KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:15 2014 Check: 00 .. Name: ENSP00000334061/1-1215 Len: 1743 Check: 4506 Weight: 1.00 Name: ENSBTAP00000017618/1-1128 Len: 1743 Check: 9110 Weight: 1.00 Name: ENSTTRP00000004443/1-1141 Len: 1743 Check: 2406 Weight: 1.00 Name: bmy_16631T0/1-1119 Len: 1743 Check: 3608 Weight: 1.00 Name: BACU008482/1-1619 Len: 1743 Check: 9534 Weight: 1.00 // 1 50 ENSP00000334061/1-1215 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017618/1-1128 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004443/1-1141 ---------- ---------- ---------- ---------- ---------- bmy_16631T0/1-1119 ---------- ---------- ---------- ---------- ---------- BACU008482/1-1619 MEGIPGNSPY AGWAYGKTGL YPASTACPTR EDSPPQAPED LDGKGGGSFL 51 100 ENSP00000334061/1-1215 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017618/1-1128 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004443/1-1141 ---------- ---------- ---------- ---------- ---------- bmy_16631T0/1-1119 ---------- ---------- ---------- ---------- ---------- BACU008482/1-1619 ETLKTERLSP DLLTLGPALP SSIPVPSSAY GGPDFSSTFF SPTGSPLNPA 101 150 ENSP00000334061/1-1215 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017618/1-1128 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004443/1-1141 ---------- ---------- ---------- ---------- ---------- bmy_16631T0/1-1119 ---------- ---------- ---------- ---------- ---------- BACU008482/1-1619 AYSSPKLRGT LPLTPCVLSS PTQNPQPSPC RKPCLNLTLT SFSPPPTSVL 151 200 ENSP00000334061/1-1215 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017618/1-1128 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004443/1-1141 ---------- ---------- ---------- ---------- ---------- bmy_16631T0/1-1119 ---------- ---------- ---------- ---------- ---------- BACU008482/1-1619 ILTFSLPQIV SKRAGTQCTN CQTTTTTLWR RNASGDPVCN ACGLYYKLHQ 201 250 ENSP00000334061/1-1215 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017618/1-1128 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004443/1-1141 ---------- ---------- ---------- ---------- ---------- bmy_16631T0/1-1119 ---------- ---------- ---------- ---------- ---------- BACU008482/1-1619 VNRPLTMRKD GIQTRNRKAS GKGKKKRGSS LGAPEVGTVG PHILNTVWKR 251 300 ENSP00000334061/1-1215 --------MT STGQDSTTTR QRRSRQNPQS PPQDSSV--- ---TSKRNIK ENSBTAP00000017618/1-1128 --------MT STGQDSTTPK ERRSRHNPHS PTHDSSI--- ---TSKRGVK ENSTTRP00000004443/1-1141 --------MT STGQDSTTTR QRRSRHNPHP PAHDSSV--- ---TSKRGVK bmy_16631T0/1-1119 --------MT STGQDSTTTR QRRSRHNPHS PPHDSSVTSV RPQTSKRGVK BACU008482/1-1619 VRGEVSPAMT STGQDSTTTR QRRSRHNPHS PPHDSSVTSV RPQTSKRGVK 301 350 ENSP00000334061/1-1215 KGAVPRSIPN LAEVKKKGKM KKLGQAMEED LIVGLQGMDL NLEAEALAGT ENSBTAP00000017618/1-1128 KSAILRSSPS LAEVKKKGRM KKLSQTAEQD LIMGLQGLNL NLESRTLSGT ENSTTRP00000004443/1-1141 KGAILRSSPN LAEVKKKGRM KKLSQAAEQD LVVGLQGLDL NREARTLSGT bmy_16631T0/1-1119 KGAVLRSSPN LAEVKKKGRM KKLSQAAEQD LVVGLQGLDL NREARTPSGT BACU008482/1-1619 KGAVLRSSPN LAEVKKKGRM KKLSQAAEQD LVVGLQGLDL NREARTPSGT 351 400 ENSP00000334061/1-1215 GLVLDEQLNE FHCLWDDSFP EGPERLHAIK EQLIQEGLLD RCVSFQARFA ENSBTAP00000017618/1-1128 GLVFDEQLNE FHCLWDDSFP ERPERLHAIK EQLIQEGLLD RCVSFQARFA ENSTTRP00000004443/1-1141 GLVFDEQLNE FHCLWDDSFP EGPERLHAIK EHLIQEGLLD RCVSFQARFA bmy_16631T0/1-1119 GLVFDEQLNE FHCLWDDSFP EGPERLHAIK EQLIQEGLLD RCVSFQARFA BACU008482/1-1619 GLVFDEQLNE FHCLWDDSFP EGPERLHAIK EQLIQEGLLD RCVSFQARFA 401 450 ENSP00000334061/1-1215 EKEELMLVHS LEYIDLMETT QYMNEGELRV LADTYDSVYL HPNSYSCACL ENSBTAP00000017618/1-1128 EKEELMLVHS LEYIDLMETT QYMNEEELHV LADTYDSVYL HPNSYTCACL ENSTTRP00000004443/1-1141 EKEELMLVHS LEYIDLMETT QYMNEGELRV LADTYDSVYL HPNSYTCACL bmy_16631T0/1-1119 EKEELMLVHS LEYIDLMETT QYMNEGELRV LADTYDSVYL HPNSYTCACL BACU008482/1-1619 EKEELMLVHS LEYIDLMETT QYMNEGELRV LADTYDSVYL HPNSYTCACL 451 500 ENSP00000334061/1-1215 ASGSVLRLVD AVLGAEIRNG MAIIRPPGHH AQHSLMDGYC MFNHVAVAAR ENSBTAP00000017618/1-1128 ASGSVLRLVD AVLEAEIRNG MAIIRPPGHH AQHSLMDGYC MFNHVAVAAR ENSTTRP00000004443/1-1141 ASGSVLRLVD AVLRAEIRNG MAIIRPPGHH AQHSLMDGYC MFNHVAVAAR bmy_16631T0/1-1119 ASGSVLRLVD AVLGAEIRNG MAIIRPPGHH AQHSLMDGYC MFNHVAVAAR BACU008482/1-1619 ASGSVLRLVD AVLGAEIRNG MAIIRPPGHH AQHSLMDGYC MFNHVAVAAR 501 550 ENSP00000334061/1-1215 YAQQKHRIRR VLIVDWDVHH GQGTQFTFDQ DPSVLYFSIH RYEQGRFWPH ENSBTAP00000017618/1-1128 YAQQKHDIQR VLIVDWDVHH GQGIQFAFDQ DPSVLYFSIH RYEQGRFWPH ENSTTRP00000004443/1-1141 YAQQKHDIQR VLIVDWDVHH GQGTQFTFDQ DPSVLYFSIH RYEQHRFWPH bmy_16631T0/1-1119 YAQQKHDIQR VLIVDWDVHH GQGTQFTFDQ DPSVLYFSIH RYEQGRFWPH BACU008482/1-1619 YAQQKHDIQR VLIVDWDVHH GQGTQFTFDQ DPSVLYFSIH RYEQGRFWPH 551 600 ENSP00000334061/1-1215 LKASNWSTTG FGQGQGYTIN VPWNQVGMRD ADYIAAFLHV LLPVALEFQP ENSBTAP00000017618/1-1128 LKASNWSTTG LGQGQGYTIN VPWNQVGMQD ADYIAAFLHV LLPVAFEFQP ENSTTRP00000004443/1-1141 LTASNWSTTG FGQGQGYTIN VPWNQVGMRD ADYIAAFLHV LLPVSLEFQP bmy_16631T0/1-1119 LTASNWSTTG FGQGQGYTIN VPWNQVGMRD ADYIAAFLHV LLPVSLEFQP BACU008482/1-1619 LTASNWSTTG FGQGQGYTIN VPWNQVGMRD ADYIAAFLHV LLPVSLEFQP 601 650 ENSP00000334061/1-1215 QLVLVAAGFD ALQGDPKGEM AATPAGFAQL THLLMGLAGG KLILSLEGGY ENSBTAP00000017618/1-1128 QLVLVAAGFD ALQGDPKGEM AATPAGFAQL THLLMGLAEG KLILSLEGGY ENSTTRP00000004443/1-1141 QLVLVAAGFD ALQGDPKGEM AATPAGFAQL THLLMGLAGG KLILSLEGGY bmy_16631T0/1-1119 QLVLVAAGFD ALQGDPKG-- ---------- ---------- --------GY BACU008482/1-1619 QLVLVAAGFD ALQGDPKGEM AATPAGFAQL THLLMGLAGG KLILSLEGGY 651 700 ENSP00000334061/1-1215 NLRALAEGVS ASLHTLLGDP CPMLESPGAP CRSAQASVSC ALEALEPFWE ENSBTAP00000017618/1-1128 NLHSLAEGVS ATLHTLLGDP CPVLESPGAP CPSAQASLSC TLEALEPFWE ENSTTRP00000004443/1-1141 NLRSLAEGVS ASLHTLLGDP CPVLEFPGAP CPSAQASISC ALEALEPFWE bmy_16631T0/1-1119 NLRSLAEGVS ASLHTLLGDP CPVLEFPGAP CPSAQASISC ALEALEPFWE BACU008482/1-1619 NLRSLAEGVS ASLHTLLGDP CPMLEFPGTP CPSAQVSISC VLEALEPFWK 701 750 ENSP00000334061/1-1215 VLVRSTETV- ERDNMEEDNV EESEEEGPWE PPVLPILTWP VLQSRTGLVY ENSBTAP00000017618/1-1128 SLVRSVESLE EKDTVEKDDV EEKEEERLPQ SPELSVPIWP VLQARTGLVY ENSTTRP00000004443/1-1141 VFVRSAETLE EEDTVEGDDV EEKEAEGPWQ PPELPILTWP VLQARTGLVY bmy_16631T0/1-1119 VFVRSAETLE EEDTVEGDNV EEKEEEGPWQ PPELPILTWP VLQARTGLVY BACU008482/1-1619 VFVRSAETLE EEDTVEGDNV EEKEEEGPWQ PPELPILTWP VLQARTGLVY 751 800 ENSP00000334061/1-1215 DQNMMNHCNL WDSHHPEVPQ RILRIMCRLE ELGLAGRCLT LTPRPATEAE ENSBTAP00000017618/1-1128 DQQMMDHHNL WDNYHPEMPQ RIHFIMHHLD ELGLAKRCHS LPARPATDAE ENSTTRP00000004443/1-1141 DPQMMDHYNL WDNHHPETPQ RIKRIMHHLE ELGLAGRCLA LPARPATDAE bmy_16631T0/1-1119 DQQMMDHYNL WDNHHPETPQ RIQRIMHHLE ELGLAGRCLA LPARPATDAE BACU008482/1-1619 DQQMMDHYNL WDNHHPETPQ RIQRIMHRLE ELGLAGRCLA LPARPATDAE 801 850 ENSP00000334061/1-1215 LLTCHSAEYV GHLRATEKMK TRELHRESSN FDSIYICPST FACAQLATGA ENSBTAP00000017618/1-1128 LL-CHSAEHL ERLRATEKMK TRELRREGAN YDSIYICSST FACAQLAAGA ENSTTRP00000004443/1-1141 LLTCHSAEHV DRLRATEKMK TRELHREGAS YDSIYICPST FTCAQLAAGA bmy_16631T0/1-1119 LLACHSAEHV DRLRATEKMK IRELHREGAN YDSIYICPST FTCAQLAAGA BACU008482/1-1619 LLACHSAEHV DRLRATEKMK IRELHREGAN YDSIYICPST FTCALLAAGA 851 900 ENSP00000334061/1-1215 ACRLVEAVLS GEVLNGAAVV RPPGHHAEQD AACGFCFFNS VAVAARHAQT ENSBTAP00000017618/1-1128 ACRLVEAVLA GEVLNGVAVV RPPGHHAEPD AACGFCFFNS VAVAARHAQA ENSTTRP00000004443/1-1141 ACRLVEAVLA GEVLNGIAVV RPPGHHAERD AACGFCFFNS VAVAARHAQA bmy_16631T0/1-1119 ACRLVEAVLA GEVLNGIAVV RPPGHHAERD AACGFCFFNS VAVAARHAQA BACU008482/1-1619 ACRLVEAVLA GGVLNGIAVV RPPGHHAERD AACGFCFFNS VAVAARHAQA 901 950 ENSP00000334061/1-1215 ISGHALRILI VDWDVHHGNG TQHMFEDDPS VLYVSLHRYD HGTFFPMGDE ENSBTAP00000017618/1-1128 ISGHALRILI VDWDIHHGNG TQHIFEEDPS VLYISLHRYD HGTFFPMGNE ENSTTRP00000004443/1-1141 VSGRALRILI VDWDVHHGNG TQHIFEEDPS VLYISLHRYD HGAFFPMGDE bmy_16631T0/1-1119 VSGRALRILI VDWDVHHGNG TQHIFEEDPS VLYISLHRYD HGTFFPMGDE BACU008482/1-1619 ISGRALRILI VDWDVHHGNG TQHIFEEDPS VLYISLHRYD HGTFFPMGDE 951 1000 ENSP00000334061/1-1215 GASSQIGRAA GTGFTVNVAW NGPRMGDADY LAAWHRLVLP IAYEFNPELV ENSBTAP00000017618/1-1128 GACTRIGKAT GTGFTVNVAW NGPRMGDADY LAAWHRLVLP VAYEFNPELV ENSTTRP00000004443/1-1141 GASSQIGQAA GTGYTVNVAW NGPRLGDADY LVAWHRLVLP IAYEFNPELV bmy_16631T0/1-1119 GASSQIGQAA GTGFTVNVAW NGPRLGDADY LVAWHRLVLP IAYEFNPELV BACU008482/1-1619 GASSQIGQAA GTGFTVNVAW NGPRLGDADY LVAWHRLVLP IAYEFNPELV 1001 1050 ENSP00000334061/1-1215 LVSAGFDAAR GDPLGGCQVS PEGYAHLTHL LMGLASGRII LILEGGYNLT ENSBTAP00000017618/1-1128 LVSAGFDAAR GDPLGGCQVS PEGYAHLTHQ LMGLANGHII LILEGGYNLT ENSTTRP00000004443/1-1141 LVSAGFDAAR GDPLGSCQVS PEGYAHLTHL LMGLANGRII LILEXXXXXX bmy_16631T0/1-1119 LVSAGFDAAR GDPLGSCQVS PEGYAHLTHL LMGLANGRII LILEGGYNLT BACU008482/1-1619 LVSAGFDAAR GDPLGSCQVS PDGYAHLTHL LMGLANGRII LILEGGYNLT 1051 1100 ENSP00000334061/1-1215 SISESMAACT RSLLGDPPPL LTLPRPPLSG ALASITETIQ VHRRYWRSLR ENSBTAP00000017618/1-1128 SISESMAACT RSLLGDPLPL LTRLRPPLSG AQASITKTIQ VHRRYWRSLR ENSTTRP00000004443/1-1141 XXXXXXXXXX XXXXXXXXXX XXXLRPPLSG ALASISETIQ VHRRYWC-LR bmy_16631T0/1-1119 SISESMAACT HSLLGDPPPL LTLLRPPLSG ALASITETIQ VHRRYWCSLR BACU008482/1-1619 SISESMAACT HSLLGDPPPL LTLLRPPLSG ALASITETIQ VHRRYWCSLR 1101 1150 ENSP00000334061/1-1215 VMKVEDREGP SSSKLVTKKA PQPAKPRLAE RMTTREKKVL EAGMGKVTSA ENSBTAP00000017618/1-1128 VMKRKNKEEL SSSKLITKKP SQPASPGLAN VTTTVEGNIL ETGMGQAASE ENSTTRP00000004443/1-1141 VTKVKDKEGP SSSKLITKKA PQAANPLSAK GMTMPEGNIL EAGTGKATSA bmy_16631T0/1-1119 VTKVKDKEGP SSSKLITKKA PQPANPGSTK GMTMPEGNIL EAGTGKATSA BACU008482/1-1619 VRKVKDKEGP SSSKLITKKA PQPANPGSTK GMTMPEGNIL EAGTGKATSA 1151 1200 ENSP00000334061/1-1215 SFGEESTPGQ TNSETAVVAL TQDQPSEAAT GGATLAQTIS EAAIGGAMLG ENSBTAP00000017618/1-1128 ASVKESTPDQ TESATAPVEL TQGQSSDTAT QGA------- ---------- ENSTTRP00000004443/1-1141 TSVKESTPGQ TTSETAVMEF TQD-VSETAM GGA------- ---------- bmy_16631T0/1-1119 TSVKESTPGQ TTSETAVMEF TQDQSSETAM GGA------- ---------- BACU008482/1-1619 TSVKESTPCQ TTSETAVMEL TQDQSSETAV GGT------- ---------- 1201 1250 ENSP00000334061/1-1215 QTTSEEAVGG ATPDQTTSEE TVGGAILDQT TSEDAVGGAT LGQTTSEEAV ENSBTAP00000017618/1-1128 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004443/1-1141 ---------- ---------- ---------- ---------- ---------- bmy_16631T0/1-1119 ---------- ---------- ---------- ---------- ---------- BACU008482/1-1619 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000334061/1-1215 GGATLAQTTS EAAMEGATLD QTTSEEAPGG TELIQTPLAS STDHQTPPTS ENSBTAP00000017618/1-1128 --A------- --------LD QTISEGATGG AELIQNPPAS CINNRIPPAL ENSTTRP00000004443/1-1141 --AALNQATS EAATGDATLD QTTSEEGVGG AELIQSPPAS CTDNQTPPAS bmy_16631T0/1-1119 --AGLNQATS EAATGDATLD QTTSEEAVGG AELIQSPPAS CADSQTPPAS BACU008482/1-1619 --AGLNQATS EAATGDATLD QTTSEEAVGG AELIQSPPAS CADSQTPPAS 1301 1350 ENSP00000334061/1-1215 PVQGTTPQIS PSTLIGSLRT LELGSESQGA SESQAPGEEN LLGEAAGGQD ENSBTAP00000017618/1-1128 PVQGATAQTS PSKLMANLRI LDLDSTTQ-- ---EPSEEEG LLGEAAGGQD ENSTTRP00000004443/1-1141 PMQGATTQIS PSKLTGNLRT LELDK-AQ-- ---EPPEEEE LLGEAAGGQD bmy_16631T0/1-1119 PMQGATTQIS PSKLTGNLRT LELDK-AQ-- ---EPPEEEE LLGEAAGGQD BACU008482/1-1619 PMQGATTQIS PSKLTGNLRT LELDK-AQ-- ---EPPEEEE LLGEAAGGQD 1351 1400 ENSP00000334061/1-1215 MADSMLMQ-- GSRGLTDQAI FYAVTPLPWC PHLVAVCPIP AAGLDVTQPC ENSBTAP00000017618/1-1128 TNESVPVQVF GDHADTDEVM FYAVRPLLWC PHLAAVCPIP ETGLNVTQPC ENSTTRP00000004443/1-1141 MNESVLMHVT GDHADTDQAM FYAVTPLPWC PHLVAVCPVP EAGLDVTQPC bmy_16631T0/1-1119 MNESVLMQVT GDHADTDQAM FYAVTPLPWC PHLVAVCPVP EAGLDVTQPC BACU008482/1-1619 MNESVLMQVT GDHADTE--- ---------- ---------- ---------- 1401 1450 ENSP00000334061/1-1215 GDCGTIQENW VCLSCYQVYC GRYINGHMLQ HHGNSGHPLV LSYIDLSAWC ENSBTAP00000017618/1-1128 QDCGTLQENW VCLSCYQVYC GRYINAHMLQ HHEGSGHPLV LSYADLSAWC ENSTTRP00000004443/1-1141 QDCGALQENW VCLSCYQVYC SRYINAHMLQ HHEGSGHPLV LSYADLSTWC bmy_16631T0/1-1119 QDCGALQENW VCLSCYQVCC SRYINAHMLQ HHEGSGHPLV LSYADLSTWC BACU008482/1-1619 ---------- ------QVYC SRYINAHMLQ HHEGLGHPLV LSYADLSTWC 1451 1500 ENSP00000334061/1-1215 YYCQAYVHHQ ALLDVKNI-- ---------- ------AHQN KFGEDMPHPH ENSBTAP00000017618/1-1128 YHCQAYVHHK DLLAVKNI-- ---------- ------AHQN KFGEDIPHSD ENSTTRP00000004443/1-1141 YHCQAYVHHK ALLAVKNI-- ---------- ------AHQN KFGENMLHSH bmy_16631T0/1-1119 YHCQAYVHHE ALLAVKNI-- ---------- ------AHQN KFGENMPHSH BACU008482/1-1619 YHCQAYVHHE DRTQLSPMLP KSPLEAAQAP GPQALTKHLA KSGHSGPAVH 1501 1550 ENSP00000334061/1-1215 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017618/1-1128 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004443/1-1141 ---------- ---------- ---------- ---------- ---------- bmy_16631T0/1-1119 ---------- ---------- ---------- ---------- ---------- BACU008482/1-1619 ISSLSCPLGA MALPTKPSMI DLGLGTWSPS SQEQSHRARA PSRGVGKQLP 1551 1600 ENSP00000334061/1-1215 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017618/1-1128 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004443/1-1141 ---------- ---------- ---------- ---------- ---------- bmy_16631T0/1-1119 ---------- ---------- ---------- ---------- ---------- BACU008482/1-1619 EYKAVVVGAS GVGKSALTIQ LNHQRFVEDH DPTIQDSYWK EMALDHGGCI 1601 1650 ENSP00000334061/1-1215 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017618/1-1128 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004443/1-1141 ---------- ---------- ---------- ---------- ---------- bmy_16631T0/1-1119 ---------- ---------- ---------- ---------- ---------- BACU008482/1-1619 LNVLDTAGQA THRALRDQCV AIGDGVLGVF ALDDPSSLAQ LQQMRATWGP 1651 1700 ENSP00000334061/1-1215 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017618/1-1128 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004443/1-1141 ---------- ---------- ---------- ---------- ---------- bmy_16631T0/1-1119 ---------- ---------- ---------- ---------- ---------- BACU008482/1-1619 HHTQPLVLVG NKCDLVTTTG DARAAAAALA KSWGAPFVET SAKTRQGVEE 1701 1750 ENSP00000334061/1-1215 ---------- ---------- ---------- ---------- --- ENSBTAP00000017618/1-1128 ---------- ---------- ---------- ---------- --- ENSTTRP00000004443/1-1141 ---------- ---------- ---------- ---------- --- bmy_16631T0/1-1119 ---------- ---------- ---------- ---------- --- BACU008482/1-1619 AFSLLIHEIQ RVREAMAKEA MAGPGGDKGR HQKAMCRCGC SVA