU005357/1-572 ---------- ---------- ---------- ---------- ---------G
101 150
ENSBTAP00000017614/1-572 TMSQDTEVDM KEVELNELEP EKQPMNAASG AAMAVVVAGG TEKNGLVKIK
ENSTTRP00000002329/1-476 TMSQDAEVDM KEVELNELEP EKQPMNAASG AAVAVAVAGG TEKNGLVKIK
bmy_20659T0/1-533 -MSQDAEVDM KEVELNELEP EKQPMNAASG AAVAVAVAGG TEKNGLVKIK
BACU005357/1-572 TMSQDAEVDM KEVELNELEP EKQPMNAASG AAVAVAVAGG TEKNGLVKIK
151 200
ENSBTAP00000017614/1-572 VADDEADAAA EAKFTGLSKE ELLKVAGSPA WVRTRWALLL LFWLGWLGML
ENSTTRP00000002329/1-476 VADDEADAAA AAKFTGLSKE ELLKVAGRPG WVRTRWALLL LFWLGWLGML
bmy_20659T0/1-533 VADDEADAAA AAKFTGLSKE ELLKVAGSPG WVRTRWALLL LFWLGWLGML
BACU005357/1-572 VADDEADAAA AAKFTGLSKE ELLKVAGSPG WVRTRWALLL LFWLGWLGML
201 250
ENSBTAP00000017614/1-572 AGAVVIIVQA PRCRELPEQR WWHKGALYRI GDLRAFLGQE AGNLADLKER
ENSTTRP00000002329/1-476 AGAVVIIVRA PRCRELPAMS WWHKGALYRI GDLQAFQGRD AGDLVGLKGR
bmy_20659T0/1-533 AGAVVIIVRA PRCRELPAMS WWHKGALYRI GDLQAFQGRD AGDLVGLKGR
BACU005357/1-572 AGAVVIIVRA PRCRELPAMS WWHKGALYRI GDLQAFQGRD AGDLVGLKGR
251 300
ENSBTAP00000017614/1-572 MDYLSTLKVK GFVLGPIHKN QEDDLTETNL EQIDPIFGSK EDFESLLHSA
ENSTTRP00000002329/1-476 LDYLSTLKVK GFVLGPIHQN QKDDLTGTNL EQIAPTFGSK EDFDSLLQSA
bmy_20659T0/1-533 LDYLSTLKVK GFVLGPIHKN QKDDLTGTNL EQIAPTFGSK EDFDSLLQSA
BACU005357/1-572 LDYLSTLKVK GFVLGPIHEN QKDDLTGTNL EQIAPTFGSK EDFDSLLQSA
301 350
ENSBTAP00000017614/1-572 KKKSIRVILD LTPNYKGQNP WFQSIQIDTV AIKMKEALRF WLQTGVDGFQ
ENSTTRP00000002329/1-476 KKKSIRVILD LTPNYKGQNL WFHSTQIDTV ATKVKEALRF WLQAGVDGFQ
bmy_20659T0/1-533 KKKGIRVILD LTPNYKGQNL WFHSTQIDTV ATKVKEALRF WLQAGVDGFQ
BACU005357/1-572 KKKSIRVILD LTPNYKGQNL WFHSTQIDTV ATKVKEALRF WLQAGVDGFQ
351 400
ENSBTAP00000017614/1-572 VRDVQNLTNP SSFLAEWQNI TKSVSEDRLL IAGTDSSDLQ QILRLLEPTR
ENSTTRP00000002329/1-476 VRDVGNLTDA SS-LAEWQNI TKSFSED--- ------SDLQ QILSLLDSTK
bmy_20659T0/1-533 VRDVGNLTDA PSFLAEWQNI TKSFSEDRLL IAGTDSSDLQ QILSLLESTE
BACU005357/1-572 VRDVGNLTDA PSFLAEWQNI TKSFSEDRLL IAGTDSSDLQ QILSLLEPTE
401 450
ENSBTAP00000017614/1-572 DLLLTSSYLS HSSLTGNHTN FLVTQYLDAF GSNWCSWSVS QAGLLTSFVS
ENSTTRP00000002329/1-476 DLLLTSSYLS TSSFTGKHTN FLVTQYLDAF GSRWCSWSLS QSGLLTSFVP
bmy_20659T0/1-533 DLLLTSSYLS TSTFTGKHTN FLVTQYLEAF GSRWCSWSLS QSGLLTSFVP
BACU005357/1-572 DLLLTSSYLS TSTFTGKHTN FLVTQYLDAF GSRWCSWSLS QSGLLTSFVP
451 500
ENSBTAP00000017614/1-572 PQLLRLYQLL FFTLPGTPVF SYGDEIGLEG AGLPGQPVKA PVMLWDESSF
ENSTTRP00000002329/1-476 PQLLRLYQLL LFTLPGTPVF SYGDEIGLEE AALPGQ---- ----------
bmy_20659T0/1-533 PQLLRLYQLL LFTLPGTPVF SYGDEIGLEE AALPGQPVKA PVMLWDESSF
BACU005357/1-572 PHLLRLYQLL LFTLPGTPVF SYGDEIGLEE AALPGQPVKA PVMLWDESSF
501 550
ENSBTAP00000017614/1-572 PNTSASINIS MTVKGQSEDR NSLLSLFRWL SDQRGKERSL LHGDFYDLSS
ENSTTRP00000002329/1-476 ---------- ---------- ---------- ---------- ----------
bmy_20659T0/1-533 PNTSGPVNTT MTVKGQSEEP GSLLSLFRWL SDQRGEERSL LHGDFHALSS
BACU005357/1-572 PNTSGPVNTT MTVKGQSEEP GSLLSLFRWL SDQRGEERSL LHGDFHALSS
551 600
ENSBTAP00000017614/1-572 GPDLFSYIRQ WDQNERFLVV LNFGDVGQLA RLRASSLPTG TSLPARVDLL
ENSTTRP00000002329/1-476 ---------- ---------- ---------- ---------- ----------
bmy_20659T0/1-533 GPDLFAYIRQ WDQNERFLVV LNFGDAGQPA RLGASNLPAG TSLPASVDLL
BACU005357/1-572 GPDLFAYIRQ WDQNERFLIV LNFGDVGQPA RLGASNLPAG TSLPASVDLL
601 650
ENSBTAP00000017614/1-572 LSTQPGREEG TSLELEHLNL QPHEGLLLRF PYVA
ENSTTRP00000002329/1-476 ---------- ---------- ---------- ----
bmy_20659T0/1-533 LSTQPGRKEG APLELEHLNL EPHEGLLLRF PYLA
BACU005357/1-572 LSTQPGRKEG APLELEHLNL EPHEGLLLRF PYVA