KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:02:13 2014 Check: 00 .. Name: ENSBTAP00000017614/1-572 Len: 634 Check: 2251 Weight: 1.00 Name: ENSTTRP00000002329/1-476 Len: 634 Check: 6903 Weight: 1.00 Name: bmy_20659T0/1-533 Len: 634 Check: 9060 Weight: 1.00 Name: BACU005357/1-572 Len: 634 Check: 7694 Weight: 1.00 // 1 50 ENSBTAP00000017614/1-572 MDREPPEPSA GVISVPSQPP SEPSGPGPQV PSAGGDS--- ---------- ENSTTRP00000002329/1-476 MDREPYEPSA GVVSVPRQPP SEHSGSGPQG PSMGGDSXXX XXXXXXXXXX bmy_20659T0/1-533 ---------- ---------- ---------- ---------- ---------- BACU005357/1-572 MDREPHESSV GVVSVPHQPP SEHSGSGPQG PSMGGDS--- ---------- 51 100 ENSBTAP00000017614/1-572 ---------- ---------- ---------- ---------- ---------G ENSTTRP00000002329/1-476 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_20659T0/1-533 ---------- ---------- ---------- ---------- ---------- BACU005357/1-572 ---------- ---------- ---------- ---------- ---------G 101 150 ENSBTAP00000017614/1-572 TMSQDTEVDM KEVELNELEP EKQPMNAASG AAMAVVVAGG TEKNGLVKIK ENSTTRP00000002329/1-476 TMSQDAEVDM KEVELNELEP EKQPMNAASG AAVAVAVAGG TEKNGLVKIK bmy_20659T0/1-533 -MSQDAEVDM KEVELNELEP EKQPMNAASG AAVAVAVAGG TEKNGLVKIK BACU005357/1-572 TMSQDAEVDM KEVELNELEP EKQPMNAASG AAVAVAVAGG TEKNGLVKIK 151 200 ENSBTAP00000017614/1-572 VADDEADAAA EAKFTGLSKE ELLKVAGSPA WVRTRWALLL LFWLGWLGML ENSTTRP00000002329/1-476 VADDEADAAA AAKFTGLSKE ELLKVAGRPG WVRTRWALLL LFWLGWLGML bmy_20659T0/1-533 VADDEADAAA AAKFTGLSKE ELLKVAGSPG WVRTRWALLL LFWLGWLGML BACU005357/1-572 VADDEADAAA AAKFTGLSKE ELLKVAGSPG WVRTRWALLL LFWLGWLGML 201 250 ENSBTAP00000017614/1-572 AGAVVIIVQA PRCRELPEQR WWHKGALYRI GDLRAFLGQE AGNLADLKER ENSTTRP00000002329/1-476 AGAVVIIVRA PRCRELPAMS WWHKGALYRI GDLQAFQGRD AGDLVGLKGR bmy_20659T0/1-533 AGAVVIIVRA PRCRELPAMS WWHKGALYRI GDLQAFQGRD AGDLVGLKGR BACU005357/1-572 AGAVVIIVRA PRCRELPAMS WWHKGALYRI GDLQAFQGRD AGDLVGLKGR 251 300 ENSBTAP00000017614/1-572 MDYLSTLKVK GFVLGPIHKN QEDDLTETNL EQIDPIFGSK EDFESLLHSA ENSTTRP00000002329/1-476 LDYLSTLKVK GFVLGPIHQN QKDDLTGTNL EQIAPTFGSK EDFDSLLQSA bmy_20659T0/1-533 LDYLSTLKVK GFVLGPIHKN QKDDLTGTNL EQIAPTFGSK EDFDSLLQSA BACU005357/1-572 LDYLSTLKVK GFVLGPIHEN QKDDLTGTNL EQIAPTFGSK EDFDSLLQSA 301 350 ENSBTAP00000017614/1-572 KKKSIRVILD LTPNYKGQNP WFQSIQIDTV AIKMKEALRF WLQTGVDGFQ ENSTTRP00000002329/1-476 KKKSIRVILD LTPNYKGQNL WFHSTQIDTV ATKVKEALRF WLQAGVDGFQ bmy_20659T0/1-533 KKKGIRVILD LTPNYKGQNL WFHSTQIDTV ATKVKEALRF WLQAGVDGFQ BACU005357/1-572 KKKSIRVILD LTPNYKGQNL WFHSTQIDTV ATKVKEALRF WLQAGVDGFQ 351 400 ENSBTAP00000017614/1-572 VRDVQNLTNP SSFLAEWQNI TKSVSEDRLL IAGTDSSDLQ QILRLLEPTR ENSTTRP00000002329/1-476 VRDVGNLTDA SS-LAEWQNI TKSFSED--- ------SDLQ QILSLLDSTK bmy_20659T0/1-533 VRDVGNLTDA PSFLAEWQNI TKSFSEDRLL IAGTDSSDLQ QILSLLESTE BACU005357/1-572 VRDVGNLTDA PSFLAEWQNI TKSFSEDRLL IAGTDSSDLQ QILSLLEPTE 401 450 ENSBTAP00000017614/1-572 DLLLTSSYLS HSSLTGNHTN FLVTQYLDAF GSNWCSWSVS QAGLLTSFVS ENSTTRP00000002329/1-476 DLLLTSSYLS TSSFTGKHTN FLVTQYLDAF GSRWCSWSLS QSGLLTSFVP bmy_20659T0/1-533 DLLLTSSYLS TSTFTGKHTN FLVTQYLEAF GSRWCSWSLS QSGLLTSFVP BACU005357/1-572 DLLLTSSYLS TSTFTGKHTN FLVTQYLDAF GSRWCSWSLS QSGLLTSFVP 451 500 ENSBTAP00000017614/1-572 PQLLRLYQLL FFTLPGTPVF SYGDEIGLEG AGLPGQPVKA PVMLWDESSF ENSTTRP00000002329/1-476 PQLLRLYQLL LFTLPGTPVF SYGDEIGLEE AALPGQ---- ---------- bmy_20659T0/1-533 PQLLRLYQLL LFTLPGTPVF SYGDEIGLEE AALPGQPVKA PVMLWDESSF BACU005357/1-572 PHLLRLYQLL LFTLPGTPVF SYGDEIGLEE AALPGQPVKA PVMLWDESSF 501 550 ENSBTAP00000017614/1-572 PNTSASINIS MTVKGQSEDR NSLLSLFRWL SDQRGKERSL LHGDFYDLSS ENSTTRP00000002329/1-476 ---------- ---------- ---------- ---------- ---------- bmy_20659T0/1-533 PNTSGPVNTT MTVKGQSEEP GSLLSLFRWL SDQRGEERSL LHGDFHALSS BACU005357/1-572 PNTSGPVNTT MTVKGQSEEP GSLLSLFRWL SDQRGEERSL LHGDFHALSS 551 600 ENSBTAP00000017614/1-572 GPDLFSYIRQ WDQNERFLVV LNFGDVGQLA RLRASSLPTG TSLPARVDLL ENSTTRP00000002329/1-476 ---------- ---------- ---------- ---------- ---------- bmy_20659T0/1-533 GPDLFAYIRQ WDQNERFLVV LNFGDAGQPA RLGASNLPAG TSLPASVDLL BACU005357/1-572 GPDLFAYIRQ WDQNERFLIV LNFGDVGQPA RLGASNLPAG TSLPASVDLL 601 650 ENSBTAP00000017614/1-572 LSTQPGREEG TSLELEHLNL QPHEGLLLRF PYVA ENSTTRP00000002329/1-476 ---------- ---------- ---------- ---- bmy_20659T0/1-533 LSTQPGRKEG APLELEHLNL EPHEGLLLRF PYLA BACU005357/1-572 LSTQPGRKEG APLELEHLNL EPHEGLLLRF PYVA