KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:16 2014 Check: 00 .. Name: BACU018521/1-642 Len: 733 Check: 8672 Weight: 1.00 Name: ENSTTRP00000001619/1-664 Len: 733 Check: 7315 Weight: 1.00 Name: ENSP00000301284/1-676 Len: 733 Check: 4988 Weight: 1.00 Name: bmy_15824T0/1-674 Len: 733 Check: 6494 Weight: 1.00 Name: ENSBTAP00000017626/1-551 Len: 733 Check: 3 Weight: 1.00 // 1 50 BACU018521/1-642 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001619/1-664 ---------- ---------- ---------- -------MPH AFKPGDLVFA ENSP00000301284/1-676 ---------- ---------- ---------- -------MPH AFKPGDLVFA bmy_15824T0/1-674 RPAPAPGFAS PCRRCRRRRC CCPCRCRFPR PGPPAASMPH AFKPGDLVFA ENSBTAP00000017626/1-551 ---------- ---------- ---------- ---------- ---------- 51 100 BACU018521/1-642 ---------- QIDDIADGAV KPPPNKYPIF FFGTHETAFL GPKDLFPYDK ENSTTRP00000001619/1-664 KMKGYPHWPA RIDDIADGAV KPPPNKYPIF FFGTHETAFL GPKDLFPYDK ENSP00000301284/1-676 KMKGYPHWPA RIDDIADGAV KPPPNKYPIF FFGTHETAFL GPKDLFPYDK bmy_15824T0/1-674 KMKGYPHWPA RIDDIADGAV KPPPNKYPIF FFGTHETAFL GPKDLFPYDK ENSBTAP00000017626/1-551 ---------- ---------- ---------- ---------- ---------- 101 150 BACU018521/1-642 CKDKYGKPNK RKGFNEGLWE IQNNPHASYS APLPVSSSDS EAPEADPAGG ENSTTRP00000001619/1-664 CKDKYGKPNK RKGFNEGLWE IQNNPHASYS APLPVSSSDS EAPEADPAVG ENSP00000301284/1-676 CKDKYGKPNK RKGFNEGLWE IQNNPHASYS APPPVSSSDS EAPEANPADG bmy_15824T0/1-674 CKDKYGKPNK RKGFNEGLWE IQNNPHASYS APLPVSSSDS EAPEADPAGG ENSBTAP00000017626/1-551 ---------- ---------- ---------- ---------- ---------- 151 200 BACU018521/1-642 S---EDDEDR GVMAVTAVTA AAASDRMESD SDSDKSSDNS GLKRKAVALK ENSTTRP00000001619/1-664 S---EDDEDR GVMAVTAVTA AAASDRMESD SDSDKSSDNS GLKRKTVALK ENSP00000301284/1-676 SDADEDDEDR GVMAVTAVTA TAASDRMESD SDSDKSSDNS GLKRKTPALK bmy_15824T0/1-674 S---EDDEDR GVMAVTAVTA AAASDRMESD SDSDKSSDNS GLKRKAVALK ENSBTAP00000017626/1-551 ---------- --MAVTAVTA AATGDRMESD SDSDKSSDNS GLKRKAVALK 201 250 BACU018521/1-642 MSVSKRARKA SSDLDQASMS PSEEENSESS SESEKTSDQD FTPEKKAVVR ENSTTRP00000001619/1-664 MSVSKRARKA SSDLDQASMS PSEEENSESS SESEKTSDQD FTPEKKAVVR ENSP00000301284/1-676 MSVSKRARKA SSDLDQASVS PSEEENSESS SESEKTSDQD FTPEKKAAVR bmy_15824T0/1-674 MSVSKRARKA SSDLDQASMS PSEEENSESS SESEKTSDQD FTPEKKAVVR ENSBTAP00000017626/1-551 MSVSKRTRKA SSDLDQASMS PSEEENSESS SESEKTSDQD FTPEKKAVVR 251 300 BACU018521/1-642 APRRGPLPGR KKKVRVFYFV PTHWPVEAPQ ASPTVTSHGL RSGSVRFGGG ENSTTRP00000001619/1-664 APRRGPLPGR KKK------- ---XXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000301284/1-676 APRRGPLGGR KKK------- ---KAPSASD SDSKADSDGA KPEPVAMARS bmy_15824T0/1-674 APRRGPLPGR KKK------- ---KAPSASD SDSKAESDGA KAEPVAVARS ENSBTAP00000017626/1-551 APRRGPLPGR KKK------- ---KAPSASD SDSKAESDAA KAEPVPPVRS 301 350 BACU018521/1-642 EAVGP-RETP GPADIRFHLH SWLWPMVSED AWGPLALAAL PSPGLPQKAP ENSTTRP00000001619/1-664 XXXX--XXXX XXXXXXXXXX X--XXXXXXX XXXXXXXXXX XXXX-XXXXX ENSP00000301284/1-676 ASSS--SSSS SSSDSDVSVK K--PPRGRKP AEKPLPKPRG RKPK-PERPP bmy_15824T0/1-674 ASSS--SSCS SSSDSDVSVK K--PPRGRKP AEKPPPKPRG RKPK-PERPP ENSBTAP00000017626/1-551 PSSSSASSSS SSSDSEVSVK K--PPRGRKP AEKPPPKPRG RKPK-PERPP 351 400 BACU018521/1-642 SASDSDSKAE S--------- -DGAKAEPVA VARSASSSSS CSSSSDSDVS ENSTTRP00000001619/1-664 XXXXXXXDSD EVDRISEWKR RDEERRRELE ARRRREQEEE LRRLREREKE ENSP00000301284/1-676 SSSSSDSDSD EVDRISEWKR RDEARRRELE ARRRREQEEE LRRLREQEKE bmy_15824T0/1-674 TTSSSDSDSD EVDRISEWKR RDEERRRELE ARRRREQEEE LRRLRERDKE ENSBTAP00000017626/1-551 TSSSSDSDSD EVDRISEWKR RDEERRRELE ARRRREQEEE LRRLREQEKE 401 450 BACU018521/1-642 VKKPPRGR-K PGRQAVGGCC PGPGPGL--- AWRVKKRGRK GRGRGPQSSS ENSTTRP00000001619/1-664 EKERRRGR-E RGEAARAGSA GSSGDELKDD DEPVKKRGRK GRSRGPQSSS ENSP00000301284/1-676 EKERRRERAD RGEA-ERGSG GSSGDELRED DEPVKKRGRK GRGRGPPSSS bmy_15824T0/1-674 EKERRRGR-E RGEAAPAGSA GSSGDELKDD DEPV------ ---------- ENSBTAP00000017626/1-551 EKERRRER-E RGEAVPGGSA GSSGDELKDD DEPVKKRGRK GRGRGPQSSS 451 500 BACU018521/1-642 DSEPEAELDR EVKKSAKKLH LQSTEPARRP SQKEKRGRPE EKPRARSAKV ENSTTRP00000001619/1-664 DSEPEAELDR EVKKSAKKLH LQSTEPARRP SQKEKRGRPE EKPRARPAKM ENSP00000301284/1-676 DSEPEAELER EAKKSAKKPQ SSSTEPARKP GQKEKRVRPE EKQQAKPVKV bmy_15824T0/1-674 ---------- --KKSAKKLH LQSTEPARRP SQKEKRGRPE EKPRARPVKV ENSBTAP00000017626/1-551 DSEPEAELDR EVKKSAKKLQ PQSTEPARRS SQKEKRGRSE EKPRARPVKV 501 550 BACU018521/1-642 ERTRKRSEGF PPDRKVEKKK EPSVEEKLQK LHSEIKFALK VDNPDVKRCL ENSTTRP00000001619/1-664 ERTRKRSEGF PPDRKVEKKK EPSVEEKLQK LHSEIKFALK VDNPDVKRCL ENSP00000301284/1-676 ERTRKRSEGF SMDRKVEKKK EPSVEEKLQK LHSEIKFALK VDSPDVKRCL bmy_15824T0/1-674 ERTRKRSEGF PPDRKVEKKK EPSVEEKLQK LHSEIKFALK VDNPDVKRCL ENSBTAP00000017626/1-551 ERTRKRSEGF PPDRKVEKKK EPSVEEKLQK LHSEIKFALK VDNPDVKRCL 551 600 BACU018521/1-642 NALEELGTLQ VTSQILQKNT DVVATLKKIR RYKANKEVME KAAEVYARLK ENSTTRP00000001619/1-664 NALEELGTLQ VTSQILQKNT DVVATLKKIR RYKANKEVME KAAEVYARLK ENSP00000301284/1-676 NALEELGTLQ VTSQILQKNT DVVATLKKIR RYKANKDVME KAAEVYTRLK bmy_15824T0/1-674 NALEELGTLQ VTSQILQKNT DVVATLKKIR RYKANKEVME KAAEVYARLK ENSBTAP00000017626/1-551 NALEELGTLQ VTSQILQKNT DVVATLKKIR RYKANKEVME KAAEVYTRLK 601 650 BACU018521/1-642 SRVLGPKIEA IQKATRTGP- ---------- -EKAEEILAG EEAPAERAED ENSTTRP00000001619/1-664 SRVLGPKIEA IQKATRTGP- ---------- -EKAEEILAG EEAPAERAED ENSP00000301284/1-676 SRVLGPKIEA VQKVNKAGME KEKAEEKLAG EELAGEELAG EEAPQEKAED bmy_15824T0/1-674 SRVLGPKIEA IQKATRTGP- ---------- -EKAEEILAG EEAPAERAED ENSBTAP00000017626/1-551 SRVLGPKVEA IQKATKTGSE KERAE----- AEKAEEVLAG EEAPTERVED 651 700 BACU018521/1-642 ETSADLAAPV NGEAMSQKGE SMEDKEPDEG QNSEEGPGGG SSEDPLHND- ENSTTRP00000001619/1-664 EASTDLSAPV NGEATSQKGE SMEDKEPEEG QNSEEGPGGG SSEEPSHND- ENSP00000301284/1-676 KPSTDLSAPV NGEATSQKGE SAEDKEHEEG RDSEEGPRCG SSEDL--HD- bmy_15824T0/1-674 EASADLSAPV NGEATSQKGE SMEDKEPDEG QNSEEGPGGG SSEDLLHNDS ENSBTAP00000017626/1-551 EASTDLSAPV NGEAASQKGE STEDKEPEQV QNSEEGLGGG SSEDLLHND- 701 750 BACU018521/1-642 SAREGPDLDG PGKERQERER LRVDSESLDD EDS ENSTTRP00000001619/1-664 SAREGPDLDG PGKERQERER LRVDSESLDD EDS ENSP00000301284/1-676 SVREGPDLDR PGSDRQERER ARGDSEALDE ES- bmy_15824T0/1-674 SAREGPDLDG PGKERQERER LRVDSESLDD EDS ENSBTAP00000017626/1-551 TVREGPNLDG PGKEWLDRER LRMDSESLDE EES